RNA–Protein interactions for RNA: ENST00000607187.1

CTSA-215, Transcript of cathepsin A, human

TSL 2

Gene CTSA, Length 509 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CTSA-215	ENST00000607187	PSMC6	P62333	389 aa		11.46	□□□□□ -0.57
CTSA-215	ENST00000607187	TOB2	Q14106	344 aa	Predicted RBP	11.46	□□□□□ -0.57
CTSA-215	ENST00000607187	PCNX4	Q63HM2	1172 aa		11.46	□□□□□ -0.57
CTSA-215	ENST00000607187	ASTL	Q6HA08	431 aa	Predicted RBP	11.46	□□□□□ -0.57
CTSA-215	ENST00000607187	TYW1B	Q6NUM6	668 aa		11.46	□□□□□ -0.57
CTSA-215	ENST00000607187	PPP1R18	Q6NYC8	613 aa		11.46	□□□□□ -0.57
CTSA-215	ENST00000607187	TEX2	Q8IWB9	1127 aa		11.46	□□□□□ -0.57
CTSA-215	ENST00000607187	AFG1L	Q8WV93	481 aa		11.46	□□□□□ -0.57
CTSA-215	ENST00000607187	BAD	Q92934	168 aa		11.46	□□□□□ -0.57
CTSA-215	ENST00000607187	MTG1	Q9BT17	334 aa	Predicted RBP	11.46	□□□□□ -0.57
CTSA-215	ENST00000607187	UPF3B	Q9BZI7	483 aa	Known RBP	11.46	□□□□□ -0.57
CTSA-215	ENST00000607187	UBE2O	Q9C0C9	1292 aa	Known RBP	11.46	□□□□□ -0.57
CTSA-215	ENST00000607187	TMEM39A	Q9NV64	488 aa		11.46	□□□□□ -0.57
CTSA-215	ENST00000607187	BARHL2	Q9NY43	387 aa		11.46	□□□□□ -0.57
CTSA-215	ENST00000607187	TBX21	Q9UL17	535 aa		11.46	□□□□□ -0.57
CTSA-215	ENST00000607187	hCG_1984214	I3L0E3	225 aa		11.45	□□□□□ -0.58
CTSA-215	ENST00000607187	STXBP3	O00186	592 aa		11.45	□□□□□ -0.58
CTSA-215	ENST00000607187	EIF5B	O60841	1220 aa	Known RBP	11.45	□□□□□ -0.58
CTSA-215	ENST00000607187	CD4	P01730	458 aa		11.45	□□□□□ -0.58
CTSA-215	ENST00000607187	MMP3	P08254	477 aa		11.45	□□□□□ -0.58
CTSA-215	ENST00000607187	ICAM3	P32942	547 aa		11.45	□□□□□ -0.58
CTSA-215	ENST00000607187	ANAPC15	P60006	121 aa		11.45	□□□□□ -0.58
CTSA-215	ENST00000607187	SP2	Q02086	613 aa		11.45	□□□□□ -0.58
CTSA-215	ENST00000607187	LAMC2	Q13753	1193 aa		11.45	□□□□□ -0.58
CTSA-215	ENST00000607187	NTRK3	Q16288	839 aa		11.45	□□□□□ -0.58
CTSA-215	ENST00000607187	UBE2S	Q16763	222 aa		11.45	□□□□□ -0.58
CTSA-215	ENST00000607187	PFKFB3	Q16875	520 aa	Predicted RBP	11.45	□□□□□ -0.58
CTSA-215	ENST00000607187	GNPTAB	Q3T906	1256 aa		11.45	□□□□□ -0.58
CTSA-215	ENST00000607187	CELF3	Q5SZQ8	465 aa	Known RBP	11.45	□□□□□ -0.58
CTSA-215	ENST00000607187	XRRA1	Q6P2D8	792 aa		11.45	□□□□□ -0.58
CTSA-215	ENST00000607187	TDH	Q8IZJ6	230 aa		11.45	□□□□□ -0.58
CTSA-215	ENST00000607187	ZNF713	Q8N859	430 aa	Predicted RBP	11.45	□□□□□ -0.58
CTSA-215	ENST00000607187	IL17RA	Q96F46	866 aa		11.45	□□□□□ -0.58
CTSA-215	ENST00000607187	INPP4A	Q96PE3	977 aa	Predicted RBP	11.45	□□□□□ -0.58
CTSA-215	ENST00000607187	RIC8A	Q9NPQ8	531 aa		11.45	□□□□□ -0.58
CTSA-215	ENST00000607187	PCDHGA10	Q9Y5H3	936 aa		11.45	□□□□□ -0.58
CTSA-215	ENST00000607187	KAT6A	Q92794	2004 aa		11.45	□□□□□ -0.58
CTSA-215	ENST00000607187	SPDYE3	A6NKU9	549 aa		11.44	□□□□□ -0.58
CTSA-215	ENST00000607187	SPATA31C2	B4DYI2	1134 aa		11.44	□□□□□ -0.58
CTSA-215	ENST00000607187	TLR3	O15455	904 aa	Known RBP	11.44	□□□□□ -0.58
CTSA-215	ENST00000607187	PRPF3	O43395	683 aa	Known RBP	11.44	□□□□□ -0.58
CTSA-215	ENST00000607187	TIMP1	P01033	207 aa		11.44	□□□□□ -0.58
CTSA-215	ENST00000607187	HOXD8	P13378	290 aa	Predicted RBP	11.44	□□□□□ -0.58
CTSA-215	ENST00000607187	SCG2	P13521	617 aa		11.44	□□□□□ -0.58
CTSA-215	ENST00000607187	RAG1	P15918	1043 aa		11.44	□□□□□ -0.58
CTSA-215	ENST00000607187	UBA1	P22314	1058 aa	Known RBP	11.44	□□□□□ -0.58
CTSA-215	ENST00000607187	NAPA	P54920	295 aa		11.44	□□□□□ -0.58
CTSA-215	ENST00000607187	PKN1	Q16512	942 aa		11.44	□□□□□ -0.58
CTSA-215	ENST00000607187	DGKD	Q16760	1214 aa		11.44	□□□□□ -0.58
CTSA-215	ENST00000607187	NFRKB	Q6P4R8	1299 aa		11.44	□□□□□ -0.58
CTSA-215	ENST00000607187	DHX37	Q8IY37	1157 aa	Known RBP	11.44	□□□□□ -0.58
CTSA-215	ENST00000607187	RETREG2	Q8NC44	543 aa		11.44	□□□□□ -0.58
CTSA-215	ENST00000607187	PPTC7	Q8NI37	304 aa		11.44	□□□□□ -0.58
CTSA-215	ENST00000607187	ZNF274	Q96GC6	653 aa	Predicted RBP	11.44	□□□□□ -0.58
CTSA-215	ENST00000607187	PDRG1	Q9NUG6	133 aa		11.44	□□□□□ -0.58
CTSA-215	ENST00000607187	RTEL1	Q9NZ71	1219 aa		11.44	□□□□□ -0.58
CTSA-215	ENST00000607187	PCDHA6	Q9UN73	950 aa		11.44	□□□□□ -0.58
CTSA-215	ENST00000607187	PCDHA8	Q9Y5H6	950 aa		11.44	□□□□□ -0.58
CTSA-215	ENST00000607187	CDH23	Q9H251	3354 aa		11.43	□□□□□ -0.58
CTSA-215	ENST00000607187	SMCO2	A6NFE2	343 aa		11.43	□□□□□ -0.58
CTSA-215	ENST00000607187	FIBP	O43427	364 aa		11.43	□□□□□ -0.58
CTSA-215	ENST00000607187	B4GALT4	O60513	344 aa		11.43	□□□□□ -0.58
CTSA-215	ENST00000607187	PPFIA4	O75335	1185 aa		11.43	□□□□□ -0.58
CTSA-215	ENST00000607187	SLC34A2	O95436	690 aa		11.43	□□□□□ -0.58
CTSA-215	ENST00000607187	SEC24B	O95487	1268 aa		11.43	□□□□□ -0.58
CTSA-215	ENST00000607187	GGPS1	O95749	300 aa		11.43	□□□□□ -0.58
CTSA-215	ENST00000607187	IFNAR1	P17181	557 aa		11.43	□□□□□ -0.58
CTSA-215	ENST00000607187	ADCY7	P51828	1080 aa		11.43	□□□□□ -0.58
CTSA-215	ENST00000607187	CCT2	P78371	535 aa	Known RBP	11.43	□□□□□ -0.58
CTSA-215	ENST00000607187	SEMA3F	Q13275	785 aa		11.43	□□□□□ -0.58
CTSA-215	ENST00000607187	NBPF20	Q3BBV1	942 aa		11.43	□□□□□ -0.58
CTSA-215	ENST00000607187	KAT2B	Q92831	832 aa		11.43	□□□□□ -0.58
CTSA-215	ENST00000607187	PHKB	Q93100	1093 aa		11.43	□□□□□ -0.58
CTSA-215	ENST00000607187	SPATA33	Q96N06	139 aa		11.43	□□□□□ -0.58
CTSA-215	ENST00000607187	RNF26	Q9BY78	433 aa	Predicted RBP	11.43	□□□□□ -0.58
CTSA-215	ENST00000607187	GLT8D2	Q9H1C3	349 aa		11.43	□□□□□ -0.58
CTSA-215	ENST00000607187	TRPV6	Q9H1D0	765 aa		11.43	□□□□□ -0.58
CTSA-215	ENST00000607187	ALDH8A1	Q9H2A2	487 aa	Predicted RBP	11.43	□□□□□ -0.58
CTSA-215	ENST00000607187	NCOA5	Q9HCD5	579 aa	Known RBP	11.43	□□□□□ -0.58
CTSA-215	ENST00000607187	COL6A3	P12111	3177 aa		11.42	□□□□□ -0.58
CTSA-215	ENST00000607187	ESYT2	A0FGR8	921 aa		11.42	□□□□□ -0.58
CTSA-215	ENST00000607187	FOS	P01100	380 aa	Predicted RBP	11.42	□□□□□ -0.58
CTSA-215	ENST00000607187	ITGB5	P18084	799 aa		11.42	□□□□□ -0.58
CTSA-215	ENST00000607187	PTPN11	Q06124	597 aa	Predicted RBP	11.42	□□□□□ -0.58
CTSA-215	ENST00000607187	NEDD9	Q14511	834 aa		11.42	□□□□□ -0.58
CTSA-215	ENST00000607187	HSDL1	Q3SXM5	330 aa		11.42	□□□□□ -0.58
CTSA-215	ENST00000607187	LRIT3	Q3SXY7	679 aa		11.42	□□□□□ -0.58
CTSA-215	ENST00000607187	MFSD5	Q6N075	450 aa		11.42	□□□□□ -0.58
CTSA-215	ENST00000607187	METTL7B	Q6UX53	244 aa		11.42	□□□□□ -0.58
CTSA-215	ENST00000607187	GPRASP2	Q96D09	838 aa		11.42	□□□□□ -0.58
CTSA-215	ENST00000607187	SENP7	Q9BQF6	1050 aa		11.42	□□□□□ -0.58
CTSA-215	ENST00000607187	ZMYND12	Q9H0C1	365 aa		11.42	□□□□□ -0.58
CTSA-215	ENST00000607187	BCAS3	Q9H6U6	928 aa		11.42	□□□□□ -0.58
CTSA-215	ENST00000607187	MLXIP	Q9HAP2	919 aa		11.42	□□□□□ -0.58
CTSA-215	ENST00000607187	TRMT13	Q9NUP7	481 aa	Known RBP	11.42	□□□□□ -0.58
CTSA-215	ENST00000607187	UBIAD1	Q9Y5Z9	338 aa		11.42	□□□□□ -0.58
CTSA-215	ENST00000607187	SOX1	O00570	391 aa	Predicted RBP	11.41	□□□□□ -0.58
CTSA-215	ENST00000607187	SORBS3	O60504	671 aa		11.41	□□□□□ -0.58
CTSA-215	ENST00000607187	F2	P00734	622 aa		11.41	□□□□□ -0.58
CTSA-215	ENST00000607187	SUPT20HL2	P0C7V6	817 aa		11.41	□□□□□ -0.58

Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms