RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 CYP3A7P24462 503 aa18.8■□□□□ 0.6
CCDC28A-202ENST00000611852 ATN1P54259 1190 aaPredicted RBP18.8■□□□□ 0.6
CCDC28A-202ENST00000611852 SETQ01105 290 aaPredicted RBP18.8■□□□□ 0.6
CCDC28A-202ENST00000611852 SLC39A5Q6ZMH5 540 aa18.8■□□□□ 0.6
CCDC28A-202ENST00000611852 HSCBQ8IWL3 235 aa18.8■□□□□ 0.6
CCDC28A-202ENST00000611852 INTS4Q96HW7 963 aaKnown RBP18.8■□□□□ 0.6
CCDC28A-202ENST00000611852 STARD7Q9NQZ5 370 aa18.8■□□□□ 0.6
CCDC28A-202ENST00000611852 ELP1O95163 1332 aa18.8■□□□□ 0.6
CCDC28A-202ENST00000611852 KPNA6O60684 536 aa18.79■□□□□ 0.6
CCDC28A-202ENST00000611852 CABYRO75952 493 aa18.79■□□□□ 0.6
CCDC28A-202ENST00000611852 TDP2O95551 362 aa18.79■□□□□ 0.6
CCDC28A-202ENST00000611852 MYL3P08590 195 aa18.79■□□□□ 0.6
CCDC28A-202ENST00000611852 HOXD8P13378 290 aaPredicted RBP18.79■□□□□ 0.6
CCDC28A-202ENST00000611852 ITGB3BPQ13352 177 aaPredicted RBP18.79■□□□□ 0.6
CCDC28A-202ENST00000611852 SNX17Q15036 470 aa18.79■□□□□ 0.6
CCDC28A-202ENST00000611852 LRRC26Q2I0M4 334 aa18.79■□□□□ 0.6
CCDC28A-202ENST00000611852 MOXD1Q6UVY6 613 aa18.79■□□□□ 0.6
CCDC28A-202ENST00000611852 NEK8Q86SG6 692 aa18.79■□□□□ 0.6
CCDC28A-202ENST00000611852 FOXP1Q9H334 677 aaPredicted RBP18.79■□□□□ 0.6
CCDC28A-202ENST00000611852 TELO2Q9Y4R8 837 aa18.79■□□□□ 0.6
CCDC28A-202ENST00000611852 PPFIA4O75335 1185 aa18.79■□□□□ 0.6
CCDC28A-202ENST00000611852 DGKDQ16760 1214 aa18.79■□□□□ 0.6
CCDC28A-202ENST00000611852 LETM2Q2VYF4 491 aa18.79■□□□□ 0.6
CCDC28A-202ENST00000611852 C1orf53Q5VUE5 145 aa18.79■□□□□ 0.6
CCDC28A-202ENST00000611852 MBOAT7Q96N66 472 aa18.79■□□□□ 0.6
CCDC28A-202ENST00000611852 GPR20Q99678 358 aa18.79■□□□□ 0.6
CCDC28A-202ENST00000611852 NFASCO94856 1347 aa18.79■□□□□ 0.6
CCDC28A-202ENST00000611852 ALPK3Q96L96 1907 aa18.78■□□□□ 0.6
CCDC28A-202ENST00000611852 DNAH12Q6ZR08 3092 aa18.78■□□□□ 0.6
CCDC28A-202ENST00000611852 IPO5O00410 1097 aaKnown RBP18.78■□□□□ 0.6
CCDC28A-202ENST00000611852 NOP56O00567 594 aaKnown RBP18.78■□□□□ 0.6
CCDC28A-202ENST00000611852 SP4Q02446 784 aa18.78■□□□□ 0.6
CCDC28A-202ENST00000611852 Q4G0T1 1027 aa18.78■□□□□ 0.6
CCDC28A-202ENST00000611852 PPP4R3AQ6IN85 833 aa18.78■□□□□ 0.6
CCDC28A-202ENST00000611852 VTI1AQ96AJ9 217 aa18.78■□□□□ 0.6
CCDC28A-202ENST00000611852 SDF4Q9BRK5 362 aa18.78■□□□□ 0.6
CCDC28A-202ENST00000611852 ZNF577Q9BSK1 485 aa18.78■□□□□ 0.6
CCDC28A-202ENST00000611852 MTG1Q9BT17 334 aaPredicted RBP18.78■□□□□ 0.6
CCDC28A-202ENST00000611852 JPH1Q9HDC5 661 aaPredicted RBP18.78■□□□□ 0.6
CCDC28A-202ENST00000611852 KIF28PB7ZC32 967 aa18.77■□□□□ 0.6
CCDC28A-202ENST00000611852 DHX15O43143 795 aaKnown RBP18.77■□□□□ 0.6
CCDC28A-202ENST00000611852 PSMC6P62333 389 aa18.77■□□□□ 0.6
CCDC28A-202ENST00000611852 LARP1BQ659C4 914 aaKnown RBP18.77■□□□□ 0.6
CCDC28A-202ENST00000611852 UIMC1Q96RL1 719 aa18.77■□□□□ 0.6
CCDC28A-202ENST00000611852 SLC9A2Q9UBY0 812 aa18.77■□□□□ 0.6
CCDC28A-202ENST00000611852 GRIN2DO15399 1336 aa18.77■□□□□ 0.6
CCDC28A-202ENST00000611852 SCN10AQ9Y5Y9 1956 aa18.77■□□□□ 0.59
CCDC28A-202ENST00000611852 A0A0U1RQG5 324 aaPredicted RBP18.76■□□□□ 0.59
CCDC28A-202ENST00000611852 TNRC18O15417 2968 aaPredicted RBP18.76■□□□□ 0.59
CCDC28A-202ENST00000611852 MSH4O15457 936 aa18.76■□□□□ 0.59
CCDC28A-202ENST00000611852 GCFC2P16383 781 aaKnown RBP18.76■□□□□ 0.59
CCDC28A-202ENST00000611852 U2AF2P26368 475 aaKnown RBP eCLIP18.76■□□□□ 0.59
CCDC28A-202ENST00000611852 GNL2Q13823 731 aaKnown RBP18.76■□□□□ 0.59
CCDC28A-202ENST00000611852 NOSTRINQ8IVI9 506 aa18.76■□□□□ 0.59
CCDC28A-202ENST00000611852 DPF3Q92784 378 aa18.76■□□□□ 0.59
CCDC28A-202ENST00000611852 KAT2BQ92831 832 aa18.76■□□□□ 0.59
CCDC28A-202ENST00000611852 NAP1L4Q99733 375 aaKnown RBP18.76■□□□□ 0.59
CCDC28A-202ENST00000611852 FOXD4L1Q9NU39 408 aa18.76■□□□□ 0.59
CCDC28A-202ENST00000611852 DDX25Q9UHL0 483 aaKnown RBP18.76■□□□□ 0.59
CCDC28A-202ENST00000611852 PDE4DIPQ5VU43 2346 aa18.76■□□□□ 0.59
CCDC28A-202ENST00000611852 H3BQV1 296 aa18.75■□□□□ 0.59
CCDC28A-202ENST00000611852 SLC37A4O43826 429 aa18.75■□□□□ 0.59
CCDC28A-202ENST00000611852 CCNT1O60563 726 aaKnown RBP18.75■□□□□ 0.59
CCDC28A-202ENST00000611852 ZNF286BP0CG31 522 aa18.75■□□□□ 0.59
CCDC28A-202ENST00000611852 RTP1P59025 263 aa18.75■□□□□ 0.59
CCDC28A-202ENST00000611852 ITGA7Q13683 1181 aa18.75■□□□□ 0.59
CCDC28A-202ENST00000611852 TRIM60Q495X7 471 aa18.75■□□□□ 0.59
CCDC28A-202ENST00000611852 SLC43A3Q8NBI5 491 aa18.75■□□□□ 0.59
CCDC28A-202ENST00000611852 SEPT1Q8WYJ6 367 aa18.75■□□□□ 0.59
CCDC28A-202ENST00000611852 C16orf70Q9BSU1 422 aa18.75■□□□□ 0.59
CCDC28A-202ENST00000611852 TBC1D22BQ9NU19 505 aa18.75■□□□□ 0.59
CCDC28A-202ENST00000611852 GSTTP1A0A1W2PQM5 241 aa18.74■□□□□ 0.59
CCDC28A-202ENST00000611852 ARVCFO00192 962 aa18.74■□□□□ 0.59
CCDC28A-202ENST00000611852 EVI5O60447 810 aa18.74■□□□□ 0.59
CCDC28A-202ENST00000611852 F2P00734 622 aa18.74■□□□□ 0.59
CCDC28A-202ENST00000611852 LGALS2P05162 132 aa18.74■□□□□ 0.59
CCDC28A-202ENST00000611852 TCF7P36402 384 aaPredicted RBP18.74■□□□□ 0.59
CCDC28A-202ENST00000611852 CDK7P50613 346 aa18.74■□□□□ 0.59
CCDC28A-202ENST00000611852 ETNPPLQ8TBG4 499 aa18.74■□□□□ 0.59
CCDC28A-202ENST00000611852 SLC5A5Q92911 643 aa18.74■□□□□ 0.59
CCDC28A-202ENST00000611852 ATP11BQ9Y2G3 1177 aa18.74■□□□□ 0.59
CCDC28A-202ENST00000611852 DDX39AO00148 427 aaKnown RBP18.74■□□□□ 0.59
CCDC28A-202ENST00000611852 WNT7AO00755 349 aa18.74■□□□□ 0.59
CCDC28A-202ENST00000611852 CCNE2O96020 404 aa18.74■□□□□ 0.59
CCDC28A-202ENST00000611852 PDCP20941 246 aa18.74■□□□□ 0.59
CCDC28A-202ENST00000611852 ACTR2P61160 394 aa18.74■□□□□ 0.59
CCDC28A-202ENST00000611852 GJA10Q969M2 543 aa18.74■□□□□ 0.59
CCDC28A-202ENST00000611852 RIT2Q99578 217 aa18.74■□□□□ 0.59
CCDC28A-202ENST00000611852 HAS3O00219 553 aa18.73■□□□□ 0.59
CCDC28A-202ENST00000611852 NBPF20Q3BBV1 942 aa18.73■□□□□ 0.59
CCDC28A-202ENST00000611852 MCTP1Q6DN14 999 aa18.73■□□□□ 0.59
CCDC28A-202ENST00000611852 ANKRD33Q7Z3H0 272 aa18.73■□□□□ 0.59
CCDC28A-202ENST00000611852 SEZ6LQ9BYH1 1024 aa18.73■□□□□ 0.59
CCDC28A-202ENST00000611852 KCNMB3Q9NPA1 279 aa18.73■□□□□ 0.59
CCDC28A-202ENST00000611852 GAS7O60861 476 aa18.72■□□□□ 0.59
CCDC28A-202ENST00000611852 PSMD10O75832 226 aa18.72■□□□□ 0.59
CCDC28A-202ENST00000611852 ATG7O95352 703 aa18.72■□□□□ 0.59
CCDC28A-202ENST00000611852 PSEN2P49810 448 aa18.72■□□□□ 0.59
CCDC28A-202ENST00000611852 TLE2Q04725 743 aa18.72■□□□□ 0.59
CCDC28A-202ENST00000611852 UTP14CQ5TAP6 766 aaKnown RBP18.72■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms