RNA–Protein interactions for RNA: ENST00000636759.1

SCN1A-213, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 3,606 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-213ENST00000636759 WDR60Q8WVS4 1066 aa7.47□□□□□ -1.21
SCN1A-213ENST00000636759 PPP1R14BQ96C90 147 aa7.47□□□□□ -1.21
SCN1A-213ENST00000636759 ZMAT2Q96NC0 199 aaKnown RBP7.47□□□□□ -1.21
SCN1A-213ENST00000636759 NR1H4Q96RI1 486 aaPredicted RBP7.47□□□□□ -1.21
SCN1A-213ENST00000636759 ELAC2Q9BQ52 826 aaKnown RBP7.47□□□□□ -1.21
SCN1A-213ENST00000636759 LARSQ9P2J5 1176 aaKnown RBP7.47□□□□□ -1.21
SCN1A-213ENST00000636759 SLC12A6Q9UHW9 1150 aa7.47□□□□□ -1.21
SCN1A-213ENST00000636759 MAN1B1Q9UKM7 699 aa7.47□□□□□ -1.21
SCN1A-213ENST00000636759 KCNH3Q9ULD8 1083 aa7.47□□□□□ -1.21
SCN1A-213ENST00000636759 ATRNO75882 1429 aa7.46□□□□□ -1.21
SCN1A-213ENST00000636759 DOT1LQ8TEK3 1739 aa7.46□□□□□ -1.21
SCN1A-213ENST00000636759 TMEM221A6NGB7 291 aa7.46□□□□□ -1.21
SCN1A-213ENST00000636759 HNRNPRO43390 633 aaKnown RBP7.46□□□□□ -1.21
SCN1A-213ENST00000636759 BAG3O95817 575 aa7.46□□□□□ -1.21
SCN1A-213ENST00000636759 ACADSP16219 412 aa7.46□□□□□ -1.21
SCN1A-213ENST00000636759 TRIM21P19474 475 aaKnown RBP7.46□□□□□ -1.21
SCN1A-213ENST00000636759 ERCC5P28715 1186 aaPredicted RBP7.46□□□□□ -1.21
SCN1A-213ENST00000636759 CCT6AP40227 531 aaKnown RBP7.46□□□□□ -1.21
SCN1A-213ENST00000636759 CARSP49589 748 aaKnown RBP7.46□□□□□ -1.21
SCN1A-213ENST00000636759 STX17P56962 302 aa7.46□□□□□ -1.21
SCN1A-213ENST00000636759 OTUD7BQ6GQQ9 843 aa7.46□□□□□ -1.21
SCN1A-213ENST00000636759 ANKRD13DQ6ZTN6 518 aa7.46□□□□□ -1.21
SCN1A-213ENST00000636759 SDR16C5Q8N3Y7 309 aa7.46□□□□□ -1.21
SCN1A-213ENST00000636759 SNRNP27Q8WVK2 155 aaKnown RBP7.46□□□□□ -1.21
SCN1A-213ENST00000636759 SPIRE2Q8WWL2 714 aa7.46□□□□□ -1.21
SCN1A-213ENST00000636759 IQCDQ96DY2 449 aa7.46□□□□□ -1.21
SCN1A-213ENST00000636759 DHRS1Q96LJ7 313 aa7.46□□□□□ -1.21
SCN1A-213ENST00000636759 XPO6Q96QU8 1125 aaKnown RBP7.46□□□□□ -1.21
SCN1A-213ENST00000636759 EIF4ENIF1Q9NRA8 985 aaKnown RBP7.46□□□□□ -1.21
SCN1A-213ENST00000636759 UBAP1Q9NZ09 502 aa7.46□□□□□ -1.21
SCN1A-213ENST00000636759 C9orf78Q9NZ63 289 aaPredicted RBP7.46□□□□□ -1.21
SCN1A-213ENST00000636759 PDP2Q9P2J9 529 aa7.46□□□□□ -1.21
SCN1A-213ENST00000636759 SLC4A7Q9Y6M7 1214 aa7.46□□□□□ -1.21
SCN1A-213ENST00000636759 NDUFB9Q9Y6M9 179 aa7.46□□□□□ -1.21
SCN1A-213ENST00000636759 BCL9LQ86UU0 1499 aa7.46□□□□□ -1.22
SCN1A-213ENST00000636759 LSM1O15116 133 aaKnown RBP7.46□□□□□ -1.22
SCN1A-213ENST00000636759 UBOX5O94941 541 aa7.46□□□□□ -1.22
SCN1A-213ENST00000636759 CDC27P30260 824 aa7.46□□□□□ -1.22
SCN1A-213ENST00000636759 PEX5P50542 639 aa7.46□□□□□ -1.22
SCN1A-213ENST00000636759 PLCD1P51178 756 aa7.46□□□□□ -1.22
SCN1A-213ENST00000636759 NCALDP61601 193 aa7.46□□□□□ -1.22
SCN1A-213ENST00000636759 MCL1Q07820 350 aa7.46□□□□□ -1.22
SCN1A-213ENST00000636759 POSTNQ15063 836 aa7.46□□□□□ -1.22
SCN1A-213ENST00000636759 KRT71Q3SY84 523 aa7.46□□□□□ -1.22
SCN1A-213ENST00000636759 HAUS3Q68CZ6 603 aa7.46□□□□□ -1.22
SCN1A-213ENST00000636759 GRAMD4Q6IC98 578 aa7.46□□□□□ -1.22
SCN1A-213ENST00000636759 METTL16Q86W50 562 aaKnown RBP7.46□□□□□ -1.22
SCN1A-213ENST00000636759 TTC5Q8N0Z6 440 aa7.46□□□□□ -1.22
SCN1A-213ENST00000636759 MREGQ8N565 214 aa7.46□□□□□ -1.22
SCN1A-213ENST00000636759 PLBD2Q8NHP8 589 aa7.46□□□□□ -1.22
SCN1A-213ENST00000636759 KRT23Q9C075 422 aa7.46□□□□□ -1.22
SCN1A-213ENST00000636759 TAOK3Q9H2K8 898 aa7.46□□□□□ -1.22
SCN1A-213ENST00000636759 BOLA2Q9H3K6 86 aa7.46□□□□□ -1.22
SCN1A-213ENST00000636759 NCOA5Q9HCD5 579 aaKnown RBP7.46□□□□□ -1.22
SCN1A-213ENST00000636759 TUBA8Q9NY65 449 aaPredicted RBP7.46□□□□□ -1.22
SCN1A-213ENST00000636759 SNX12Q9UMY4 172 aa7.46□□□□□ -1.22
SCN1A-213ENST00000636759 HYOU1Q9Y4L1 999 aa7.46□□□□□ -1.22
SCN1A-213ENST00000636759 ZNF831Q5JPB2 1677 aa7.46□□□□□ -1.22
SCN1A-213ENST00000636759 RIC1Q4ADV7 1423 aa7.46□□□□□ -1.22
SCN1A-213ENST00000636759 ESYT3A0FGR9 886 aa7.46□□□□□ -1.22
SCN1A-213ENST00000636759 A8MUI8 341 aa7.46□□□□□ -1.22
SCN1A-213ENST00000636759 CPLX1O14810 134 aa7.46□□□□□ -1.22
SCN1A-213ENST00000636759 PAEPP09466 180 aa7.46□□□□□ -1.22
SCN1A-213ENST00000636759 CALB2P22676 271 aa7.46□□□□□ -1.22
SCN1A-213ENST00000636759 CACNA2D1P54289 1103 aa7.46□□□□□ -1.22
SCN1A-213ENST00000636759 MAGOHP61326 146 aaKnown RBP7.46□□□□□ -1.22
SCN1A-213ENST00000636759 NEXNQ0ZGT2 675 aa7.46□□□□□ -1.22
SCN1A-213ENST00000636759 RCN2Q14257 317 aa7.46□□□□□ -1.22
SCN1A-213ENST00000636759 SLC39A14Q15043 492 aa7.46□□□□□ -1.22
SCN1A-213ENST00000636759 SPA17Q15506 151 aa7.46□□□□□ -1.22
SCN1A-213ENST00000636759 SLC9C2Q5TAH2 1124 aa7.46□□□□□ -1.22
SCN1A-213ENST00000636759 SPATA1Q5VX52 437 aa7.46□□□□□ -1.22
SCN1A-213ENST00000636759 TOM1L2Q6ZVM7 507 aa7.46□□□□□ -1.22
SCN1A-213ENST00000636759 EXOC8Q8IYI6 725 aa7.46□□□□□ -1.22
SCN1A-213ENST00000636759 TRIML1Q8N9V2 468 aa7.46□□□□□ -1.22
SCN1A-213ENST00000636759 MAGOHBQ96A72 148 aaKnown RBP7.46□□□□□ -1.22
SCN1A-213ENST00000636759 TRIM11Q96F44 468 aa7.46□□□□□ -1.22
SCN1A-213ENST00000636759 PSMB7Q99436 277 aa7.46□□□□□ -1.22
SCN1A-213ENST00000636759 SELENOSQ9BQE4 189 aa7.46□□□□□ -1.22
SCN1A-213ENST00000636759 ADD3Q9UEY8 706 aaKnown RBP7.46□□□□□ -1.22
SCN1A-213ENST00000636759 KRT16P08779 473 aa7.45□□□□□ -1.22
SCN1A-213ENST00000636759 FAM153BP0C7A2 387 aa7.45□□□□□ -1.22
SCN1A-213ENST00000636759 MYL6BP14649 208 aa7.45□□□□□ -1.22
SCN1A-213ENST00000636759 XBP1P17861 261 aa7.45□□□□□ -1.22
SCN1A-213ENST00000636759 PIP4K2AP48426 406 aaPredicted RBP7.45□□□□□ -1.22
SCN1A-213ENST00000636759 TFCP2Q12800 502 aa7.45□□□□□ -1.22
SCN1A-213ENST00000636759 FAM153CQ494X1 144 aa7.45□□□□□ -1.22
SCN1A-213ENST00000636759 RIC3Q7Z5B4 369 aa7.45□□□□□ -1.22
SCN1A-213ENST00000636759 ZNF554Q86TJ5 538 aa7.45□□□□□ -1.22
SCN1A-213ENST00000636759 MAP7D3Q8IWC1 876 aa7.45□□□□□ -1.22
SCN1A-213ENST00000636759 STK11IPQ8N1F8 1099 aa7.45□□□□□ -1.22
SCN1A-213ENST00000636759 CHP1Q99653 195 aa7.45□□□□□ -1.22
SCN1A-213ENST00000636759 DDX23Q9BUQ8 820 aaKnown RBP7.45□□□□□ -1.22
SCN1A-213ENST00000636759 RNPEPL1Q9HAU8 725 aa7.45□□□□□ -1.22
SCN1A-213ENST00000636759 TBC1D7Q9P0N9 293 aa7.45□□□□□ -1.22
SCN1A-213ENST00000636759 FAM153AQ9UHL3 310 aa7.45□□□□□ -1.22
SCN1A-213ENST00000636759 HPS5Q9UPZ3 1129 aa7.45□□□□□ -1.22
SCN1A-213ENST00000636759 LRCH1Q9Y2L9 728 aa7.45□□□□□ -1.22
SCN1A-213ENST00000636759 MROH7-TTC4A0A0A0MT08 1334 aa7.45□□□□□ -1.22
SCN1A-213ENST00000636759 ITIH6Q6UXX5 1313 aa7.45□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms