RNA–Protein interactions for RNA: ENST00000600791.5

SHKBP1-226, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 494 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-226ENST00000600791 PHOSPHO2Q8TCD6 241 aa17.3■□□□□ 0.36
SHKBP1-226ENST00000600791 TCEANC2Q96MN5 208 aa17.3■□□□□ 0.36
SHKBP1-226ENST00000600791 NEK1Q96PY6 1258 aa17.3■□□□□ 0.36
SHKBP1-226ENST00000600791 TUT1Q9H6E5 874 aaKnown RBP17.3■□□□□ 0.36
SHKBP1-226ENST00000600791 PSTPIP2Q9H939 334 aa17.3■□□□□ 0.36
SHKBP1-226ENST00000600791 REV3LO60673 3130 aa17.3■□□□□ 0.36
SHKBP1-226ENST00000600791 RBAK-RBAKDNI3L0D1 243 aa17.29■□□□□ 0.36
SHKBP1-226ENST00000600791 PARNO95453 639 aaKnown RBP17.29■□□□□ 0.36
SHKBP1-226ENST00000600791 HOXC8P31273 242 aa17.29■□□□□ 0.36
SHKBP1-226ENST00000600791 UBE2SQ16763 222 aa17.29■□□□□ 0.36
SHKBP1-226ENST00000600791 SERINC5Q86VE9 423 aa17.29■□□□□ 0.36
SHKBP1-226ENST00000600791 HERC6Q8IVU3 1022 aa17.29■□□□□ 0.36
SHKBP1-226ENST00000600791 RASEFQ8IZ41 740 aa17.29■□□□□ 0.36
SHKBP1-226ENST00000600791 GPR20Q99678 358 aa17.29■□□□□ 0.36
SHKBP1-226ENST00000600791 TELO2Q9Y4R8 837 aa17.29■□□□□ 0.36
SHKBP1-226ENST00000600791 MUC3AQ02505 3323 aa17.28■□□□□ 0.36
SHKBP1-226ENST00000600791 CNTNAP5Q8WYK1 1306 aa17.28■□□□□ 0.36
SHKBP1-226ENST00000600791 SMIM10L2AP0DMW4 78 aa17.28■□□□□ 0.36
SHKBP1-226ENST00000600791 SMIM10L2BP0DMW5 78 aa17.28■□□□□ 0.36
SHKBP1-226ENST00000600791 IGFBP4P22692 258 aa17.28■□□□□ 0.36
SHKBP1-226ENST00000600791 KCNJ6P48051 423 aa17.28■□□□□ 0.36
SHKBP1-226ENST00000600791 WDR5P61964 334 aaKnown RBP17.28■□□□□ 0.36
SHKBP1-226ENST00000600791 EXOSC10Q01780 885 aaKnown RBP17.28■□□□□ 0.36
SHKBP1-226ENST00000600791 MBTPS1Q14703 1052 aa17.28■□□□□ 0.36
SHKBP1-226ENST00000600791 TCTN1Q2MV58 587 aa17.28■□□□□ 0.36
SHKBP1-226ENST00000600791 ADCK5Q3MIX3 580 aa17.28■□□□□ 0.36
SHKBP1-226ENST00000600791 TSGA10IPQ3SY00 556 aa17.28■□□□□ 0.36
SHKBP1-226ENST00000600791 ZNF618Q5T7W0 954 aa17.28■□□□□ 0.36
SHKBP1-226ENST00000600791 CNKSR3Q6P9H4 555 aa17.28■□□□□ 0.36
SHKBP1-226ENST00000600791 SYNE3Q6ZMZ3 975 aa17.28■□□□□ 0.36
SHKBP1-226ENST00000600791 DHX32Q7L7V1 743 aaKnown RBP17.28■□□□□ 0.36
SHKBP1-226ENST00000600791 HEATR3Q7Z4Q2 680 aa17.28■□□□□ 0.36
SHKBP1-226ENST00000600791 NLRX1Q86UT6 975 aa17.28■□□□□ 0.36
SHKBP1-226ENST00000600791 TRIM50Q86XT4 487 aa17.28■□□□□ 0.36
SHKBP1-226ENST00000600791 PPM1EQ8WY54 764 aa17.28■□□□□ 0.36
SHKBP1-226ENST00000600791 SENP7Q9BQF6 1050 aa17.28■□□□□ 0.36
SHKBP1-226ENST00000600791 USP26Q9BXU7 913 aa17.28■□□□□ 0.36
SHKBP1-226ENST00000600791 C17orf102A2RUQ5 167 aa17.27■□□□□ 0.36
SHKBP1-226ENST00000600791 ARHGEF15O94989 841 aa17.27■□□□□ 0.36
SHKBP1-226ENST00000600791 SP4Q02446 784 aa17.27■□□□□ 0.36
SHKBP1-226ENST00000600791 ATP6V0A1Q93050 837 aa17.27■□□□□ 0.36
SHKBP1-226ENST00000600791 PRDM6Q9NQX0 595 aa17.27■□□□□ 0.36
SHKBP1-226ENST00000600791 RBM28Q9NW13 759 aaKnown RBP17.27■□□□□ 0.36
SHKBP1-226ENST00000600791 BRPF3Q9ULD4 1205 aa17.27■□□□□ 0.36
SHKBP1-226ENST00000600791 XIRP2A4UGR9 3374 aa17.26■□□□□ 0.35
SHKBP1-226ENST00000600791 SPDYE3A6NKU9 549 aa17.26■□□□□ 0.35
SHKBP1-226ENST00000600791 ITGB5P18084 799 aa17.26■□□□□ 0.35
SHKBP1-226ENST00000600791 THPOP40225 353 aa17.26■□□□□ 0.35
SHKBP1-226ENST00000600791 DEFB103AP81534 67 aa17.26■□□□□ 0.35
SHKBP1-226ENST00000600791 RTN1Q16799 776 aa17.26■□□□□ 0.35
SHKBP1-226ENST00000600791 WWC2Q6AWC2 1192 aa17.26■□□□□ 0.35
SHKBP1-226ENST00000600791 TMCO2Q7Z6W1 182 aaPredicted RBP17.26■□□□□ 0.35
SHKBP1-226ENST00000600791 GPRASP2Q96D09 838 aa17.26■□□□□ 0.35
SHKBP1-226ENST00000600791 RNPEPQ9H4A4 650 aa17.26■□□□□ 0.35
SHKBP1-226ENST00000600791 KIF28PB7ZC32 967 aa17.25■□□□□ 0.35
SHKBP1-226ENST00000600791 TREHO43280 583 aa17.25■□□□□ 0.35
SHKBP1-226ENST00000600791 ZBTB43O43298 467 aa17.25■□□□□ 0.35
SHKBP1-226ENST00000600791 ATP9AO75110 1047 aa17.25■□□□□ 0.35
SHKBP1-226ENST00000600791 KCNA2P16389 499 aa17.25■□□□□ 0.35
SHKBP1-226ENST00000600791 TAP1Q03518 808 aa17.25■□□□□ 0.35
SHKBP1-226ENST00000600791 FUT2Q10981 343 aa17.25■□□□□ 0.35
SHKBP1-226ENST00000600791 KRT32Q14532 448 aa17.25■□□□□ 0.35
SHKBP1-226ENST00000600791 CCDC85BQ15834 202 aaPredicted RBP17.25■□□□□ 0.35
SHKBP1-226ENST00000600791 UTP14CQ5TAP6 766 aaKnown RBP17.25■□□□□ 0.35
SHKBP1-226ENST00000600791 TYW1BQ6NUM6 668 aa17.25■□□□□ 0.35
SHKBP1-226ENST00000600791 GIMAP8Q8ND71 665 aaPredicted RBP17.25■□□□□ 0.35
SHKBP1-226ENST00000600791 CDHR1Q96JP9 859 aa17.25■□□□□ 0.35
SHKBP1-226ENST00000600791 CERS4Q9HA82 394 aa17.25■□□□□ 0.35
SHKBP1-226ENST00000600791 ZNF215Q9UL58 517 aaPredicted RBP17.25■□□□□ 0.35
SHKBP1-226ENST00000600791 PCDHA6Q9UN73 950 aa17.25■□□□□ 0.35
SHKBP1-226ENST00000600791 PCDHA8Q9Y5H6 950 aa17.25■□□□□ 0.35
SHKBP1-226ENST00000600791 UBIAD1Q9Y5Z9 338 aa17.25■□□□□ 0.35
SHKBP1-226ENST00000600791 EMSYQ7Z589 1322 aa17.24■□□□□ 0.35
SHKBP1-226ENST00000600791 PRRC2BQ5JSZ5 2229 aaKnown RBP17.24■□□□□ 0.35
SHKBP1-226ENST00000600791 KLF18A0A0U1RQI7 1052 aa17.24■□□□□ 0.35
SHKBP1-226ENST00000600791 ABHD14A-ACY1A0A1B0GW23 586 aa17.24■□□□□ 0.35
SHKBP1-226ENST00000600791 RSPH10B2B2RC85 870 aa17.24■□□□□ 0.35
SHKBP1-226ENST00000600791 TLL1O43897 1013 aa17.24■□□□□ 0.35
SHKBP1-226ENST00000600791 LGR5O75473 907 aa17.24■□□□□ 0.35
SHKBP1-226ENST00000600791 RSPH10BP0C881 870 aa17.24■□□□□ 0.35
SHKBP1-226ENST00000600791 TCF7P36402 384 aaPredicted RBP17.24■□□□□ 0.35
SHKBP1-226ENST00000600791 MTMR1Q13613 665 aa17.24■□□□□ 0.35
SHKBP1-226ENST00000600791 SETD4Q9NVD3 440 aa17.24■□□□□ 0.35
SHKBP1-226ENST00000600791 COL4A4P53420 1690 aaPredicted RBP17.23■□□□□ 0.35
SHKBP1-226ENST00000600791 MICAL3Q7RTP6 2002 aa17.23■□□□□ 0.35
SHKBP1-226ENST00000600791 LCHNA4D1U4 455 aa17.23■□□□□ 0.35
SHKBP1-226ENST00000600791 EPOPA6NHQ4 379 aa17.23■□□□□ 0.35
SHKBP1-226ENST00000600791 GOLGA8AA7E2F4 631 aa17.23■□□□□ 0.35
SHKBP1-226ENST00000600791 GOLGA8BA8MQT2 603 aa17.23■□□□□ 0.35
SHKBP1-226ENST00000600791 RFXAPO00287 272 aa17.23■□□□□ 0.35
SHKBP1-226ENST00000600791 EFCAB14O75071 495 aa17.23■□□□□ 0.35
SHKBP1-226ENST00000600791 HMGB1P09429 215 aaKnown RBP17.23■□□□□ 0.35
SHKBP1-226ENST00000600791 NAPAP54920 295 aa17.23■□□□□ 0.35
SHKBP1-226ENST00000600791 IKBKEQ14164 716 aa17.23■□□□□ 0.35
SHKBP1-226ENST00000600791 PPP1R18Q6NYC8 613 aa17.23■□□□□ 0.35
SHKBP1-226ENST00000600791 SPRED2Q7Z698 418 aa17.23■□□□□ 0.35
SHKBP1-226ENST00000600791 LMBR1Q8WVP7 490 aa17.23■□□□□ 0.35
SHKBP1-226ENST00000600791 JADE2Q9NQC1 790 aa17.23■□□□□ 0.35
SHKBP1-226ENST00000600791 PKD2L1Q9P0L9 805 aa17.23■□□□□ 0.35
SHKBP1-226ENST00000600791 CAND2O75155 1236 aa17.22■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms