RNA–Protein interactions for RNA: ENST00000641009.1

LINC00339-211, long intergenic non-protein coding RNA 339, humanhuman

Gene LINC00339, Length 1,450 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-211ENST00000641009 RNF20Q5VTR2 975 aa16.03■□□□□ 0.16
LINC00339-211ENST00000641009 METTL7BQ6UX53 244 aa16.03■□□□□ 0.16
LINC00339-211ENST00000641009 TMTC3Q6ZXV5 915 aa16.03■□□□□ 0.16
LINC00339-211ENST00000641009 TCEANC2Q96MN5 208 aa16.03■□□□□ 0.16
LINC00339-211ENST00000641009 TUT1Q9H6E5 874 aaKnown RBP16.03■□□□□ 0.16
LINC00339-211ENST00000641009 PRDM6Q9NQX0 595 aa16.03■□□□□ 0.16
LINC00339-211ENST00000641009 SIP14410 1827 aa16.02■□□□□ 0.16
LINC00339-211ENST00000641009 BAIAP3O94812 1187 aa16.02■□□□□ 0.15
LINC00339-211ENST00000641009 NEDD9Q14511 834 aa16.02■□□□□ 0.15
LINC00339-211ENST00000641009 CCDC85BQ15834 202 aaPredicted RBP16.02■□□□□ 0.15
LINC00339-211ENST00000641009 UBE2SQ16763 222 aa16.02■□□□□ 0.15
LINC00339-211ENST00000641009 TCTN1Q2MV58 587 aa16.02■□□□□ 0.15
LINC00339-211ENST00000641009 ZNF618Q5T7W0 954 aa16.02■□□□□ 0.15
LINC00339-211ENST00000641009 TRAF7Q6Q0C0 670 aa16.02■□□□□ 0.15
LINC00339-211ENST00000641009 SGMS1Q86VZ5 419 aa16.02■□□□□ 0.15
LINC00339-211ENST00000641009 HERC6Q8IVU3 1022 aa16.02■□□□□ 0.15
LINC00339-211ENST00000641009 PHOSPHO2Q8TCD6 241 aa16.02■□□□□ 0.15
LINC00339-211ENST00000641009 NEK1Q96PY6 1258 aa16.02■□□□□ 0.15
LINC00339-211ENST00000641009 PSTPIP2Q9H939 334 aa16.02■□□□□ 0.15
LINC00339-211ENST00000641009 LOXHD1Q8IVV2 1947 aa16.01■□□□□ 0.15
LINC00339-211ENST00000641009 ARHGEF15O94989 841 aa16.01■□□□□ 0.15
LINC00339-211ENST00000641009 CXCL10P02778 98 aa16.01■□□□□ 0.15
LINC00339-211ENST00000641009 WDR5P61964 334 aaKnown RBP16.01■□□□□ 0.15
LINC00339-211ENST00000641009 SP4Q02446 784 aa16.01■□□□□ 0.15
LINC00339-211ENST00000641009 MBTPS1Q14703 1052 aa16.01■□□□□ 0.15
LINC00339-211ENST00000641009 ADCK5Q3MIX3 580 aa16.01■□□□□ 0.15
LINC00339-211ENST00000641009 CNKSR3Q6P9H4 555 aa16.01■□□□□ 0.15
LINC00339-211ENST00000641009 APOA5Q6Q788 366 aa16.01■□□□□ 0.15
LINC00339-211ENST00000641009 TMCO2Q7Z6W1 182 aaPredicted RBP16.01■□□□□ 0.15
LINC00339-211ENST00000641009 SERINC5Q86VE9 423 aa16.01■□□□□ 0.15
LINC00339-211ENST00000641009 TRIM50Q86XT4 487 aa16.01■□□□□ 0.15
LINC00339-211ENST00000641009 RASEFQ8IZ41 740 aa16.01■□□□□ 0.15
LINC00339-211ENST00000641009 GPR20Q99678 358 aa16.01■□□□□ 0.15
LINC00339-211ENST00000641009 CERS4Q9HA82 394 aa16.01■□□□□ 0.15
LINC00339-211ENST00000641009 C17orf102A2RUQ5 167 aa16■□□□□ 0.15
LINC00339-211ENST00000641009 CDC45O75419 566 aa16■□□□□ 0.15
LINC00339-211ENST00000641009 PARNO95453 639 aaKnown RBP16■□□□□ 0.15
LINC00339-211ENST00000641009 SMIM10L2AP0DMW4 78 aa16■□□□□ 0.15
LINC00339-211ENST00000641009 SMIM10L2BP0DMW5 78 aa16■□□□□ 0.15
LINC00339-211ENST00000641009 KCNJ6P48051 423 aa16■□□□□ 0.15
LINC00339-211ENST00000641009 DEFB103AP81534 67 aa16■□□□□ 0.15
LINC00339-211ENST00000641009 XRRA1Q6P2D8 792 aa16■□□□□ 0.15
LINC00339-211ENST00000641009 SYNE3Q6ZMZ3 975 aa16■□□□□ 0.15
LINC00339-211ENST00000641009 HEATR3Q7Z4Q2 680 aa16■□□□□ 0.15
LINC00339-211ENST00000641009 ATP6V0A1Q93050 837 aa16■□□□□ 0.15
LINC00339-211ENST00000641009 USP26Q9BXU7 913 aa16■□□□□ 0.15
LINC00339-211ENST00000641009 BRPF3Q9ULD4 1205 aa16■□□□□ 0.15
LINC00339-211ENST00000641009 CNTNAP5Q8WYK1 1306 aa16■□□□□ 0.15
LINC00339-211ENST00000641009 TCF20Q9UGU0 1960 aaKnown RBP15.99■□□□□ 0.15
LINC00339-211ENST00000641009 RFXAPO00287 272 aa15.99■□□□□ 0.15
LINC00339-211ENST00000641009 TREHO43280 583 aa15.99■□□□□ 0.15
LINC00339-211ENST00000641009 HOXC8P31273 242 aa15.99■□□□□ 0.15
LINC00339-211ENST00000641009 THPOP40225 353 aa15.99■□□□□ 0.15
LINC00339-211ENST00000641009 EXOSC10Q01780 885 aaKnown RBP15.99■□□□□ 0.15
LINC00339-211ENST00000641009 UTP14CQ5TAP6 766 aaKnown RBP15.99■□□□□ 0.15
LINC00339-211ENST00000641009 DHX32Q7L7V1 743 aaKnown RBP15.99■□□□□ 0.15
LINC00339-211ENST00000641009 NLRX1Q86UT6 975 aa15.99■□□□□ 0.15
LINC00339-211ENST00000641009 SENP7Q9BQF6 1050 aa15.99■□□□□ 0.15
LINC00339-211ENST00000641009 RNPEPQ9H4A4 650 aa15.99■□□□□ 0.15
LINC00339-211ENST00000641009 NCOR1O75376 2440 aa15.98■□□□□ 0.15
LINC00339-211ENST00000641009 EPOPA6NHQ4 379 aa15.98■□□□□ 0.15
LINC00339-211ENST00000641009 KIF28PB7ZC32 967 aa15.98■□□□□ 0.15
LINC00339-211ENST00000641009 TLL1O43897 1013 aa15.98■□□□□ 0.15
LINC00339-211ENST00000641009 ATP9AO75110 1047 aa15.98■□□□□ 0.15
LINC00339-211ENST00000641009 ITGB5P18084 799 aa15.98■□□□□ 0.15
LINC00339-211ENST00000641009 TAP1Q03518 808 aa15.98■□□□□ 0.15
LINC00339-211ENST00000641009 TSGA10IPQ3SY00 556 aa15.98■□□□□ 0.15
LINC00339-211ENST00000641009 WWC2Q6AWC2 1192 aa15.98■□□□□ 0.15
LINC00339-211ENST00000641009 MICALL1Q8N3F8 863 aa15.98■□□□□ 0.15
LINC00339-211ENST00000641009 PCDHA6Q9UN73 950 aa15.98■□□□□ 0.15
LINC00339-211ENST00000641009 PCDHA8Q9Y5H6 950 aa15.98■□□□□ 0.15
LINC00339-211ENST00000641009 NLRC5Q86WI3 1866 aa15.98■□□□□ 0.15
LINC00339-211ENST00000641009 LCHNA4D1U4 455 aa15.97■□□□□ 0.15
LINC00339-211ENST00000641009 SPDYE3A6NKU9 549 aa15.97■□□□□ 0.15
LINC00339-211ENST00000641009 ZBTB43O43298 467 aa15.97■□□□□ 0.15
LINC00339-211ENST00000641009 KCNA2P16389 499 aa15.97■□□□□ 0.15
LINC00339-211ENST00000641009 RTN1Q16799 776 aa15.97■□□□□ 0.15
LINC00339-211ENST00000641009 SPRED2Q7Z698 418 aa15.97■□□□□ 0.15
LINC00339-211ENST00000641009 ARNTL2Q8WYA1 636 aa15.97■□□□□ 0.15
LINC00339-211ENST00000641009 GPRASP2Q96D09 838 aa15.97■□□□□ 0.15
LINC00339-211ENST00000641009 SETD4Q9NVD3 440 aa15.97■□□□□ 0.15
LINC00339-211ENST00000641009 RBM28Q9NW13 759 aaKnown RBP15.97■□□□□ 0.15
LINC00339-211ENST00000641009 WDR81Q562E7 1941 aa15.97■□□□□ 0.15
LINC00339-211ENST00000641009 ABHD14A-ACY1A0A1B0GW23 586 aa15.97■□□□□ 0.15
LINC00339-211ENST00000641009 RSPH10B2B2RC85 870 aa15.97■□□□□ 0.15
LINC00339-211ENST00000641009 LGR5O75473 907 aa15.97■□□□□ 0.15
LINC00339-211ENST00000641009 RSPH10BP0C881 870 aa15.97■□□□□ 0.15
LINC00339-211ENST00000641009 CPA1P15085 419 aa15.97■□□□□ 0.15
LINC00339-211ENST00000641009 TCF7P36402 384 aaPredicted RBP15.97■□□□□ 0.15
LINC00339-211ENST00000641009 MTMR1Q13613 665 aa15.97■□□□□ 0.15
LINC00339-211ENST00000641009 IKBKEQ14164 716 aa15.97■□□□□ 0.15
LINC00339-211ENST00000641009 TYW1BQ6NUM6 668 aa15.97■□□□□ 0.15
LINC00339-211ENST00000641009 GIMAP8Q8ND71 665 aaPredicted RBP15.97■□□□□ 0.15
LINC00339-211ENST00000641009 ZBED2Q9BTP6 218 aa15.97■□□□□ 0.15
LINC00339-211ENST00000641009 PKD2L1Q9P0L9 805 aa15.97■□□□□ 0.15
LINC00339-211ENST00000641009 ZNF215Q9UL58 517 aaPredicted RBP15.97■□□□□ 0.15
LINC00339-211ENST00000641009 UBIAD1Q9Y5Z9 338 aa15.97■□□□□ 0.15
LINC00339-211ENST00000641009 BDP1A6H8Y1 2624 aa15.96■□□□□ 0.15
LINC00339-211ENST00000641009 KLF18A0A0U1RQI7 1052 aa15.96■□□□□ 0.14
LINC00339-211ENST00000641009 CTSHP09668 335 aa15.96■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms