RNA–Protein interactions for RNA: ENST00000621814.4

CCDC88A-214, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5 BASIC

Gene CCDC88A, Length 3,089 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-214ENST00000621814 FAM83BQ5T0W9 1011 aa14.28□□□□□ -0.12
CCDC88A-214ENST00000621814 FAM133AQ8N9E0 248 aa14.28□□□□□ -0.12
CCDC88A-214ENST00000621814 ZNF622Q969S3 477 aaKnown RBP eCLIP14.28□□□□□ -0.122e-6■■□□□ 11.5
CCDC88A-214ENST00000621814 TEKT1Q969V4 418 aa14.28□□□□□ -0.12
CCDC88A-214ENST00000621814 MTMR8Q96EF0 704 aa14.28□□□□□ -0.12
CCDC88A-214ENST00000621814 OSBPL9Q96SU4 736 aa14.28□□□□□ -0.12
CCDC88A-214ENST00000621814 RABEP2Q9H5N1 569 aa14.28□□□□□ -0.12
CCDC88A-214ENST00000621814 MAST2Q6P0Q8 1798 aa14.28□□□□□ -0.12
CCDC88A-214ENST00000621814 FTCDO95954 541 aa14.28□□□□□ -0.12
CCDC88A-214ENST00000621814 HOXA13P31271 388 aaPredicted RBP14.28□□□□□ -0.12
CCDC88A-214ENST00000621814 SEMA3FQ13275 785 aa14.28□□□□□ -0.12
CCDC88A-214ENST00000621814 TMEM119Q4V9L6 283 aa14.28□□□□□ -0.12
CCDC88A-214ENST00000621814 FIGNQ5HY92 759 aa14.28□□□□□ -0.12
CCDC88A-214ENST00000621814 PPP4R3AQ6IN85 833 aa14.28□□□□□ -0.12
CCDC88A-214ENST00000621814 SND1Q7KZF4 910 aaKnown RBP eCLIP14.28□□□□□ -0.12
CCDC88A-214ENST00000621814 SPICE1Q8N0Z3 855 aa14.28□□□□□ -0.12
CCDC88A-214ENST00000621814 BAP1Q92560 729 aa14.28□□□□□ -0.12
CCDC88A-214ENST00000621814 TBC1D5Q92609 795 aa14.28□□□□□ -0.12
CCDC88A-214ENST00000621814 SELENOOQ9BVL4 669 aa14.28□□□□□ -0.12
CCDC88A-214ENST00000621814 LRRC27Q9C0I9 530 aa14.28□□□□□ -0.12
CCDC88A-214ENST00000621814 COA1Q9GZY4 146 aa14.28□□□□□ -0.12
CCDC88A-214ENST00000621814 EMILIN3Q9NT22 766 aa14.28□□□□□ -0.12
CCDC88A-214ENST00000621814 PODXL2Q9NZ53 605 aa14.28□□□□□ -0.12
CCDC88A-214ENST00000621814 ADAMTS1Q9UHI8 967 aa14.28□□□□□ -0.12
CCDC88A-214ENST00000621814 hCG_1984214I3L0E3 225 aa14.28□□□□□ -0.12
CCDC88A-214ENST00000621814 POLRMTO00411 1230 aaKnown RBP14.28□□□□□ -0.12
CCDC88A-214ENST00000621814 MED24O75448 989 aa14.28□□□□□ -0.12
CCDC88A-214ENST00000621814 ACTN1P12814 892 aa14.28□□□□□ -0.12
CCDC88A-214ENST00000621814 CDC37Q16543 378 aaPredicted RBP14.28□□□□□ -0.12
CCDC88A-214ENST00000621814 SFMBT2Q5VUG0 894 aa14.28□□□□□ -0.12
CCDC88A-214ENST00000621814 SLFN13Q68D06 897 aa14.28□□□□□ -0.12
CCDC88A-214ENST00000621814 PDXDC1Q6P996 788 aa14.28□□□□□ -0.12
CCDC88A-214ENST00000621814 CCDC65Q8IXS2 484 aa14.28□□□□□ -0.12
CCDC88A-214ENST00000621814 ZNF713Q8N859 430 aaPredicted RBP14.28□□□□□ -0.12
CCDC88A-214ENST00000621814 BCAS3Q9H6U6 928 aa14.28□□□□□ -0.12
CCDC88A-214ENST00000621814 SFI1A8K8P3 1242 aa14.27□□□□□ -0.12
CCDC88A-214ENST00000621814 SEPT2Q15019 361 aa14.27□□□□□ -0.12
CCDC88A-214ENST00000621814 SLC9C1Q4G0N8 1177 aa14.27□□□□□ -0.12
CCDC88A-214ENST00000621814 GPATCH4Q5T3I0 446 aaKnown RBP14.27□□□□□ -0.12
CCDC88A-214ENST00000621814 TCERG1LQ5VWI1 586 aa14.27□□□□□ -0.12
CCDC88A-214ENST00000621814 FOXR1Q6PIV2 292 aa14.27□□□□□ -0.12
CCDC88A-214ENST00000621814 SPATA4Q8NEY3 305 aa14.27□□□□□ -0.12
CCDC88A-214ENST00000621814 ANO3Q9BYT9 981 aa14.27□□□□□ -0.12
CCDC88A-214ENST00000621814 TMX4Q9H1E5 349 aaPredicted RBP14.27□□□□□ -0.12
CCDC88A-214ENST00000621814 HPCAL4Q9UM19 191 aa14.27□□□□□ -0.12
CCDC88A-214ENST00000621814 ANO9A1A5B4 782 aa14.27□□□□□ -0.13
CCDC88A-214ENST00000621814 DDTLA6NHG4 134 aaPredicted RBP14.27□□□□□ -0.13
CCDC88A-214ENST00000621814 TUBBP07437 444 aa14.27□□□□□ -0.13
CCDC88A-214ENST00000621814 CASP5P51878 434 aa14.27□□□□□ -0.13
CCDC88A-214ENST00000621814 CERKLQ49MI3 558 aaPredicted RBP14.27□□□□□ -0.13
CCDC88A-214ENST00000621814 DCAF17Q5H9S7 520 aaPredicted RBP14.27□□□□□ -0.13
CCDC88A-214ENST00000621814 MSL1Q68DK7 614 aa14.27□□□□□ -0.13
CCDC88A-214ENST00000621814 IQCEQ6IPM2 695 aa14.27□□□□□ -0.13
CCDC88A-214ENST00000621814 APOBEC3HQ6NTF7 200 aaKnown RBP14.27□□□□□ -0.13
CCDC88A-214ENST00000621814 CCNI2Q6ZMN8 369 aaPredicted RBP14.27□□□□□ -0.13
CCDC88A-214ENST00000621814 SP8Q8IXZ3 490 aa14.27□□□□□ -0.13
CCDC88A-214ENST00000621814 FAM71BQ8TC56 605 aa14.27□□□□□ -0.13
CCDC88A-214ENST00000621814 PURBQ96QR8 312 aaKnown RBP14.27□□□□□ -0.13
CCDC88A-214ENST00000621814 IGKV6D-41A0A0C4DH26 115 aa14.26□□□□□ -0.13
CCDC88A-214ENST00000621814 ANKRD65E5RJM6 399 aa14.26□□□□□ -0.13
CCDC88A-214ENST00000621814 PSMD2Q13200 908 aa14.26□□□□□ -0.13
CCDC88A-214ENST00000621814 DNAJC21Q5F1R6 531 aaKnown RBP14.26□□□□□ -0.13
CCDC88A-214ENST00000621814 SCFD1Q8WVM8 642 aa14.26□□□□□ -0.13
CCDC88A-214ENST00000621814 PACSIN1Q9BY11 444 aa14.26□□□□□ -0.13
CCDC88A-214ENST00000621814 SBF2Q86WG5 1849 aa14.26□□□□□ -0.13
CCDC88A-214ENST00000621814 SYF2O95926 243 aaKnown RBP14.26□□□□□ -0.13
CCDC88A-214ENST00000621814 ADRA2BP18089 450 aa14.26□□□□□ -0.13
CCDC88A-214ENST00000621814 MCM3P25205 808 aa14.26□□□□□ -0.13
CCDC88A-214ENST00000621814 PAFAH1B1P43034 410 aa14.26□□□□□ -0.13
CCDC88A-214ENST00000621814 CRKP46108 304 aa14.26□□□□□ -0.13
CCDC88A-214ENST00000621814 NOVP48745 357 aa14.26□□□□□ -0.13
CCDC88A-214ENST00000621814 CLK2P49760 499 aaKnown RBP14.26□□□□□ -0.13
CCDC88A-214ENST00000621814 CDK17Q00537 523 aa14.26□□□□□ -0.13
CCDC88A-214ENST00000621814 PPARDQ03181 441 aa14.26□□□□□ -0.13
CCDC88A-214ENST00000621814 ORC2Q13416 577 aaPredicted RBP14.26□□□□□ -0.13
CCDC88A-214ENST00000621814 NOX5Q96PH1 765 aa14.26□□□□□ -0.13
CCDC88A-214ENST00000621814 NT5C3AQ9H0P0 336 aa14.26□□□□□ -0.13
CCDC88A-214ENST00000621814 SWAP70Q9UH65 585 aa14.26□□□□□ -0.13
CCDC88A-214ENST00000621814 ATP6V0A2Q9Y487 856 aa14.26□□□□□ -0.13
CCDC88A-214ENST00000621814 ESYT3A0FGR9 886 aa14.26□□□□□ -0.13
CCDC88A-214ENST00000621814 TLR2O60603 784 aa14.26□□□□□ -0.13
CCDC88A-214ENST00000621814 PALMO75781 387 aa14.26□□□□□ -0.13
CCDC88A-214ENST00000621814 PRPF6O94906 941 aaKnown RBP14.26□□□□□ -0.13
CCDC88A-214ENST00000621814 NR2F2P24468 414 aa14.26□□□□□ -0.13
CCDC88A-214ENST00000621814 ACTN2P35609 894 aa14.26□□□□□ -0.13
CCDC88A-214ENST00000621814 MAPK8IP2Q13387 824 aaPredicted RBP14.26□□□□□ -0.13
CCDC88A-214ENST00000621814 CYP2W1Q8TAV3 490 aa14.26□□□□□ -0.13
CCDC88A-214ENST00000621814 IFT81Q8WYA0 676 aa14.26□□□□□ -0.13
CCDC88A-214ENST00000621814 RPGRIP1Q96KN7 1286 aa14.26□□□□□ -0.13
CCDC88A-214ENST00000621814 CRAMP1Q96RY5 1269 aa14.26□□□□□ -0.13
CCDC88A-214ENST00000621814 GOLPH3Q9H4A6 298 aa14.26□□□□□ -0.13
CCDC88A-214ENST00000621814 DNAJC18Q9H819 358 aa14.26□□□□□ -0.13
CCDC88A-214ENST00000621814 NOL4O94818 638 aa14.25□□□□□ -0.13
CCDC88A-214ENST00000621814 CYP11B2P19099 503 aa14.25□□□□□ -0.13
CCDC88A-214ENST00000621814 ZNF76P36508 570 aa14.25□□□□□ -0.13
CCDC88A-214ENST00000621814 EHHADHQ08426 723 aa14.25□□□□□ -0.13
CCDC88A-214ENST00000621814 KLHL30Q0D2K2 578 aa14.25□□□□□ -0.13
CCDC88A-214ENST00000621814 KIAA0753Q2KHM9 967 aa14.25□□□□□ -0.13
CCDC88A-214ENST00000621814 HGSNATQ68CP4 663 aa14.25□□□□□ -0.13
CCDC88A-214ENST00000621814 TTC19Q6DKK2 380 aaPredicted RBP14.25□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms