RNA–Protein interactions for RNA: ENST00000637551.2

CLN3-259, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,083 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-259ENST00000637551 ITGA7Q13683 1181 aa20.81■□□□□ 0.92
CLN3-259ENST00000637551 JAKMIP3Q5VZ66 844 aa20.81■□□□□ 0.92
CLN3-259ENST00000637551 COPS5Q92905 334 aa20.81■□□□□ 0.92
CLN3-259ENST00000637551 FERMT2Q96AC1 680 aa20.81■□□□□ 0.92
CLN3-259ENST00000637551 SPATA33Q96N06 139 aa20.81■□□□□ 0.92
CLN3-259ENST00000637551 MTMR10Q9NXD2 777 aa20.81■□□□□ 0.92
CLN3-259ENST00000637551 CYP3A7-CYP3A51PA0A087WV96 503 aa20.8■□□□□ 0.92
CLN3-259ENST00000637551 TLR3O15455 904 aaKnown RBP20.8■□□□□ 0.92
CLN3-259ENST00000637551 CYP3A7P24462 503 aa20.8■□□□□ 0.92
CLN3-259ENST00000637551 TRIM29Q14134 588 aa20.8■□□□□ 0.92
CLN3-259ENST00000637551 LRIT3Q3SXY7 679 aa20.8■□□□□ 0.92
CLN3-259ENST00000637551 TMEM260Q9NX78 707 aa20.8■□□□□ 0.92
CLN3-259ENST00000637551 RTEL1Q9NZ71 1219 aa20.8■□□□□ 0.92
CLN3-259ENST00000637551 PRKAG2Q9UGJ0 569 aa20.8■□□□□ 0.92
CLN3-259ENST00000637551 LTBP2Q14767 1821 aa20.8■□□□□ 0.92
CLN3-259ENST00000637551 IGLV3-22A0A075B6J6 115 aa20.79■□□□□ 0.92
CLN3-259ENST00000637551 NOP56O00567 594 aaKnown RBP20.79■□□□□ 0.92
CLN3-259ENST00000637551 CLTBP09497 229 aa20.79■□□□□ 0.92
CLN3-259ENST00000637551 SUPT20HL2P0C7V6 817 aa20.79■□□□□ 0.92
CLN3-259ENST00000637551 GCFC2P16383 781 aaKnown RBP20.79■□□□□ 0.92
CLN3-259ENST00000637551 ATN1P54259 1190 aaPredicted RBP20.79■□□□□ 0.92
CLN3-259ENST00000637551 NONOQ15233 471 aaKnown RBP eCLIP20.79■□□□□ 0.92
CLN3-259ENST00000637551 TRIM60Q495X7 471 aa20.79■□□□□ 0.92
CLN3-259ENST00000637551 FAM126BQ8IXS8 530 aa20.79■□□□□ 0.92
CLN3-259ENST00000637551 C7orf61Q8IZ16 206 aa20.79■□□□□ 0.92
CLN3-259ENST00000637551 DOCK5Q9H7D0 1870 aa20.79■□□□□ 0.92
CLN3-259ENST00000637551 HAS3O00219 553 aa20.78■□□□□ 0.92
CLN3-259ENST00000637551 KIAA0355O15063 1070 aa20.78■□□□□ 0.92
CLN3-259ENST00000637551 MMP1P03956 469 aa20.78■□□□□ 0.92
CLN3-259ENST00000637551 ZNF76P36508 570 aa20.78■□□□□ 0.92
CLN3-259ENST00000637551 TLE2Q04725 743 aa20.78■□□□□ 0.92
CLN3-259ENST00000637551 HSDL1Q3SXM5 330 aa20.78■□□□□ 0.92
CLN3-259ENST00000637551 CCDC83Q8IWF9 413 aa20.78■□□□□ 0.92
CLN3-259ENST00000637551 VTI1AQ96AJ9 217 aa20.78■□□□□ 0.92
CLN3-259ENST00000637551 MBOAT7Q96N66 472 aa20.78■□□□□ 0.92
CLN3-259ENST00000637551 AIFM3Q96NN9 605 aa20.78■□□□□ 0.92
CLN3-259ENST00000637551 SDF4Q9BRK5 362 aa20.78■□□□□ 0.92
CLN3-259ENST00000637551 PDLIM7Q9NR12 457 aa20.78■□□□□ 0.92
CLN3-259ENST00000637551 TBC1D22BQ9NU19 505 aa20.78■□□□□ 0.92
CLN3-259ENST00000637551 ATP11BQ9Y2G3 1177 aa20.78■□□□□ 0.92
CLN3-259ENST00000637551 VCANP13611 3396 aa20.78■□□□□ 0.92
CLN3-259ENST00000637551 FAM86B1E9PN63 330 aa20.77■□□□□ 0.92
CLN3-259ENST00000637551 PPFIA3O75145 1194 aa20.77■□□□□ 0.92
CLN3-259ENST00000637551 CD4P01730 458 aa20.77■□□□□ 0.92
CLN3-259ENST00000637551 MYL3P08590 195 aa20.77■□□□□ 0.92
CLN3-259ENST00000637551 FAM86B2P0C5J1 330 aa20.77■□□□□ 0.92
CLN3-259ENST00000637551 KRT2P35908 639 aa20.77■□□□□ 0.92
CLN3-259ENST00000637551 IRX5P78411 483 aaPredicted RBP20.77■□□□□ 0.92
CLN3-259ENST00000637551 CYFIP1Q7L576 1253 aa20.77■□□□□ 0.92
CLN3-259ENST00000637551 TMX3Q96JJ7 454 aa20.77■□□□□ 0.92
CLN3-259ENST00000637551 GPR20Q99678 358 aa20.77■□□□□ 0.92
CLN3-259ENST00000637551 AGO4Q9HCK5 861 aaKnown RBP20.77■□□□□ 0.92
CLN3-259ENST00000637551 JPH1Q9HDC5 661 aaPredicted RBP20.77■□□□□ 0.92
CLN3-259ENST00000637551 ZNF215Q9UL58 517 aaPredicted RBP20.77■□□□□ 0.92
CLN3-259ENST00000637551 GRIN2DO15399 1336 aa20.77■□□□□ 0.91
CLN3-259ENST00000637551 EMSYQ7Z589 1322 aa20.77■□□□□ 0.91
CLN3-259ENST00000637551 CCDC194A0A1B0GVG4 234 aa20.76■□□□□ 0.91
CLN3-259ENST00000637551 Q4G0T1 1027 aa20.76■□□□□ 0.91
CLN3-259ENST00000637551 PPP4R3AQ6IN85 833 aa20.76■□□□□ 0.91
CLN3-259ENST00000637551 PLA2G4DQ86XP0 818 aa20.76■□□□□ 0.91
CLN3-259ENST00000637551 TBCKQ8TEA7 893 aa20.76■□□□□ 0.91
CLN3-259ENST00000637551 SEPT1Q8WYJ6 367 aa20.76■□□□□ 0.91
CLN3-259ENST00000637551 KAT2BQ92831 832 aa20.76■□□□□ 0.91
CLN3-259ENST00000637551 PGBD1Q96JS3 809 aa20.76■□□□□ 0.91
CLN3-259ENST00000637551 SLC9A2Q9UBY0 812 aa20.76■□□□□ 0.91
CLN3-259ENST00000637551 TBX21Q9UL17 535 aa20.76■□□□□ 0.91
CLN3-259ENST00000637551 IPO5O00410 1097 aaKnown RBP20.75■□□□□ 0.91
CLN3-259ENST00000637551 JAK2O60674 1132 aa20.75■□□□□ 0.91
CLN3-259ENST00000637551 PTGS1P23219 599 aa20.75■□□□□ 0.91
CLN3-259ENST00000637551 SLC26A2P50443 739 aa20.75■□□□□ 0.91
CLN3-259ENST00000637551 FAAP100Q0VG06 881 aa20.75■□□□□ 0.91
CLN3-259ENST00000637551 SAFBQ15424 915 aaKnown RBP eCLIP20.75■□□□□ 0.91
CLN3-259ENST00000637551 RASGRP4Q8TDF6 673 aa20.75■□□□□ 0.91
CLN3-259ENST00000637551 TNPO1Q92973 898 aaKnown RBP20.75■□□□□ 0.91
CLN3-259ENST00000637551 TNFRSF25Q93038 417 aa20.75■□□□□ 0.91
CLN3-259ENST00000637551 LENG9Q96B70 501 aa20.75■□□□□ 0.91
CLN3-259ENST00000637551 RIT2Q99578 217 aa20.75■□□□□ 0.91
CLN3-259ENST00000637551 C16orf70Q9BSU1 422 aa20.75■□□□□ 0.91
CLN3-259ENST00000637551 ZSCAN21Q9Y5A6 473 aaPredicted RBP20.75■□□□□ 0.91
CLN3-259ENST00000637551 PQBP1O60828 265 aaKnown RBP20.74■□□□□ 0.91
CLN3-259ENST00000637551 ATP9AO75110 1047 aa20.74■□□□□ 0.91
CLN3-259ENST00000637551 LGALS2P05162 132 aa20.74■□□□□ 0.91
CLN3-259ENST00000637551 HOXC8P31273 242 aa20.74■□□□□ 0.91
CLN3-259ENST00000637551 ORC2Q13416 577 aaPredicted RBP20.74■□□□□ 0.91
CLN3-259ENST00000637551 NBPF20Q3BBV1 942 aa20.74■□□□□ 0.91
CLN3-259ENST00000637551 KRT40Q6A162 431 aa20.74■□□□□ 0.91
CLN3-259ENST00000637551 NEK8Q86SG6 692 aa20.74■□□□□ 0.91
CLN3-259ENST00000637551 PHF6Q8IWS0 365 aaKnown RBP eCLIP20.74■□□□□ 0.91
CLN3-259ENST00000637551 SMAP1Q8IYB5 467 aaPredicted RBP20.74■□□□□ 0.91
CLN3-259ENST00000637551 FAM184AQ8NB25 1140 aa20.74■□□□□ 0.91
CLN3-259ENST00000637551 FBXO18Q8NFZ0 1043 aa20.74■□□□□ 0.91
CLN3-259ENST00000637551 CYP2W1Q8TAV3 490 aa20.74■□□□□ 0.91
CLN3-259ENST00000637551 KAT6AQ92794 2004 aa20.74■□□□□ 0.91
CLN3-259ENST00000637551 TCEAL9Q9UHQ7 104 aa20.74■□□□□ 0.91
CLN3-259ENST00000637551 KCNJ14Q9UNX9 436 aa20.74■□□□□ 0.91
CLN3-259ENST00000637551 H3BRB1 525 aa20.73■□□□□ 0.91
CLN3-259ENST00000637551 TBX3O15119 743 aa20.73■□□□□ 0.91
CLN3-259ENST00000637551 LGR5O75473 907 aa20.73■□□□□ 0.91
CLN3-259ENST00000637551 ATG7O95352 703 aa20.73■□□□□ 0.91
CLN3-259ENST00000637551 KRT76Q01546 638 aa20.73■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 77.3 ms