RNA–Protein interactions for RNA: ENST00000597776.1

LSM4-205, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, human

TSL 2

Gene LSM4, Length 446 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LSM4-205	ENST00000597776	TREH	O43280	583 aa		12.16	□□□□□ -0.46
LSM4-205	ENST00000597776	LGR5	O75473	907 aa		12.16	□□□□□ -0.46
LSM4-205	ENST00000597776	GJB5	O95377	273 aa		12.16	□□□□□ -0.46
LSM4-205	ENST00000597776	PLEKHA8P1	O95397	391 aa		12.16	□□□□□ -0.46
LSM4-205	ENST00000597776	SMIM10L2A	P0DMW4	78 aa		12.16	□□□□□ -0.46
LSM4-205	ENST00000597776	SMIM10L2B	P0DMW5	78 aa		12.16	□□□□□ -0.46
LSM4-205	ENST00000597776	BMP1	P13497	986 aa		12.16	□□□□□ -0.46
LSM4-205	ENST00000597776	RXRA	P19793	462 aa		12.16	□□□□□ -0.46
LSM4-205	ENST00000597776	SP4	Q02446	784 aa		12.16	□□□□□ -0.46
LSM4-205	ENST00000597776	IKBKE	Q14164	716 aa		12.16	□□□□□ -0.46
LSM4-205	ENST00000597776	GNPTAB	Q3T906	1256 aa		12.16	□□□□□ -0.46
LSM4-205	ENST00000597776	USP17L6P	Q6QN14	398 aa		12.16	□□□□□ -0.46
LSM4-205	ENST00000597776	LIN28B	Q6ZN17	250 aa	Known RBP eCLIP	12.16	□□□□□ -0.46
LSM4-205	ENST00000597776	CYFIP1	Q7L576	1253 aa		12.16	□□□□□ -0.46
LSM4-205	ENST00000597776	ATP6V0A1	Q93050	837 aa		12.16	□□□□□ -0.46
LSM4-205	ENST00000597776	SPZ1	Q9BXG8	430 aa		12.16	□□□□□ -0.46
LSM4-205	ENST00000597776	OSBPL7	Q9BZF2	842 aa		12.16	□□□□□ -0.46
LSM4-205	ENST00000597776	TUT1	Q9H6E5	874 aa	Known RBP	12.16	□□□□□ -0.46
LSM4-205	ENST00000597776	DOCK5	Q9H7D0	1870 aa		12.15	□□□□□ -0.46
LSM4-205	ENST00000597776	RSPH10B2	B2RC85	870 aa		12.15	□□□□□ -0.46
LSM4-205	ENST00000597776	FIBP	O43427	364 aa		12.15	□□□□□ -0.46
LSM4-205	ENST00000597776	PRC1	O43663	620 aa		12.15	□□□□□ -0.46
LSM4-205	ENST00000597776	DDAH1	O94760	285 aa		12.15	□□□□□ -0.46
LSM4-205	ENST00000597776	CTSH	P09668	335 aa		12.15	□□□□□ -0.46
LSM4-205	ENST00000597776	RSPH10B	P0C881	870 aa		12.15	□□□□□ -0.46
LSM4-205	ENST00000597776	HOXC8	P31273	242 aa		12.15	□□□□□ -0.46
LSM4-205	ENST00000597776	ICAM3	P32942	547 aa		12.15	□□□□□ -0.46
LSM4-205	ENST00000597776	METTL7B	Q6UX53	244 aa		12.15	□□□□□ -0.46
LSM4-205	ENST00000597776	RAB11FIP4	Q86YS3	637 aa		12.15	□□□□□ -0.46
LSM4-205	ENST00000597776	CMTR1	Q8N1G2	835 aa	Known RBP	12.15	□□□□□ -0.46
LSM4-205	ENST00000597776	DBF4B	Q8NFT6	615 aa		12.15	□□□□□ -0.46
LSM4-205	ENST00000597776	CTCFL	Q8NI51	663 aa	Predicted RBP	12.15	□□□□□ -0.46
LSM4-205	ENST00000597776	SMARCC2	Q8TAQ2	1214 aa		12.15	□□□□□ -0.46
LSM4-205	ENST00000597776	RRP36	Q96EU6	259 aa	Known RBP	12.15	□□□□□ -0.46
LSM4-205	ENST00000597776	RAD9A	Q99638	391 aa		12.15	□□□□□ -0.46
LSM4-205	ENST00000597776	GPR20	Q99678	358 aa		12.15	□□□□□ -0.46
LSM4-205	ENST00000597776	BDP1	A6H8Y1	2624 aa		12.15	□□□□□ -0.46
LSM4-205	ENST00000597776	EMSY	Q7Z589	1322 aa		12.14	□□□□□ -0.47
LSM4-205	ENST00000597776	TCF20	Q9UGU0	1960 aa	Known RBP	12.14	□□□□□ -0.47
LSM4-205	ENST00000597776	LINC01553	A4QN01	128 aa		12.14	□□□□□ -0.47
LSM4-205	ENST00000597776	SH2B2	O14492	632 aa	Predicted RBP	12.14	□□□□□ -0.47
LSM4-205	ENST00000597776	MEIS2	O14770	477 aa		12.14	□□□□□ -0.47
LSM4-205	ENST00000597776	EFCAB14	O75071	495 aa		12.14	□□□□□ -0.47
LSM4-205	ENST00000597776	STAM2	O75886	525 aa		12.14	□□□□□ -0.47
LSM4-205	ENST00000597776	KIF5B	P33176	963 aa		12.14	□□□□□ -0.47
LSM4-205	ENST00000597776	MKRN4P	Q13434	485 aa	Predicted RBP	12.14	□□□□□ -0.47
LSM4-205	ENST00000597776	NEDD9	Q14511	834 aa		12.14	□□□□□ -0.47
LSM4-205	ENST00000597776	AAK1	Q2M2I8	961 aa		12.14	□□□□□ -0.47
LSM4-205	ENST00000597776	PLEKHG4	Q58EX7	1191 aa		12.14	□□□□□ -0.47
LSM4-205	ENST00000597776	UTP14C	Q5TAP6	766 aa	Known RBP	12.14	□□□□□ -0.47
LSM4-205	ENST00000597776	PCNX4	Q63HM2	1172 aa		12.14	□□□□□ -0.47
LSM4-205	ENST00000597776	CASC1	Q6TDU7	716 aa		12.14	□□□□□ -0.47
LSM4-205	ENST00000597776	NFXL1	Q6ZNB6	911 aa		12.14	□□□□□ -0.47
LSM4-205	ENST00000597776	MYOCD	Q8IZQ8	938 aa		12.14	□□□□□ -0.47
LSM4-205	ENST00000597776	SRBD1	Q8N5C6	995 aa	Known RBP	12.14	□□□□□ -0.47
LSM4-205	ENST00000597776	CUL5	Q93034	780 aa		12.14	□□□□□ -0.47
LSM4-205	ENST00000597776	MAP3K14	Q99558	947 aa		12.14	□□□□□ -0.47
LSM4-205	ENST00000597776	LSG1	Q9H089	658 aa	Known RBP	12.14	□□□□□ -0.47
LSM4-205	ENST00000597776	RNPEP	Q9H4A4	650 aa		12.14	□□□□□ -0.47
LSM4-205	ENST00000597776	SUGCT	Q9HAC7	445 aa		12.14	□□□□□ -0.47
LSM4-205	ENST00000597776	SETD4	Q9NVD3	440 aa		12.14	□□□□□ -0.47
LSM4-205	ENST00000597776	SEC63	Q9UGP8	760 aa	Known RBP	12.14	□□□□□ -0.47
LSM4-205	ENST00000597776	hCG_1642624	A0A1W2PR95	340 aa		12.13	□□□□□ -0.47
LSM4-205	ENST00000597776	PIK3CD	O00329	1044 aa		12.13	□□□□□ -0.47
LSM4-205	ENST00000597776	SLC27A2	O14975	620 aa		12.13	□□□□□ -0.47
LSM4-205	ENST00000597776	ERVK-21	P61565	698 aa		12.13	□□□□□ -0.47
LSM4-205	ENST00000597776	UBE2S	Q16763	222 aa		12.13	□□□□□ -0.47
LSM4-205	ENST00000597776	TGS1	Q96RS0	853 aa	Known RBP	12.13	□□□□□ -0.47
LSM4-205	ENST00000597776	C17orf80	Q9BSJ5	609 aa		12.13	□□□□□ -0.47
LSM4-205	ENST00000597776	USP26	Q9BXU7	913 aa		12.13	□□□□□ -0.47
LSM4-205	ENST00000597776	LRRC2	Q9BYS8	371 aa		12.13	□□□□□ -0.47
LSM4-205	ENST00000597776	CCDC69	A6NI79	296 aa		12.12	□□□□□ -0.47
LSM4-205	ENST00000597776	AMH	P03971	560 aa		12.12	□□□□□ -0.47
LSM4-205	ENST00000597776	MCM5	P33992	734 aa		12.12	□□□□□ -0.47
LSM4-205	ENST00000597776	ARHGAP4	P98171	946 aa		12.12	□□□□□ -0.47
LSM4-205	ENST00000597776	CCDC82	Q8N4S0	544 aa		12.12	□□□□□ -0.47
LSM4-205	ENST00000597776	LMBR1	Q8WVP7	490 aa		12.12	□□□□□ -0.47
LSM4-205	ENST00000597776	HLA-C	Q95604	372 aa		12.12	□□□□□ -0.47
LSM4-205	ENST00000597776	TMEM87B	Q96K49	555 aa		12.12	□□□□□ -0.47
LSM4-205	ENST00000597776	LZTS2	Q9BRK4	669 aa		12.12	□□□□□ -0.47
LSM4-205	ENST00000597776	ESYT1	Q9BSJ8	1104 aa		12.12	□□□□□ -0.47
LSM4-205	ENST00000597776	PKD2L1	Q9P0L9	805 aa		12.12	□□□□□ -0.47
LSM4-205	ENST00000597776	RAPGEFL1	Q9UHV5	662 aa		12.12	□□□□□ -0.47
LSM4-205	ENST00000597776	ZNF215	Q9UL58	517 aa	Predicted RBP	12.12	□□□□□ -0.47
LSM4-205	ENST00000597776	COG5	Q9UP83	839 aa		12.12	□□□□□ -0.47
LSM4-205	ENST00000597776	INSL6	Q9Y581	213 aa		12.12	□□□□□ -0.47
LSM4-205	ENST00000597776	SI	P14410	1827 aa		12.11	□□□□□ -0.47
LSM4-205	ENST00000597776	MICAL3	Q7RTP6	2002 aa		12.11	□□□□□ -0.47
LSM4-205	ENST00000597776	ATP9A	O75110	1047 aa		12.11	□□□□□ -0.47
LSM4-205	ENST00000597776	GNAT1	P11488	350 aa		12.11	□□□□□ -0.47
LSM4-205	ENST00000597776	KCNA2	P16389	499 aa		12.11	□□□□□ -0.47
LSM4-205	ENST00000597776	ITGB5	P18084	799 aa		12.11	□□□□□ -0.47
LSM4-205	ENST00000597776	COL9A1	P20849	921 aa		12.11	□□□□□ -0.47
LSM4-205	ENST00000597776	SMARCA1	P28370	1054 aa		12.11	□□□□□ -0.47
LSM4-205	ENST00000597776	TCF7	P36402	384 aa	Predicted RBP	12.11	□□□□□ -0.47
LSM4-205	ENST00000597776	GNAQ	P50148	359 aa		12.11	□□□□□ -0.47
LSM4-205	ENST00000597776	ADAM17	P78536	824 aa		12.11	□□□□□ -0.47
LSM4-205	ENST00000597776	CREB3L3	Q68CJ9	461 aa		12.11	□□□□□ -0.47
LSM4-205	ENST00000597776	XRRA1	Q6P2D8	792 aa		12.11	□□□□□ -0.47
LSM4-205	ENST00000597776	RUFY4	Q6ZNE9	571 aa		12.11	□□□□□ -0.47

Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms