RNA–Protein interactions for RNA: ENST00000637110.1

CLN3-257, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 565 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-257ENST00000637110 WNT8AQ9H1J5 351 aa13.37□□□□□ -0.27
CLN3-257ENST00000637110 PSTPIP2Q9H939 334 aa13.37□□□□□ -0.27
CLN3-257ENST00000637110 DDX41Q9UJV9 622 aaKnown RBP13.37□□□□□ -0.27
CLN3-257ENST00000637110 NOD1Q9Y239 953 aa13.37□□□□□ -0.27
CLN3-257ENST00000637110 GRIN2DO15399 1336 aa13.37□□□□□ -0.27
CLN3-257ENST00000637110 EPOPA6NHQ4 379 aa13.36□□□□□ -0.27
CLN3-257ENST00000637110 MMP3P08254 477 aa13.36□□□□□ -0.27
CLN3-257ENST00000637110 SUPT20HL2P0C7V6 817 aa13.36□□□□□ -0.27
CLN3-257ENST00000637110 ARHGAP1Q07960 439 aa13.36□□□□□ -0.27
CLN3-257ENST00000637110 APOBRQ0VD83 1088 aa13.36□□□□□ -0.27
CLN3-257ENST00000637110 LAMC2Q13753 1193 aa13.36□□□□□ -0.27
CLN3-257ENST00000637110 NBPF20Q3BBV1 942 aa13.36□□□□□ -0.27
CLN3-257ENST00000637110 GNPTABQ3T906 1256 aa13.36□□□□□ -0.27
CLN3-257ENST00000637110 BRF1Q92994 677 aa13.36□□□□□ -0.27
CLN3-257ENST00000637110 MLXIPQ9HAP2 919 aa13.36□□□□□ -0.27
CLN3-257ENST00000637110 CD320Q9NPF0 282 aa13.36□□□□□ -0.27
CLN3-257ENST00000637110 RTEL1Q9NZ71 1219 aa13.36□□□□□ -0.27
CLN3-257ENST00000637110 LMCD1Q9NZU5 365 aa13.36□□□□□ -0.27
CLN3-257ENST00000637110 V9GY48 417 aaPredicted RBP13.36□□□□□ -0.27
CLN3-257ENST00000637110 SPDYE3A6NKU9 549 aa13.35□□□□□ -0.27
CLN3-257ENST00000637110 B4GALT4O60513 344 aa13.35□□□□□ -0.27
CLN3-257ENST00000637110 GGPS1O95749 300 aa13.35□□□□□ -0.27
CLN3-257ENST00000637110 METAP2P50579 478 aaKnown RBP eCLIP13.35□□□□□ -0.27
CLN3-257ENST00000637110 NAPAP54920 295 aa13.35□□□□□ -0.27
CLN3-257ENST00000637110 TAP1Q03518 808 aa13.35□□□□□ -0.27
CLN3-257ENST00000637110 GRB10Q13322 594 aa13.35□□□□□ -0.27
CLN3-257ENST00000637110 DGKDQ16760 1214 aa13.35□□□□□ -0.27
CLN3-257ENST00000637110 FAM178BQ8IXR5 827 aa13.35□□□□□ -0.27
CLN3-257ENST00000637110 KCNB2Q92953 911 aa13.35□□□□□ -0.27
CLN3-257ENST00000637110 SCLYQ96I15 445 aa13.35□□□□□ -0.27
CLN3-257ENST00000637110 FBXL18Q96ME1 805 aa13.35□□□□□ -0.27
CLN3-257ENST00000637110 SPATA33Q96N06 139 aa13.35□□□□□ -0.27
CLN3-257ENST00000637110 ALG1Q9BT22 464 aa13.35□□□□□ -0.27
CLN3-257ENST00000637110 ALDH8A1Q9H2A2 487 aaPredicted RBP13.35□□□□□ -0.27
CLN3-257ENST00000637110 TRMT13Q9NUP7 481 aaKnown RBP13.35□□□□□ -0.27
CLN3-257ENST00000637110 KIAA1217Q5T5P2 1943 aa13.35□□□□□ -0.27
CLN3-257ENST00000637110 COL4A4P53420 1690 aaPredicted RBP13.34□□□□□ -0.27
CLN3-257ENST00000637110 CCDC196A0A1B0GTZ2 297 aa13.34□□□□□ -0.27
CLN3-257ENST00000637110 CYP2C9P11712 490 aa13.34□□□□□ -0.27
CLN3-257ENST00000637110 RPS6KB1P23443 525 aa13.34□□□□□ -0.27
CLN3-257ENST00000637110 RFC2P35250 354 aa13.34□□□□□ -0.27
CLN3-257ENST00000637110 UBE2SQ16763 222 aa13.34□□□□□ -0.27
CLN3-257ENST00000637110 NLRX1Q86UT6 975 aa13.34□□□□□ -0.27
CLN3-257ENST00000637110 EHMT1Q9H9B1 1298 aa13.34□□□□□ -0.27
CLN3-257ENST00000637110 CNTNAP5Q8WYK1 1306 aa13.34□□□□□ -0.27
CLN3-257ENST00000637110 PIK3CDO00329 1044 aa13.33□□□□□ -0.28
CLN3-257ENST00000637110 NOP56O00567 594 aaKnown RBP13.33□□□□□ -0.28
CLN3-257ENST00000637110 MEIS2O14770 477 aa13.33□□□□□ -0.28
CLN3-257ENST00000637110 STAM2O75886 525 aa13.33□□□□□ -0.28
CLN3-257ENST00000637110 RGS20O76081 388 aa13.33□□□□□ -0.28
CLN3-257ENST00000637110 ZNF286BP0CG31 522 aa13.33□□□□□ -0.28
CLN3-257ENST00000637110 TGFB3P10600 412 aa13.33□□□□□ -0.28
CLN3-257ENST00000637110 UBA1P22314 1058 aaKnown RBP13.33□□□□□ -0.28
CLN3-257ENST00000637110 CDC27P30260 824 aa13.33□□□□□ -0.28
CLN3-257ENST00000637110 AKAP17AQ02040 695 aaKnown RBP13.33□□□□□ -0.28
CLN3-257ENST00000637110 LEXMQ3ZCV2 418 aa13.33□□□□□ -0.28
CLN3-257ENST00000637110 CELF3Q5SZQ8 465 aaKnown RBP13.33□□□□□ -0.28
CLN3-257ENST00000637110 WWC2Q6AWC2 1192 aa13.33□□□□□ -0.28
CLN3-257ENST00000637110 NFRKBQ6P4R8 1299 aa13.33□□□□□ -0.28
CLN3-257ENST00000637110 DEFB128Q7Z7B8 93 aa13.33□□□□□ -0.28
CLN3-257ENST00000637110 HERC6Q8IVU3 1022 aa13.33□□□□□ -0.28
CLN3-257ENST00000637110 C7orf31Q8N865 590 aa13.33□□□□□ -0.28
CLN3-257ENST00000637110 RETREG2Q8NC44 543 aa13.33□□□□□ -0.28
CLN3-257ENST00000637110 PPTC7Q8NI37 304 aa13.33□□□□□ -0.28
CLN3-257ENST00000637110 UBE2ZQ9H832 354 aaPredicted RBP13.33□□□□□ -0.28
CLN3-257ENST00000637110 MYH7BA7E2Y1 1941 aa13.33□□□□□ -0.28
CLN3-257ENST00000637110 SCN5AQ14524 2016 aa13.32□□□□□ -0.28
CLN3-257ENST00000637110 FIBPO43427 364 aa13.32□□□□□ -0.28
CLN3-257ENST00000637110 DCXO43602 365 aa13.32□□□□□ -0.28
CLN3-257ENST00000637110 ADD1P35611 737 aaKnown RBP13.32□□□□□ -0.28
CLN3-257ENST00000637110 PSEN2P49810 448 aa13.32□□□□□ -0.28
CLN3-257ENST00000637110 ADCY7P51828 1080 aa13.32□□□□□ -0.28
CLN3-257ENST00000637110 MRPS9P82933 396 aaKnown RBP13.32□□□□□ -0.28
CLN3-257ENST00000637110 SP2Q02086 613 aa13.32□□□□□ -0.28
CLN3-257ENST00000637110 SP4Q02446 784 aa13.32□□□□□ -0.28
CLN3-257ENST00000637110 PTPN11Q06124 597 aaPredicted RBP13.32□□□□□ -0.28
CLN3-257ENST00000637110 NEDD9Q14511 834 aa13.32□□□□□ -0.28
CLN3-257ENST00000637110 PUS10Q3MIT2 529 aaKnown RBP13.32□□□□□ -0.28
CLN3-257ENST00000637110 MYSM1Q5VVJ2 828 aa13.32□□□□□ -0.28
CLN3-257ENST00000637110 PCNX4Q63HM2 1172 aa13.32□□□□□ -0.28
CLN3-257ENST00000637110 XRRA1Q6P2D8 792 aa13.32□□□□□ -0.28
CLN3-257ENST00000637110 RUFY3Q7L099 469 aa13.32□□□□□ -0.28
CLN3-257ENST00000637110 EMID1Q96A84 441 aaPredicted RBP13.32□□□□□ -0.28
CLN3-257ENST00000637110 KATNAL1Q9BW62 490 aa13.32□□□□□ -0.28
CLN3-257ENST00000637110 USP26Q9BXU7 913 aa13.32□□□□□ -0.28
CLN3-257ENST00000637110 PCDHA6Q9UN73 950 aa13.32□□□□□ -0.28
CLN3-257ENST00000637110 PCDHA8Q9Y5H6 950 aa13.32□□□□□ -0.28
CLN3-257ENST00000637110 CYP46A1Q9Y6A2 500 aa13.32□□□□□ -0.28
CLN3-257ENST00000637110 WDFY4Q6ZS81 3184 aa13.31□□□□□ -0.28
CLN3-257ENST00000637110 SMCO2A6NFE2 343 aa13.31□□□□□ -0.28
CLN3-257ENST00000637110 SPATA31C2B4DYI2 1134 aa13.31□□□□□ -0.28
CLN3-257ENST00000637110 EPB41L2O43491 1005 aaKnown RBP13.31□□□□□ -0.28
CLN3-257ENST00000637110 PPFIA4O75335 1185 aa13.31□□□□□ -0.28
CLN3-257ENST00000637110 RCAN1P53805 252 aa13.31□□□□□ -0.28
CLN3-257ENST00000637110 CCT2P78371 535 aaKnown RBP13.31□□□□□ -0.28
CLN3-257ENST00000637110 MFSD10Q14728 455 aa13.31□□□□□ -0.28
CLN3-257ENST00000637110 PTGISQ16647 500 aa13.31□□□□□ -0.28
CLN3-257ENST00000637110 KIAA0753Q2KHM9 967 aa13.31□□□□□ -0.28
CLN3-257ENST00000637110 HSDL1Q3SXM5 330 aa13.31□□□□□ -0.28
CLN3-257ENST00000637110 CYFIP1Q7L576 1253 aa13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms