RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 POLR3CQ9BUI4 534 aaPredicted RBP18.87■□□□□ 0.61
CLN3-252ENST00000636907 LCTP09848 1927 aa18.87■□□□□ 0.61
CLN3-252ENST00000636907 NR3C2P08235 984 aa18.86■□□□□ 0.61
CLN3-252ENST00000636907 PLA2G4BP0C869 781 aa18.86■□□□□ 0.61
CLN3-252ENST00000636907 CCND2P30279 289 aa18.86■□□□□ 0.61
CLN3-252ENST00000636907 SEMA3FQ13275 785 aa18.86■□□□□ 0.61
CLN3-252ENST00000636907 MTMR1Q13613 665 aa18.86■□□□□ 0.61
CLN3-252ENST00000636907 XRRA1Q6P2D8 792 aa18.86■□□□□ 0.61
CLN3-252ENST00000636907 MOV10L1Q9BXT6 1211 aaKnown RBP18.86■□□□□ 0.61
CLN3-252ENST00000636907 LRRC27Q9C0I9 530 aa18.86■□□□□ 0.61
CLN3-252ENST00000636907 TXNRD2Q9NNW7 524 aa18.86■□□□□ 0.61
CLN3-252ENST00000636907 FBXO40Q9UH90 709 aa18.86■□□□□ 0.61
CLN3-252ENST00000636907 DDX39AO00148 427 aaKnown RBP18.85■□□□□ 0.61
CLN3-252ENST00000636907 PSMC6P62333 389 aa18.85■□□□□ 0.61
CLN3-252ENST00000636907 CYP4A11Q02928 519 aa18.85■□□□□ 0.61
CLN3-252ENST00000636907 MKRN3Q13064 507 aaKnown RBP18.85■□□□□ 0.61
CLN3-252ENST00000636907 ITGB3BPQ13352 177 aaPredicted RBP18.85■□□□□ 0.61
CLN3-252ENST00000636907 CNNM4Q6P4Q7 775 aa18.85■□□□□ 0.61
CLN3-252ENST00000636907 DYMQ7RTS9 669 aa18.85■□□□□ 0.61
CLN3-252ENST00000636907 NCAPG2Q86XI2 1143 aa18.85■□□□□ 0.61
CLN3-252ENST00000636907 ANKRD35Q8N283 1001 aa18.85■□□□□ 0.61
CLN3-252ENST00000636907 CCDC47Q96A33 483 aaKnown RBP18.85■□□□□ 0.61
CLN3-252ENST00000636907 TRIM44Q96DX7 344 aaPredicted RBP18.85■□□□□ 0.61
CLN3-252ENST00000636907 HSD17B14Q9BPX1 270 aa18.85■□□□□ 0.61
CLN3-252ENST00000636907 FANCLQ9NW38 375 aa18.85■□□□□ 0.61
CLN3-252ENST00000636907 RGL1Q9NZL6 768 aa18.85■□□□□ 0.61
CLN3-252ENST00000636907 RBPJLQ9UBG7 517 aa18.85■□□□□ 0.61
CLN3-252ENST00000636907 DHX15O43143 795 aaKnown RBP18.85■□□□□ 0.61
CLN3-252ENST00000636907 SSBP05455 408 aaKnown RBP eCLIP18.85■□□□□ 0.61
CLN3-252ENST00000636907 STX17P56962 302 aa18.85■□□□□ 0.61
CLN3-252ENST00000636907 PDE4DQ08499 809 aa18.85■□□□□ 0.61
CLN3-252ENST00000636907 DDX12PQ92771 950 aa18.85■□□□□ 0.61
CLN3-252ENST00000636907 DYDC2Q96IM9 177 aa18.85■□□□□ 0.61
CLN3-252ENST00000636907 MS4A4AQ96JQ5 239 aa18.85■□□□□ 0.61
CLN3-252ENST00000636907 EXOC1Q9NV70 894 aa18.85■□□□□ 0.61
CLN3-252ENST00000636907 CTNND2Q9UQB3 1225 aa18.85■□□□□ 0.61
CLN3-252ENST00000636907 SYNRGQ9UMZ2 1314 aa18.85■□□□□ 0.61
CLN3-252ENST00000636907 TESPA1A2RU30 521 aaPredicted RBP18.84■□□□□ 0.61
CLN3-252ENST00000636907 DCAF8L1A6NGE4 600 aa18.84■□□□□ 0.61
CLN3-252ENST00000636907 SLITRK3O94933 977 aa18.84■□□□□ 0.61
CLN3-252ENST00000636907 ITGBL1O95965 494 aaPredicted RBP18.84■□□□□ 0.61
CLN3-252ENST00000636907 CETPP11597 493 aa18.84■□□□□ 0.61
CLN3-252ENST00000636907 ATP1A3P13637 1013 aa18.84■□□□□ 0.61
CLN3-252ENST00000636907 PRCPP42785 496 aa18.84■□□□□ 0.61
CLN3-252ENST00000636907 GTF2A2P52657 109 aa18.84■□□□□ 0.61
CLN3-252ENST00000636907 UNC13DQ70J99 1090 aa18.84■□□□□ 0.61
CLN3-252ENST00000636907 GIMAP8Q8ND71 665 aaPredicted RBP18.84■□□□□ 0.61
CLN3-252ENST00000636907 R3HDMLQ9H3Y0 253 aa18.84■□□□□ 0.61
CLN3-252ENST00000636907 TUFT1Q9NNX1 390 aa18.84■□□□□ 0.61
CLN3-252ENST00000636907 NFE2L3Q9Y4A8 694 aa18.84■□□□□ 0.61
CLN3-252ENST00000636907 PFASO15067 1338 aa18.84■□□□□ 0.61
CLN3-252ENST00000636907 CCL15-CCL14A0A0B4J2E2 113 aa18.83■□□□□ 0.61
CLN3-252ENST00000636907 PVALEFA0A1B0GWK0 134 aa18.83■□□□□ 0.61
CLN3-252ENST00000636907 ERCC3P19447 782 aa18.83■□□□□ 0.61
CLN3-252ENST00000636907 SLC12A3P55017 1021 aa18.83■□□□□ 0.61
CLN3-252ENST00000636907 CTTNQ14247 550 aaKnown RBP18.83■□□□□ 0.61
CLN3-252ENST00000636907 EPHA7Q15375 998 aa18.83■□□□□ 0.61
CLN3-252ENST00000636907 CCL15Q16663 113 aa18.83■□□□□ 0.61
CLN3-252ENST00000636907 Q3C1V9 767 aa18.83■□□□□ 0.61
CLN3-252ENST00000636907 CST9Q5W186 159 aa18.83■□□□□ 0.61
CLN3-252ENST00000636907 GPBP1Q86WP2 473 aa18.83■□□□□ 0.61
CLN3-252ENST00000636907 ADSSL1Q8N142 457 aa18.83■□□□□ 0.61
CLN3-252ENST00000636907 DNM3Q9UQ16 869 aa18.83■□□□□ 0.61
CLN3-252ENST00000636907 MAPK8IP1Q9UQF2 711 aa18.83■□□□□ 0.61
CLN3-252ENST00000636907 ASTN1O14525 1302 aa18.82■□□□□ 0.6
CLN3-252ENST00000636907 ATP9AO75110 1047 aa18.82■□□□□ 0.6
CLN3-252ENST00000636907 SLC25A27O95847 323 aa18.82■□□□□ 0.6
CLN3-252ENST00000636907 CYP2C8P10632 490 aa18.82■□□□□ 0.6
CLN3-252ENST00000636907 FCER1AP12319 257 aa18.82■□□□□ 0.6
CLN3-252ENST00000636907 CNTN2Q02246 1040 aa18.82■□□□□ 0.6
CLN3-252ENST00000636907 STK4Q13043 487 aa18.82■□□□□ 0.6
CLN3-252ENST00000636907 CHADLQ6NUI6 762 aa18.82■□□□□ 0.6
CLN3-252ENST00000636907 GPRASP2Q96D09 838 aa18.82■□□□□ 0.6
CLN3-252ENST00000636907 DNAJC19Q96DA6 116 aa18.82■□□□□ 0.6
CLN3-252ENST00000636907 MRFAP1L1Q96HT8 127 aa18.82■□□□□ 0.6
CLN3-252ENST00000636907 INPP4AQ96PE3 977 aaPredicted RBP18.82■□□□□ 0.6
CLN3-252ENST00000636907 TBC1D22BQ9NU19 505 aa18.82■□□□□ 0.6
CLN3-252ENST00000636907 PNMA3Q9UL41 463 aa18.82■□□□□ 0.6
CLN3-252ENST00000636907 RGS20O76081 388 aa18.82■□□□□ 0.6
CLN3-252ENST00000636907 PTMAP06454 111 aaKnown RBP18.82■□□□□ 0.6
CLN3-252ENST00000636907 CYP11B2P19099 503 aa18.82■□□□□ 0.6
CLN3-252ENST00000636907 FANCCQ00597 558 aa18.82■□□□□ 0.6
CLN3-252ENST00000636907 PAK1Q13153 545 aa18.82■□□□□ 0.6
CLN3-252ENST00000636907 SPATA1Q5VX52 437 aa18.82■□□□□ 0.6
CLN3-252ENST00000636907 SPRYD7Q5W111 196 aa18.82■□□□□ 0.6
CLN3-252ENST00000636907 MIER3Q7Z3K6 550 aa18.82■□□□□ 0.6
CLN3-252ENST00000636907 ARHGAP30Q7Z6I6 1101 aaPredicted RBP18.82■□□□□ 0.6
CLN3-252ENST00000636907 NLRX1Q86UT6 975 aa18.82■□□□□ 0.6
CLN3-252ENST00000636907 TPH2Q8IWU9 490 aa18.82■□□□□ 0.6
CLN3-252ENST00000636907 KCTD17Q8N5Z5 321 aa18.82■□□□□ 0.6
CLN3-252ENST00000636907 SYT2Q8N9I0 419 aaPredicted RBP18.82■□□□□ 0.6
CLN3-252ENST00000636907 SPC24Q8NBT2 197 aa18.82■□□□□ 0.6
CLN3-252ENST00000636907 DNERQ8NFT8 737 aa18.82■□□□□ 0.6
CLN3-252ENST00000636907 NELFBQ8WX92 580 aa18.82■□□□□ 0.6
CLN3-252ENST00000636907 BRI3BPQ8WY22 251 aa18.82■□□□□ 0.6
CLN3-252ENST00000636907 HPS3Q969F9 1004 aa18.82■□□□□ 0.6
CLN3-252ENST00000636907 BMP2KQ9NSY1 1161 aaPredicted RBP18.82■□□□□ 0.6
CLN3-252ENST00000636907 RWDD2AQ9UIY3 292 aa18.82■□□□□ 0.6
CLN3-252ENST00000636907 BTBD19C9JJ37 291 aa18.81■□□□□ 0.6
CLN3-252ENST00000636907 PDHXO00330 501 aa18.81■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms