RNA–Protein interactions for RNA: ENST00000636876.1

CLN6-216, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 5

Gene CLN6, Length 655 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-216ENST00000636876 ZDHHC9Q9Y397 364 aa18.12■□□□□ 0.49
CLN6-216ENST00000636876 PCDHB6Q9Y5E3 794 aa18.12■□□□□ 0.49
CLN6-216ENST00000636876 NFASCO94856 1347 aa18.12■□□□□ 0.49
CLN6-216ENST00000636876 SYNRGQ9UMZ2 1314 aa18.12■□□□□ 0.49
CLN6-216ENST00000636876 POTEFA5A3E0 1075 aa18.11■□□□□ 0.49
CLN6-216ENST00000636876 TBX3O15119 743 aa18.11■□□□□ 0.49
CLN6-216ENST00000636876 SORBS3O60504 671 aa18.11■□□□□ 0.49
CLN6-216ENST00000636876 ADAMTS4O75173 837 aa18.11■□□□□ 0.49
CLN6-216ENST00000636876 PGK1P00558 417 aa18.11■□□□□ 0.49
CLN6-216ENST00000636876 NKX3-2P78367 333 aa18.11■□□□□ 0.49
CLN6-216ENST00000636876 LAMC2Q13753 1193 aa18.11■□□□□ 0.49
CLN6-216ENST00000636876 FAM173BQ6P4H8 233 aa18.11■□□□□ 0.49
CLN6-216ENST00000636876 METTL7BQ6UX53 244 aa18.11■□□□□ 0.49
CLN6-216ENST00000636876 CYFIP1Q7L576 1253 aa18.11■□□□□ 0.49
CLN6-216ENST00000636876 U2AF1L4Q8WU68 220 aaKnown RBP18.11■□□□□ 0.49
CLN6-216ENST00000636876 SLC5A5Q92911 643 aa18.11■□□□□ 0.49
CLN6-216ENST00000636876 FAM20AQ96MK3 541 aa18.11■□□□□ 0.49
CLN6-216ENST00000636876 SDF4Q9BRK5 362 aa18.11■□□□□ 0.49
CLN6-216ENST00000636876 CRISPLD2Q9H0B8 497 aa18.11■□□□□ 0.49
CLN6-216ENST00000636876 MLXIPQ9HAP2 919 aa18.11■□□□□ 0.49
CLN6-216ENST00000636876 SPC25Q9HBM1 224 aa18.11■□□□□ 0.49
CLN6-216ENST00000636876 EIF4ENIF1Q9NRA8 985 aaKnown RBP18.11■□□□□ 0.49
CLN6-216ENST00000636876 OGDHLQ9ULD0 1010 aa18.11■□□□□ 0.49
CLN6-216ENST00000636876 DOCK5Q9H7D0 1870 aa18.1■□□□□ 0.49
CLN6-216ENST00000636876 DHX15O43143 795 aaKnown RBP18.1■□□□□ 0.49
CLN6-216ENST00000636876 FARP2O94887 1054 aaPredicted RBP18.1■□□□□ 0.49
CLN6-216ENST00000636876 SGPL1O95470 568 aa18.1■□□□□ 0.49
CLN6-216ENST00000636876 GJA8P48165 433 aa18.1■□□□□ 0.49
CLN6-216ENST00000636876 NUCB2P80303 420 aa18.1■□□□□ 0.49
CLN6-216ENST00000636876 CALCRLQ16602 461 aa18.1■□□□□ 0.49
CLN6-216ENST00000636876 RIT2Q99578 217 aa18.1■□□□□ 0.49
CLN6-216ENST00000636876 TMEM60Q9H2L4 133 aa18.1■□□□□ 0.49
CLN6-216ENST00000636876 TBC1D22BQ9NU19 505 aa18.1■□□□□ 0.49
CLN6-216ENST00000636876 CIZ1Q9ULV3 898 aaPredicted RBP18.1■□□□□ 0.49
CLN6-216ENST00000636876 CTAGE5O15320 804 aa18.09■□□□□ 0.49
CLN6-216ENST00000636876 BAG4O95429 457 aaKnown RBP18.09■□□□□ 0.49
CLN6-216ENST00000636876 C6orf222P0C671 652 aaPredicted RBP18.09■□□□□ 0.49
CLN6-216ENST00000636876 IRX5P78411 483 aaPredicted RBP18.09■□□□□ 0.49
CLN6-216ENST00000636876 LRRC41Q15345 812 aa18.09■□□□□ 0.49
CLN6-216ENST00000636876 FSCN1Q16658 493 aaKnown RBP18.09■□□□□ 0.49
CLN6-216ENST00000636876 PRPF38BQ5VTL8 546 aaKnown RBP18.09■□□□□ 0.49
CLN6-216ENST00000636876 LRCH2Q5VUJ6 765 aa18.09■□□□□ 0.49
CLN6-216ENST00000636876 C4orf32Q8N8J7 132 aa18.09■□□□□ 0.49
CLN6-216ENST00000636876 KLHDC9Q8NEP7 349 aa18.09■□□□□ 0.49
CLN6-216ENST00000636876 PPTC7Q8NI37 304 aa18.09■□□□□ 0.49
CLN6-216ENST00000636876 AFG1LQ8WV93 481 aa18.09■□□□□ 0.49
CLN6-216ENST00000636876 HAS1Q92839 578 aa18.09■□□□□ 0.49
CLN6-216ENST00000636876 GJA10Q969M2 543 aa18.09■□□□□ 0.49
CLN6-216ENST00000636876 SPATA33Q96N06 139 aa18.09■□□□□ 0.49
CLN6-216ENST00000636876 MTMR9Q96QG7 549 aa18.09■□□□□ 0.49
CLN6-216ENST00000636876 JPH1Q9HDC5 661 aaPredicted RBP18.09■□□□□ 0.49
CLN6-216ENST00000636876 SLC9A2Q9UBY0 812 aa18.09■□□□□ 0.49
CLN6-216ENST00000636876 BRCA2P51587 3418 aa18.08■□□□□ 0.49
CLN6-216ENST00000636876 MYADML2A6NDP7 307 aa18.08■□□□□ 0.48
CLN6-216ENST00000636876 A6NJR5 290 aa18.08■□□□□ 0.48
CLN6-216ENST00000636876 MARCH6O60337 910 aa18.08■□□□□ 0.48
CLN6-216ENST00000636876 GAS7O60861 476 aa18.08■□□□□ 0.48
CLN6-216ENST00000636876 PSMD10O75832 226 aa18.08■□□□□ 0.48
CLN6-216ENST00000636876 TFRCP02786 760 aaKnown RBP18.08■□□□□ 0.48
CLN6-216ENST00000636876 CAPN2P17655 700 aa18.08■□□□□ 0.48
CLN6-216ENST00000636876 CST5P28325 142 aaPredicted RBP18.08■□□□□ 0.48
CLN6-216ENST00000636876 CPT1AP50416 773 aa18.08■□□□□ 0.48
CLN6-216ENST00000636876 BEX3Q00994 111 aa18.08■□□□□ 0.48
CLN6-216ENST00000636876 PTGDRQ13258 359 aa18.08■□□□□ 0.48
CLN6-216ENST00000636876 HSDL1Q3SXM5 330 aa18.08■□□□□ 0.48
CLN6-216ENST00000636876 BRDTQ58F21 947 aaPredicted RBP18.08■□□□□ 0.48
CLN6-216ENST00000636876 RNF180Q86T96 592 aa18.08■□□□□ 0.48
CLN6-216ENST00000636876 SLFN12Q8IYM2 578 aa18.08■□□□□ 0.48
CLN6-216ENST00000636876 ARRDC4Q8NCT1 418 aa18.08■□□□□ 0.48
CLN6-216ENST00000636876 TEKT3Q9BXF9 490 aa18.08■□□□□ 0.48
CLN6-216ENST00000636876 MKI67P46013 3256 aaKnown RBP18.07■□□□□ 0.48
CLN6-216ENST00000636876 DDX39AO00148 427 aaKnown RBP18.07■□□□□ 0.48
CLN6-216ENST00000636876 OR52Z1P0C646 297 aa18.07■□□□□ 0.48
CLN6-216ENST00000636876 KRT76Q01546 638 aa18.07■□□□□ 0.48
CLN6-216ENST00000636876 SP4Q02446 784 aa18.07■□□□□ 0.48
CLN6-216ENST00000636876 GNASQ5JWF2 1037 aa18.07■□□□□ 0.48
CLN6-216ENST00000636876 GPR20Q99678 358 aa18.07■□□□□ 0.48
CLN6-216ENST00000636876 TCEAL9Q9UHQ7 104 aa18.07■□□□□ 0.48
CLN6-216ENST00000636876 TELO2Q9Y4R8 837 aa18.07■□□□□ 0.48
CLN6-216ENST00000636876 MYH15Q9Y2K3 1946 aa18.07■□□□□ 0.48
CLN6-216ENST00000636876 LAD1O00515 517 aa18.06■□□□□ 0.48
CLN6-216ENST00000636876 NOP56O00567 594 aaKnown RBP18.06■□□□□ 0.48
CLN6-216ENST00000636876 BMP15O95972 392 aa18.06■□□□□ 0.48
CLN6-216ENST00000636876 CCNE2O96020 404 aa18.06■□□□□ 0.48
CLN6-216ENST00000636876 MYCNP04198 464 aaPredicted RBP18.06■□□□□ 0.48
CLN6-216ENST00000636876 MMP3P08254 477 aa18.06■□□□□ 0.48
CLN6-216ENST00000636876 HOXD8P13378 290 aaPredicted RBP18.06■□□□□ 0.48
CLN6-216ENST00000636876 ACTR2P61160 394 aa18.06■□□□□ 0.48
CLN6-216ENST00000636876 SF3A1Q15459 793 aaKnown RBP18.06■□□□□ 0.48
CLN6-216ENST00000636876 CCSAPQ6IQ19 270 aaPredicted RBP18.06■□□□□ 0.48
CLN6-216ENST00000636876 ZNF746Q6NUN9 644 aaPredicted RBP18.06■□□□□ 0.48
CLN6-216ENST00000636876 ZNF396Q96N95 335 aaPredicted RBP18.06■□□□□ 0.48
CLN6-216ENST00000636876 USP28Q96RU2 1077 aa18.06■□□□□ 0.48
CLN6-216ENST00000636876 FTOQ9C0B1 505 aaKnown RBP eCLIP18.06■□□□□ 0.48
CLN6-216ENST00000636876 UNC45AQ9H3U1 944 aa18.06■□□□□ 0.48
CLN6-216ENST00000636876 VAV3Q9UKW4 847 aa18.06■□□□□ 0.48
CLN6-216ENST00000636876 CEP131Q9UPN4 1083 aa18.06■□□□□ 0.48
CLN6-216ENST00000636876 CLIC4Q9Y696 253 aa18.06■□□□□ 0.48
CLN6-216ENST00000636876 ELP1O95163 1332 aa18.05■□□□□ 0.48
CLN6-216ENST00000636876 GSTTP1A0A1W2PQM5 241 aa18.05■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms