RNA–Protein interactions for RNA: ENST00000619445.1

UPF3B-204, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5 BASIC

Gene UPF3B, Length 1,385 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-204ENST00000619445 LGALS2P05162 132 aa13.71□□□□□ -0.21
UPF3B-204ENST00000619445 HOXC8P31273 242 aa13.71□□□□□ -0.21
UPF3B-204ENST00000619445 SP2Q02086 613 aa13.71□□□□□ -0.21
UPF3B-204ENST00000619445 TAP1Q03518 808 aa13.71□□□□□ -0.21
UPF3B-204ENST00000619445 TRIM71Q2Q1W2 868 aaKnown RBP13.71□□□□□ -0.21
UPF3B-204ENST00000619445 PPP1R13LQ8WUF5 828 aa13.71□□□□□ -0.21
UPF3B-204ENST00000619445 ATP6V0A1Q93050 837 aa13.71□□□□□ -0.21
UPF3B-204ENST00000619445 GPRASP2Q96D09 838 aa13.71□□□□□ -0.21
UPF3B-204ENST00000619445 RAD9AQ99638 391 aa13.71□□□□□ -0.21
UPF3B-204ENST00000619445 ESYT1Q9BSJ8 1104 aa13.71□□□□□ -0.21
UPF3B-204ENST00000619445 COG5Q9UP83 839 aa13.71□□□□□ -0.21
UPF3B-204ENST00000619445 RSPH10B2B2RC85 870 aa13.71□□□□□ -0.22
UPF3B-204ENST00000619445 TNFRSF10AO00220 468 aa13.71□□□□□ -0.22
UPF3B-204ENST00000619445 SH2B2O14492 632 aaPredicted RBP13.71□□□□□ -0.22
UPF3B-204ENST00000619445 NBNO60934 754 aa13.71□□□□□ -0.22
UPF3B-204ENST00000619445 GJB5O95377 273 aa13.71□□□□□ -0.22
UPF3B-204ENST00000619445 RPLP2P05387 115 aaKnown RBP13.71□□□□□ -0.22
UPF3B-204ENST00000619445 RSPH10BP0C881 870 aa13.71□□□□□ -0.22
UPF3B-204ENST00000619445 THPOP40225 353 aa13.71□□□□□ -0.22
UPF3B-204ENST00000619445 MRPS9P82933 396 aaKnown RBP13.71□□□□□ -0.22
UPF3B-204ENST00000619445 CCDC85BQ15834 202 aaPredicted RBP13.71□□□□□ -0.22
UPF3B-204ENST00000619445 ZNF618Q5T7W0 954 aa13.71□□□□□ -0.22
UPF3B-204ENST00000619445 LSG1Q9H089 658 aaKnown RBP13.71□□□□□ -0.22
UPF3B-204ENST00000619445 PSTPIP2Q9H939 334 aa13.71□□□□□ -0.22
UPF3B-204ENST00000619445 TAF6LQ9Y6J9 622 aa13.71□□□□□ -0.22
UPF3B-204ENST00000619445 SPDYE3A6NKU9 549 aa13.7□□□□□ -0.22
UPF3B-204ENST00000619445 MEIS2O14770 477 aa13.7□□□□□ -0.22
UPF3B-204ENST00000619445 SLC27A2O14975 620 aa13.7□□□□□ -0.22
UPF3B-204ENST00000619445 AMHP03971 560 aa13.7□□□□□ -0.22
UPF3B-204ENST00000619445 SMIM10L2AP0DMW4 78 aa13.7□□□□□ -0.22
UPF3B-204ENST00000619445 SMIM10L2BP0DMW5 78 aa13.7□□□□□ -0.22
UPF3B-204ENST00000619445 GPNMBQ14956 572 aa13.7□□□□□ -0.22
UPF3B-204ENST00000619445 BMP2KLQ5H9B9 411 aa13.7□□□□□ -0.22
UPF3B-204ENST00000619445 CREB3L3Q68CJ9 461 aa13.7□□□□□ -0.22
UPF3B-204ENST00000619445 CYFIP1Q7L576 1253 aa13.7□□□□□ -0.22
UPF3B-204ENST00000619445 SGMS1Q86VZ5 419 aa13.7□□□□□ -0.22
UPF3B-204ENST00000619445 PIBF1Q8WXW3 757 aa13.7□□□□□ -0.22
UPF3B-204ENST00000619445 ARNTL2Q8WYA1 636 aa13.7□□□□□ -0.22
UPF3B-204ENST00000619445 TNPO1Q92973 898 aaKnown RBP13.7□□□□□ -0.22
UPF3B-204ENST00000619445 GPR20Q99678 358 aa13.7□□□□□ -0.22
UPF3B-204ENST00000619445 GLT8D2Q9H1C3 349 aa13.7□□□□□ -0.22
UPF3B-204ENST00000619445 ANO2Q9NQ90 1003 aa13.7□□□□□ -0.22
UPF3B-204ENST00000619445 RBM28Q9NW13 759 aaKnown RBP13.7□□□□□ -0.22
UPF3B-204ENST00000619445 INSL6Q9Y581 213 aa13.7□□□□□ -0.22
UPF3B-204ENST00000619445 MTCH2Q9Y6C9 303 aa13.7□□□□□ -0.22
UPF3B-204ENST00000619445 MICAL3Q7RTP6 2002 aa13.69□□□□□ -0.22
UPF3B-204ENST00000619445 SPTBN5Q9NRC6 3674 aaKnown RBP13.69□□□□□ -0.22
UPF3B-204ENST00000619445 NRCAMQ92823 1304 aa13.69□□□□□ -0.22
UPF3B-204ENST00000619445 hCG_1984214I3L0E3 225 aa13.69□□□□□ -0.22
UPF3B-204ENST00000619445 IRX6P78412 446 aaPredicted RBP13.69□□□□□ -0.22
UPF3B-204ENST00000619445 NECTIN1Q15223 517 aa13.69□□□□□ -0.22
UPF3B-204ENST00000619445 SKIV2LQ15477 1246 aaKnown RBP13.69□□□□□ -0.22
UPF3B-204ENST00000619445 TRAF7Q6Q0C0 670 aa13.69□□□□□ -0.22
UPF3B-204ENST00000619445 USP17L6PQ6QN14 398 aa13.69□□□□□ -0.22
UPF3B-204ENST00000619445 MICALL1Q8N3F8 863 aa13.69□□□□□ -0.22
UPF3B-204ENST00000619445 SRBD1Q8N5C6 995 aaKnown RBP13.69□□□□□ -0.22
UPF3B-204ENST00000619445 ZNF713Q8N859 430 aaPredicted RBP13.69□□□□□ -0.22
UPF3B-204ENST00000619445 FANCBQ8NB91 859 aa13.69□□□□□ -0.22
UPF3B-204ENST00000619445 SEPT8Q92599 483 aa13.69□□□□□ -0.22
UPF3B-204ENST00000619445 APBB2Q92870 758 aa13.69□□□□□ -0.22
UPF3B-204ENST00000619445 TGS1Q96RS0 853 aaKnown RBP13.69□□□□□ -0.22
UPF3B-204ENST00000619445 MYL10Q9BUA6 226 aa13.69□□□□□ -0.22
UPF3B-204ENST00000619445 RNPEPQ9H4A4 650 aa13.69□□□□□ -0.22
UPF3B-204ENST00000619445 PRDM6Q9NQX0 595 aa13.69□□□□□ -0.22
UPF3B-204ENST00000619445 RTEL1Q9NZ71 1219 aa13.69□□□□□ -0.22
UPF3B-204ENST00000619445 PTPRSQ13332 1948 aa13.68□□□□□ -0.22
UPF3B-204ENST00000619445 ZNF200P98182 395 aaPredicted RBP13.68□□□□□ -0.22
UPF3B-204ENST00000619445 KRT32Q14532 448 aa13.68□□□□□ -0.22
UPF3B-204ENST00000619445 PLEKHG4Q58EX7 1191 aa13.68□□□□□ -0.22
UPF3B-204ENST00000619445 PPP1R18Q6NYC8 613 aa13.68□□□□□ -0.22
UPF3B-204ENST00000619445 TAF2Q6P1X5 1199 aa13.68□□□□□ -0.22
UPF3B-204ENST00000619445 TMTC3Q6ZXV5 915 aa13.68□□□□□ -0.22
UPF3B-204ENST00000619445 CENPQQ7L2Z9 268 aaPredicted RBP13.68□□□□□ -0.22
UPF3B-204ENST00000619445 RSPH3Q86UC2 560 aa13.68□□□□□ -0.22
UPF3B-204ENST00000619445 ADAMTS19Q8TE59 1207 aa13.68□□□□□ -0.22
UPF3B-204ENST00000619445 GPKOWQ92917 476 aaPredicted RBP eCLIP13.68□□□□□ -0.224e-6■□□□□ 8.7
UPF3B-204ENST00000619445 SAMD11Q96NU1 681 aa13.68□□□□□ -0.22
UPF3B-204ENST00000619445 BRWD1Q9NSI6 2320 aa13.67□□□□□ -0.22
UPF3B-204ENST00000619445 DOCK5Q9H7D0 1870 aa13.67□□□□□ -0.22
UPF3B-204ENST00000619445 SORBS3O60504 671 aa13.67□□□□□ -0.22
UPF3B-204ENST00000619445 PLEKHA8P1O95397 391 aa13.67□□□□□ -0.22
UPF3B-204ENST00000619445 FOSP01100 380 aaPredicted RBP13.67□□□□□ -0.22
UPF3B-204ENST00000619445 HMGB1P09429 215 aaKnown RBP13.67□□□□□ -0.22
UPF3B-204ENST00000619445 RCAN1P53805 252 aa13.67□□□□□ -0.22
UPF3B-204ENST00000619445 ERVK-21P61565 698 aa13.67□□□□□ -0.22
UPF3B-204ENST00000619445 DEFB103AP81534 67 aa13.67□□□□□ -0.22
UPF3B-204ENST00000619445 SEMA3FQ13275 785 aa13.67□□□□□ -0.22
UPF3B-204ENST00000619445 FAM43BQ6ZT52 329 aaPredicted RBP13.67□□□□□ -0.22
UPF3B-204ENST00000619445 RPAINQ86UA6 219 aa13.67□□□□□ -0.22
UPF3B-204ENST00000619445 SEPT1Q8WYJ6 367 aa13.67□□□□□ -0.22
UPF3B-204ENST00000619445 UHRF1Q96T88 793 aaPredicted RBP13.67□□□□□ -0.22
UPF3B-204ENST00000619445 CERS4Q9HA82 394 aa13.67□□□□□ -0.22
UPF3B-204ENST00000619445 ERAP1Q9NZ08 941 aa13.67□□□□□ -0.22
UPF3B-204ENST00000619445 SIP14410 1827 aa13.66□□□□□ -0.22
UPF3B-204ENST00000619445 TREHO43280 583 aa13.66□□□□□ -0.22
UPF3B-204ENST00000619445 GRB10Q13322 594 aa13.66□□□□□ -0.22
UPF3B-204ENST00000619445 MTMR1Q13613 665 aa13.66□□□□□ -0.22
UPF3B-204ENST00000619445 MBTPS1Q14703 1052 aa13.66□□□□□ -0.22
UPF3B-204ENST00000619445 TSGA10IPQ3SY00 556 aa13.66□□□□□ -0.22
UPF3B-204ENST00000619445 MICU3Q86XE3 530 aa13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms