RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 DHX15O43143 795 aaKnown RBP20.67■□□□□ 0.9
CLN3-254ENST00000637050 MYL1P05976 194 aa20.67■□□□□ 0.9
CLN3-254ENST00000637050 RPA1P27694 616 aa20.67■□□□□ 0.9
CLN3-254ENST00000637050 KCTD2Q14681 263 aa20.67■□□□□ 0.9
CLN3-254ENST00000637050 RNF214Q8ND24 703 aa20.67■□□□□ 0.9
CLN3-254ENST00000637050 MMP19Q99542 508 aa20.67■□□□□ 0.9
CLN3-254ENST00000637050 DNAJC25Q9H1X3 360 aa20.67■□□□□ 0.9
CLN3-254ENST00000637050 EFCC1Q9HA90 598 aa20.67■□□□□ 0.9
CLN3-254ENST00000637050 MED24O75448 989 aa20.67■□□□□ 0.9
CLN3-254ENST00000637050 RGS20O76081 388 aa20.67■□□□□ 0.9
CLN3-254ENST00000637050 FCER1AP12319 257 aa20.67■□□□□ 0.9
CLN3-254ENST00000637050 EDNRBP24530 442 aa20.67■□□□□ 0.9
CLN3-254ENST00000637050 CASP1P29466 404 aa20.67■□□□□ 0.9
CLN3-254ENST00000637050 INHBEP58166 350 aa20.67■□□□□ 0.9
CLN3-254ENST00000637050 ITGB3BPQ13352 177 aaPredicted RBP20.67■□□□□ 0.9
CLN3-254ENST00000637050 NLRX1Q86UT6 975 aa20.67■□□□□ 0.9
CLN3-254ENST00000637050 TRIML1Q8N9V2 468 aa20.67■□□□□ 0.9
CLN3-254ENST00000637050 FAM200AQ8TCP9 573 aa20.67■□□□□ 0.9
CLN3-254ENST00000637050 GSDMAQ96QA5 445 aa20.67■□□□□ 0.9
CLN3-254ENST00000637050 POLR3CQ9BUI4 534 aaPredicted RBP20.67■□□□□ 0.9
CLN3-254ENST00000637050 UNC45AQ9H3U1 944 aa20.67■□□□□ 0.9
CLN3-254ENST00000637050 TBC1D22BQ9NU19 505 aa20.67■□□□□ 0.9
CLN3-254ENST00000637050 MAN1B1Q9UKM7 699 aa20.67■□□□□ 0.9
CLN3-254ENST00000637050 ABT1Q9ULW3 272 aaKnown RBP20.67■□□□□ 0.9
CLN3-254ENST00000637050 SPATA31C1P0DKV0 1188 aa20.66■□□□□ 0.9
CLN3-254ENST00000637050 XRCC6P12956 609 aaKnown RBP eCLIP20.66■□□□□ 0.9
CLN3-254ENST00000637050 CUL4BQ13620 913 aa20.66■□□□□ 0.9
CLN3-254ENST00000637050 STXBP2Q15833 593 aa20.66■□□□□ 0.9
CLN3-254ENST00000637050 FAM110CQ1W6H9 321 aa20.66■□□□□ 0.9
CLN3-254ENST00000637050 DPCR1Q3MIW9 517 aa20.66■□□□□ 0.9
CLN3-254ENST00000637050 C11orf57Q6ZUT1 292 aaPredicted RBP20.66■□□□□ 0.9
CLN3-254ENST00000637050 KCNK18Q7Z418 384 aa20.66■□□□□ 0.9
CLN3-254ENST00000637050 CATSPER3Q86XQ3 398 aa20.66■□□□□ 0.9
CLN3-254ENST00000637050 LARP4BQ92615 738 aaKnown RBP20.66■□□□□ 0.9
CLN3-254ENST00000637050 RAD54LQ92698 747 aa20.66■□□□□ 0.9
CLN3-254ENST00000637050 ADGRA2Q96PE1 1338 aa20.66■□□□□ 0.9
CLN3-254ENST00000637050 POTEB3A0JP26 581 aa20.65■□□□□ 0.9
CLN3-254ENST00000637050 SEMA3FQ13275 785 aa20.65■□□□□ 0.9
CLN3-254ENST00000637050 MORC3Q14149 939 aa20.65■□□□□ 0.9
CLN3-254ENST00000637050 WDR78Q5VTH9 848 aa20.65■□□□□ 0.9
CLN3-254ENST00000637050 POTEBQ6S5H4 581 aa20.65■□□□□ 0.9
CLN3-254ENST00000637050 FGD4Q96M96 766 aa20.65■□□□□ 0.9
CLN3-254ENST00000637050 HSD17B14Q9BPX1 270 aa20.65■□□□□ 0.9
CLN3-254ENST00000637050 EIF2AK1Q9BQI3 630 aaKnown RBP20.65■□□□□ 0.9
CLN3-254ENST00000637050 BLZF1Q9H2G9 400 aa20.65■□□□□ 0.9
CLN3-254ENST00000637050 ATP9AO75110 1047 aa20.64■□□□□ 0.9
CLN3-254ENST00000637050 EIF3JO75822 258 aaKnown RBP20.64■□□□□ 0.9
CLN3-254ENST00000637050 PGK2P07205 417 aa20.64■□□□□ 0.9
CLN3-254ENST00000637050 DEKP35659 375 aaKnown RBP20.64■□□□□ 0.9
CLN3-254ENST00000637050 ZNF165P49910 485 aa20.64■□□□□ 0.9
CLN3-254ENST00000637050 FSTL1Q12841 308 aa20.64■□□□□ 0.9
CLN3-254ENST00000637050 GNPTABQ3T906 1256 aa20.64■□□□□ 0.9
CLN3-254ENST00000637050 ISM2Q6H9L7 571 aa20.64■□□□□ 0.9
CLN3-254ENST00000637050 SV2BQ7L1I2 683 aa20.64■□□□□ 0.9
CLN3-254ENST00000637050 IFNL1Q8IU54 200 aa20.64■□□□□ 0.9
CLN3-254ENST00000637050 CDHR1Q96JP9 859 aa20.64■□□□□ 0.9
CLN3-254ENST00000637050 PKD2L1Q9P0L9 805 aa20.64■□□□□ 0.9
CLN3-254ENST00000637050 KIAA1024Q9UPX6 916 aa20.64■□□□□ 0.9
CLN3-254ENST00000637050 B4DLN1 442 aa20.64■□□□□ 0.89
CLN3-254ENST00000637050 CHMP2AO43633 222 aa20.64■□□□□ 0.89
CLN3-254ENST00000637050 BMP6P22004 513 aa20.64■□□□□ 0.89
CLN3-254ENST00000637050 AMPD3Q01432 767 aa20.64■□□□□ 0.89
CLN3-254ENST00000637050 MCM6Q14566 821 aa20.64■□□□□ 0.89
CLN3-254ENST00000637050 EPHA7Q15375 998 aa20.64■□□□□ 0.89
CLN3-254ENST00000637050 ABRAQ8N0Z2 381 aa20.64■□□□□ 0.89
CLN3-254ENST00000637050 KCTD17Q8N5Z5 321 aa20.64■□□□□ 0.89
CLN3-254ENST00000637050 C7orf25Q9BPX7 421 aa20.64■□□□□ 0.89
CLN3-254ENST00000637050 CBX8Q9HC52 389 aa20.64■□□□□ 0.89
CLN3-254ENST00000637050 TUFT1Q9NNX1 390 aa20.64■□□□□ 0.89
CLN3-254ENST00000637050 LOC102724159A0A0B4J2E5 919 aa20.63■□□□□ 0.89
CLN3-254ENST00000637050 SPATA31C2B4DYI2 1134 aa20.63■□□□□ 0.89
CLN3-254ENST00000637050 STRNO43815 780 aa20.63■□□□□ 0.89
CLN3-254ENST00000637050 MUTP22033 750 aa20.63■□□□□ 0.89
CLN3-254ENST00000637050 ICAM3P32942 547 aa20.63■□□□□ 0.89
CLN3-254ENST00000637050 PWP2Q15269 919 aaKnown RBP20.63■□□□□ 0.89
CLN3-254ENST00000637050 UVSSAQ2YD98 709 aa20.63■□□□□ 0.89
CLN3-254ENST00000637050 TRIM9Q9C026 710 aa20.63■□□□□ 0.89
CLN3-254ENST00000637050 NAT10Q9H0A0 1025 aaKnown RBP20.63■□□□□ 0.89
CLN3-254ENST00000637050 LRRC37A2A6NM11 1700 aa20.63■□□□□ 0.89
CLN3-254ENST00000637050 POTEFA5A3E0 1075 aa20.62■□□□□ 0.89
CLN3-254ENST00000637050 DDX39AO00148 427 aaKnown RBP20.62■□□□□ 0.89
CLN3-254ENST00000637050 SLITRK3O94933 977 aa20.62■□□□□ 0.89
CLN3-254ENST00000637050 KCNA2P16389 499 aa20.62■□□□□ 0.89
CLN3-254ENST00000637050 PDE4DQ08499 809 aa20.62■□□□□ 0.89
CLN3-254ENST00000637050 SREBF2Q12772 1141 aa20.62■□□□□ 0.89
CLN3-254ENST00000637050 TAF1CQ15572 869 aaPredicted RBP20.62■□□□□ 0.89
CLN3-254ENST00000637050 POTEGQ6S5H5 508 aa20.62■□□□□ 0.89
CLN3-254ENST00000637050 MPHOSPH6Q99547 160 aaKnown RBP20.62■□□□□ 0.89
CLN3-254ENST00000637050 RGL1Q9NZL6 768 aa20.62■□□□□ 0.89
CLN3-254ENST00000637050 E9PMD0 336 aa20.61■□□□□ 0.89
CLN3-254ENST00000637050 RPN1P04843 607 aaKnown RBP20.61■□□□□ 0.89
CLN3-254ENST00000637050 IQCB1Q15051 598 aa20.61■□□□□ 0.89
CLN3-254ENST00000637050 CNNM4Q6P4Q7 775 aa20.61■□□□□ 0.89
CLN3-254ENST00000637050 NEK9Q8TD19 979 aa20.61■□□□□ 0.89
CLN3-254ENST00000637050 MORC4Q8TE76 937 aa20.61■□□□□ 0.89
CLN3-254ENST00000637050 DYDC2Q96IM9 177 aa20.61■□□□□ 0.89
CLN3-254ENST00000637050 BPIFA3Q9BQP9 254 aa20.61■□□□□ 0.89
CLN3-254ENST00000637050 LRRC27Q9C0I9 530 aa20.61■□□□□ 0.89
CLN3-254ENST00000637050 NFASCO94856 1347 aa20.61■□□□□ 0.89
CLN3-254ENST00000637050 ZNFX1Q9P2E3 1918 aaKnown RBP20.61■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms