RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 UBIAD1Q9Y5Z9 338 aa20.58■□□□□ 0.89
CLN3-239ENST00000628023 ELP1O95163 1332 aa20.57■□□□□ 0.88
CLN3-239ENST00000628023 SPATA31C2B4DYI2 1134 aa20.57■□□□□ 0.88
CLN3-239ENST00000628023 SORBS3O60504 671 aa20.57■□□□□ 0.88
CLN3-239ENST00000628023 ITGB5P18084 799 aa20.57■□□□□ 0.88
CLN3-239ENST00000628023 UBA1P22314 1058 aaKnown RBP20.57■□□□□ 0.88
CLN3-239ENST00000628023 GNL2Q13823 731 aaKnown RBP20.57■□□□□ 0.88
CLN3-239ENST00000628023 ANKRD33Q7Z3H0 272 aa20.57■□□□□ 0.88
CLN3-239ENST00000628023 DHX37Q8IY37 1157 aaKnown RBP20.57■□□□□ 0.88
CLN3-239ENST00000628023 DIS3L2Q8IYB7 885 aaKnown RBP20.57■□□□□ 0.88
CLN3-239ENST00000628023 MLXIPQ9HAP2 919 aa20.57■□□□□ 0.88
CLN3-239ENST00000628023 JADE2Q9NQC1 790 aa20.57■□□□□ 0.88
CLN3-239ENST00000628023 PKD2L1Q9P0L9 805 aa20.57■□□□□ 0.88
CLN3-239ENST00000628023 COL6A3P12111 3177 aa20.56■□□□□ 0.88
CLN3-239ENST00000628023 M0R2N6 131 aa20.56■□□□□ 0.88
CLN3-239ENST00000628023 GGPS1O95749 300 aa20.56■□□□□ 0.88
CLN3-239ENST00000628023 CYP3A4P08684 503 aa20.56■□□□□ 0.88
CLN3-239ENST00000628023 IRX5P78411 483 aaPredicted RBP20.56■□□□□ 0.88
CLN3-239ENST00000628023 FPGSQ05932 587 aa20.56■□□□□ 0.88
CLN3-239ENST00000628023 CUL4AQ13619 759 aa20.56■□□□□ 0.88
CLN3-239ENST00000628023 NEDD9Q14511 834 aa20.56■□□□□ 0.88
CLN3-239ENST00000628023 C9orf50Q5SZB4 431 aa20.56■□□□□ 0.88
CLN3-239ENST00000628023 CCSAPQ6IQ19 270 aaPredicted RBP20.56■□□□□ 0.88
CLN3-239ENST00000628023 PIK3AP1Q6ZUJ8 805 aa20.56■□□□□ 0.88
CLN3-239ENST00000628023 MYH7BA7E2Y1 1941 aa20.55■□□□□ 0.88
CLN3-239ENST00000628023 ASGR1P07306 291 aa20.55■□□□□ 0.88
CLN3-239ENST00000628023 SMAD3P84022 425 aaKnown RBP20.55■□□□□ 0.88
CLN3-239ENST00000628023 SETQ01105 290 aaPredicted RBP20.55■□□□□ 0.88
CLN3-239ENST00000628023 ARHGAP1Q07960 439 aa20.55■□□□□ 0.88
CLN3-239ENST00000628023 FAAP100Q0VG06 881 aa20.55■□□□□ 0.88
CLN3-239ENST00000628023 SEMA3FQ13275 785 aa20.55■□□□□ 0.88
CLN3-239ENST00000628023 NR5A1Q13285 461 aa20.55■□□□□ 0.88
CLN3-239ENST00000628023 LAMC2Q13753 1193 aa20.55■□□□□ 0.88
CLN3-239ENST00000628023 INF2Q27J81 1249 aa20.55■□□□□ 0.88
CLN3-239ENST00000628023 CELF3Q5SZQ8 465 aaKnown RBP20.55■□□□□ 0.88
CLN3-239ENST00000628023 PLA2G4DQ86XP0 818 aa20.55■□□□□ 0.88
CLN3-239ENST00000628023 GIMAP8Q8ND71 665 aaPredicted RBP20.55■□□□□ 0.88
CLN3-239ENST00000628023 FBXO18Q8NFZ0 1043 aa20.55■□□□□ 0.88
CLN3-239ENST00000628023 CYP2W1Q8TAV3 490 aa20.55■□□□□ 0.88
CLN3-239ENST00000628023 AFG1LQ8WV93 481 aa20.55■□□□□ 0.88
CLN3-239ENST00000628023 BTBD18B2RXH4 712 aa20.54■□□□□ 0.88
CLN3-239ENST00000628023 H3BQV1 296 aa20.54■□□□□ 0.88
CLN3-239ENST00000628023 DLL1O00548 723 aa20.54■□□□□ 0.88
CLN3-239ENST00000628023 NOP56O00567 594 aaKnown RBP20.54■□□□□ 0.88
CLN3-239ENST00000628023 MAFGO15525 162 aa20.54■□□□□ 0.88
CLN3-239ENST00000628023 HSP90AA1P07900 732 aaKnown RBP20.54■□□□□ 0.88
CLN3-239ENST00000628023 MYL3P08590 195 aa20.54■□□□□ 0.88
CLN3-239ENST00000628023 USP11P51784 963 aa20.54■□□□□ 0.88
CLN3-239ENST00000628023 NKX3-2P78367 333 aa20.54■□□□□ 0.88
CLN3-239ENST00000628023 SP2Q02086 613 aa20.54■□□□□ 0.88
CLN3-239ENST00000628023 PRR16Q569H4 304 aa20.54■□□□□ 0.88
CLN3-239ENST00000628023 NIPA1Q7RTP0 329 aa20.54■□□□□ 0.88
CLN3-239ENST00000628023 CRYGNQ8WXF5 182 aa20.54■□□□□ 0.88
CLN3-239ENST00000628023 RNPC3Q96LT9 517 aaKnown RBP20.54■□□□□ 0.88
CLN3-239ENST00000628023 FAM161BQ96MY7 647 aa20.54■□□□□ 0.88
CLN3-239ENST00000628023 SPATA33Q96N06 139 aa20.54■□□□□ 0.88
CLN3-239ENST00000628023 KCNH7Q9NS40 1196 aa20.54■□□□□ 0.88
CLN3-239ENST00000628023 A0A0U1RQG5 324 aaPredicted RBP20.53■□□□□ 0.88
CLN3-239ENST00000628023 FAM86B1E9PN63 330 aa20.53■□□□□ 0.88
CLN3-239ENST00000628023 CTAGE5O15320 804 aa20.53■□□□□ 0.88
CLN3-239ENST00000628023 TLR3O15455 904 aaKnown RBP20.53■□□□□ 0.88
CLN3-239ENST00000628023 FAM86B2P0C5J1 330 aa20.53■□□□□ 0.88
CLN3-239ENST00000628023 SP4Q02446 784 aa20.53■□□□□ 0.88
CLN3-239ENST00000628023 MYSM1Q5VVJ2 828 aa20.53■□□□□ 0.88
CLN3-239ENST00000628023 METTL7BQ6UX53 244 aa20.53■□□□□ 0.88
CLN3-239ENST00000628023 CYFIP1Q7L576 1253 aa20.53■□□□□ 0.88
CLN3-239ENST00000628023 NEK8Q86SG6 692 aa20.53■□□□□ 0.88
CLN3-239ENST00000628023 EMID1Q96A84 441 aaPredicted RBP20.53■□□□□ 0.88
CLN3-239ENST00000628023 SENP7Q9BQF6 1050 aa20.53■□□□□ 0.88
CLN3-239ENST00000628023 SDF4Q9BRK5 362 aa20.53■□□□□ 0.88
CLN3-239ENST00000628023 FOXD4L1Q9NU39 408 aa20.53■□□□□ 0.88
CLN3-239ENST00000628023 POLR3EQ9NVU0 708 aa20.53■□□□□ 0.88
CLN3-239ENST00000628023 MEIS1O00470 390 aa20.52■□□□□ 0.88
CLN3-239ENST00000628023 TIMP1P01033 207 aa20.52■□□□□ 0.88
CLN3-239ENST00000628023 MMP3P08254 477 aa20.52■□□□□ 0.88
CLN3-239ENST00000628023 ARP10275 920 aa20.52■□□□□ 0.88
CLN3-239ENST00000628023 KCNA2P16389 499 aa20.52■□□□□ 0.88
CLN3-239ENST00000628023 ITGB8P26012 769 aa20.52■□□□□ 0.88
CLN3-239ENST00000628023 CIITAP33076 1130 aa20.52■□□□□ 0.88
CLN3-239ENST00000628023 LETM2Q2VYF4 491 aa20.52■□□□□ 0.88
CLN3-239ENST00000628023 CXCL17Q6UXB2 119 aa20.52■□□□□ 0.88
CLN3-239ENST00000628023 PPTC7Q8NI37 304 aa20.52■□□□□ 0.88
CLN3-239ENST00000628023 AGO4Q9HCK5 861 aaKnown RBP20.52■□□□□ 0.88
CLN3-239ENST00000628023 LAMA2P24043 3122 aaKnown RBP20.51■□□□□ 0.87
CLN3-239ENST00000628023 A6NJR5 290 aa20.51■□□□□ 0.87
CLN3-239ENST00000628023 ARVCFO00192 962 aa20.51■□□□□ 0.87
CLN3-239ENST00000628023 CABYRO75952 493 aa20.51■□□□□ 0.87
CLN3-239ENST00000628023 CDK7P50613 346 aa20.51■□□□□ 0.87
CLN3-239ENST00000628023 DGKDQ16760 1214 aa20.51■□□□□ 0.87
CLN3-239ENST00000628023 MCTP1Q6DN14 999 aa20.51■□□□□ 0.87
CLN3-239ENST00000628023 TNFRSF25Q93038 417 aa20.51■□□□□ 0.87
CLN3-239ENST00000628023 INTS4Q96HW7 963 aaKnown RBP20.51■□□□□ 0.87
CLN3-239ENST00000628023 GUCD1Q96NT3 240 aa20.51■□□□□ 0.87
CLN3-239ENST00000628023 ZNF577Q9BSK1 485 aa20.51■□□□□ 0.87
CLN3-239ENST00000628023 TCEAL9Q9UHQ7 104 aa20.51■□□□□ 0.87
CLN3-239ENST00000628023 IGLV3-22A0A075B6J6 115 aa20.5■□□□□ 0.87
CLN3-239ENST00000628023 FAM205CA6NFA0 338 aa20.5■□□□□ 0.87
CLN3-239ENST00000628023 KPNA6O60684 536 aa20.5■□□□□ 0.87
CLN3-239ENST00000628023 ATP9AO75110 1047 aa20.5■□□□□ 0.87
CLN3-239ENST00000628023 TDP2O95551 362 aa20.5■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms