RNA–Protein interactions for RNA: ENST00000599575.5

SHKBP1-219, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 810 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-219ENST00000599575 NECAB2Q7Z6G3 386 aa18.76■□□□□ 0.59
SHKBP1-219ENST00000599575 SLFN12Q8IYM2 578 aa18.76■□□□□ 0.59
SHKBP1-219ENST00000599575 LENG1Q96BZ8 264 aaPredicted RBP18.76■□□□□ 0.59
SHKBP1-219ENST00000599575 ZFP91Q96JP5 570 aaPredicted RBP18.76■□□□□ 0.59
SHKBP1-219ENST00000599575 SPATA33Q96N06 139 aa18.76■□□□□ 0.59
SHKBP1-219ENST00000599575 JPH1Q9HDC5 661 aaPredicted RBP18.76■□□□□ 0.59
SHKBP1-219ENST00000599575 BRCA2P51587 3418 aa18.75■□□□□ 0.59
SHKBP1-219ENST00000599575 KIAA1217Q5T5P2 1943 aa18.75■□□□□ 0.59
SHKBP1-219ENST00000599575 ATP9AO75110 1047 aa18.75■□□□□ 0.59
SHKBP1-219ENST00000599575 BAG4O95429 457 aaKnown RBP18.75■□□□□ 0.59
SHKBP1-219ENST00000599575 TDP2O95551 362 aa18.75■□□□□ 0.59
SHKBP1-219ENST00000599575 COL6A1P12109 1028 aa18.75■□□□□ 0.59
SHKBP1-219ENST00000599575 EN2P19622 333 aaPredicted RBP18.75■□□□□ 0.59
SHKBP1-219ENST00000599575 ACLYP53396 1101 aa18.75■□□□□ 0.59
SHKBP1-219ENST00000599575 KRT76Q01546 638 aa18.75■□□□□ 0.59
SHKBP1-219ENST00000599575 KCNA10Q16322 511 aa18.75■□□□□ 0.59
SHKBP1-219ENST00000599575 CYFIP1Q7L576 1253 aa18.75■□□□□ 0.59
SHKBP1-219ENST00000599575 UBE2Q1Q7Z7E8 422 aa18.75■□□□□ 0.59
SHKBP1-219ENST00000599575 SLC5A5Q92911 643 aa18.75■□□□□ 0.59
SHKBP1-219ENST00000599575 KCNMB3Q9NPA1 279 aa18.75■□□□□ 0.59
SHKBP1-219ENST00000599575 SLC9A2Q9UBY0 812 aa18.75■□□□□ 0.59
SHKBP1-219ENST00000599575 KIAA0100Q14667 2235 aaKnown RBP18.75■□□□□ 0.59
SHKBP1-219ENST00000599575 ELP1O95163 1332 aa18.74■□□□□ 0.59
SHKBP1-219ENST00000599575 KIF28PB7ZC32 967 aa18.74■□□□□ 0.59
SHKBP1-219ENST00000599575 LAD1O00515 517 aa18.74■□□□□ 0.59
SHKBP1-219ENST00000599575 MSH4O15457 936 aa18.74■□□□□ 0.59
SHKBP1-219ENST00000599575 NEMFO60524 1076 aa18.74■□□□□ 0.59
SHKBP1-219ENST00000599575 TMEM63BQ5T3F8 832 aa18.74■□□□□ 0.59
SHKBP1-219ENST00000599575 GJC2Q5T442 439 aaPredicted RBP18.74■□□□□ 0.59
SHKBP1-219ENST00000599575 ZNF746Q6NUN9 644 aaPredicted RBP18.74■□□□□ 0.59
SHKBP1-219ENST00000599575 SMAP1Q8IYB5 467 aaPredicted RBP18.74■□□□□ 0.59
SHKBP1-219ENST00000599575 ETNPPLQ8TBG4 499 aa18.74■□□□□ 0.59
SHKBP1-219ENST00000599575 AFG1LQ8WV93 481 aa18.74■□□□□ 0.59
SHKBP1-219ENST00000599575 SEPT1Q8WYJ6 367 aa18.74■□□□□ 0.59
SHKBP1-219ENST00000599575 COPS5Q92905 334 aa18.74■□□□□ 0.59
SHKBP1-219ENST00000599575 GLT1D1Q96MS3 346 aa18.74■□□□□ 0.59
SHKBP1-219ENST00000599575 FOXD4L1Q9NU39 408 aa18.74■□□□□ 0.59
SHKBP1-219ENST00000599575 DAXXQ9UER7 740 aaPredicted RBP18.74■□□□□ 0.59
SHKBP1-219ENST00000599575 MTMR6Q9Y217 621 aa18.74■□□□□ 0.59
SHKBP1-219ENST00000599575 FAM205CA6NFA0 338 aa18.73■□□□□ 0.59
SHKBP1-219ENST00000599575 DHX15O43143 795 aaKnown RBP18.73■□□□□ 0.59
SHKBP1-219ENST00000599575 ASGR1P07306 291 aa18.73■□□□□ 0.59
SHKBP1-219ENST00000599575 MMP3P08254 477 aa18.73■□□□□ 0.59
SHKBP1-219ENST00000599575 MNX1P50219 401 aaPredicted RBP18.73■□□□□ 0.59
SHKBP1-219ENST00000599575 SOX10P56693 466 aa18.73■□□□□ 0.59
SHKBP1-219ENST00000599575 ITGB3BPQ13352 177 aaPredicted RBP18.73■□□□□ 0.59
SHKBP1-219ENST00000599575 HSDL1Q3SXM5 330 aa18.73■□□□□ 0.59
SHKBP1-219ENST00000599575 TTC38Q5R3I4 469 aa18.73■□□□□ 0.59
SHKBP1-219ENST00000599575 C1orf53Q5VUE5 145 aa18.73■□□□□ 0.59
SHKBP1-219ENST00000599575 RDM1Q8NG50 284 aa18.73■□□□□ 0.59
SHKBP1-219ENST00000599575 GPR20Q99678 358 aa18.73■□□□□ 0.59
SHKBP1-219ENST00000599575 KATNAL1Q9BW62 490 aa18.73■□□□□ 0.59
SHKBP1-219ENST00000599575 C11orf49Q9H6J7 331 aa18.73■□□□□ 0.59
SHKBP1-219ENST00000599575 MARCH6O60337 910 aa18.72■□□□□ 0.59
SHKBP1-219ENST00000599575 GAS7O60861 476 aa18.72■□□□□ 0.59
SHKBP1-219ENST00000599575 BMP15O95972 392 aa18.72■□□□□ 0.59
SHKBP1-219ENST00000599575 SFNP31947 248 aa18.72■□□□□ 0.59
SHKBP1-219ENST00000599575 PURAQ00577 322 aaKnown RBP18.72■□□□□ 0.59
SHKBP1-219ENST00000599575 LRCH2Q5VUJ6 765 aa18.72■□□□□ 0.59
SHKBP1-219ENST00000599575 MTG1Q9BT17 334 aaPredicted RBP18.72■□□□□ 0.59
SHKBP1-219ENST00000599575 TEKT3Q9BXF9 490 aa18.72■□□□□ 0.59
SHKBP1-219ENST00000599575 MYADML2A6NDP7 307 aa18.71■□□□□ 0.59
SHKBP1-219ENST00000599575 SLC37A4O43826 429 aa18.71■□□□□ 0.59
SHKBP1-219ENST00000599575 PSMD10O75832 226 aa18.71■□□□□ 0.59
SHKBP1-219ENST00000599575 ATG7O95352 703 aa18.71■□□□□ 0.59
SHKBP1-219ENST00000599575 MYCNP04198 464 aaPredicted RBP18.71■□□□□ 0.59
SHKBP1-219ENST00000599575 RGS19P49795 217 aa18.71■□□□□ 0.59
SHKBP1-219ENST00000599575 SLC26A2P50443 739 aa18.71■□□□□ 0.59
SHKBP1-219ENST00000599575 BEX3Q00994 111 aa18.71■□□□□ 0.59
SHKBP1-219ENST00000599575 CALCRLQ16602 461 aa18.71■□□□□ 0.59
SHKBP1-219ENST00000599575 TNPO1Q92973 898 aaKnown RBP18.71■□□□□ 0.59
SHKBP1-219ENST00000599575 PAWRQ96IZ0 340 aaKnown RBP18.71■□□□□ 0.59
SHKBP1-219ENST00000599575 MYH7BA7E2Y1 1941 aa18.7■□□□□ 0.58
SHKBP1-219ENST00000599575 A0A1W2PQ45 241 aaPredicted RBP18.7■□□□□ 0.58
SHKBP1-219ENST00000599575 A0A1W2PQY0 241 aa18.7■□□□□ 0.58
SHKBP1-219ENST00000599575 WDR64B1ANS9 1081 aa18.7■□□□□ 0.58
SHKBP1-219ENST00000599575 F2P00734 622 aa18.7■□□□□ 0.58
SHKBP1-219ENST00000599575 TOB1P50616 345 aaPredicted RBP18.7■□□□□ 0.58
SHKBP1-219ENST00000599575 JAK3P52333 1124 aa18.7■□□□□ 0.58
SHKBP1-219ENST00000599575 ACTR2P61160 394 aa18.7■□□□□ 0.58
SHKBP1-219ENST00000599575 MTMR9Q96QG7 549 aa18.7■□□□□ 0.58
SHKBP1-219ENST00000599575 HTATIP2Q9BUP3 242 aa18.7■□□□□ 0.58
SHKBP1-219ENST00000599575 STARD7Q9NQZ5 370 aa18.7■□□□□ 0.58
SHKBP1-219ENST00000599575 PKD2L1Q9P0L9 805 aa18.7■□□□□ 0.58
SHKBP1-219ENST00000599575 ZNF215Q9UL58 517 aaPredicted RBP18.7■□□□□ 0.58
SHKBP1-219ENST00000599575 CEP131Q9UPN4 1083 aa18.7■□□□□ 0.58
SHKBP1-219ENST00000599575 EMSYQ7Z589 1322 aa18.7■□□□□ 0.58
SHKBP1-219ENST00000599575 ZSCAN22P10073 491 aaPredicted RBP18.69■□□□□ 0.58
SHKBP1-219ENST00000599575 MCM7P33993 719 aa18.69■□□□□ 0.58
SHKBP1-219ENST00000599575 TCF7P36402 384 aaPredicted RBP18.69■□□□□ 0.58
SHKBP1-219ENST00000599575 PRPHP41219 470 aa18.69■□□□□ 0.58
SHKBP1-219ENST00000599575 PTPN11Q06124 597 aaPredicted RBP18.69■□□□□ 0.58
SHKBP1-219ENST00000599575 RESTQ13127 1097 aa18.69■□□□□ 0.58
SHKBP1-219ENST00000599575 PPP2R5CQ13362 524 aa18.69■□□□□ 0.58
SHKBP1-219ENST00000599575 ATL3Q6DD88 541 aa18.69■□□□□ 0.58
SHKBP1-219ENST00000599575 MIS18BP1Q6P0N0 1132 aa18.69■□□□□ 0.58
SHKBP1-219ENST00000599575 B3GNT9Q6UX72 402 aa18.69■□□□□ 0.58
SHKBP1-219ENST00000599575 CXCL17Q6UXB2 119 aa18.69■□□□□ 0.58
SHKBP1-219ENST00000599575 PLPPR4Q7Z2D5 763 aa18.69■□□□□ 0.58
SHKBP1-219ENST00000599575 POTEDQ86YR6 584 aa18.69■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms