RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 MAGEF1Q9HAY2 307 aa17.13■□□□□ 0.33
TRIM28-209ENST00000597423 DISC1Q9NRI5 854 aa17.13■□□□□ 0.33
TRIM28-209ENST00000597423 TMEM63CQ9P1W3 806 aa17.13■□□□□ 0.33
TRIM28-209ENST00000597423 MYH7BA7E2Y1 1941 aa17.12■□□□□ 0.33
TRIM28-209ENST00000597423 MUTP22033 750 aa17.12■□□□□ 0.33
TRIM28-209ENST00000597423 CDC25AP30304 524 aa17.12■□□□□ 0.33
TRIM28-209ENST00000597423 SFNP31947 248 aa17.12■□□□□ 0.33
TRIM28-209ENST00000597423 CCT6AP40227 531 aaKnown RBP17.12■□□□□ 0.33
TRIM28-209ENST00000597423 AMPD3Q01432 767 aa17.12■□□□□ 0.33
TRIM28-209ENST00000597423 NEDD9Q14511 834 aa17.12■□□□□ 0.33
TRIM28-209ENST00000597423 EPHA7Q15375 998 aa17.12■□□□□ 0.33
TRIM28-209ENST00000597423 CAMK4Q16566 473 aa17.12■□□□□ 0.33
TRIM28-209ENST00000597423 ZSCAN23Q3MJ62 389 aa17.12■□□□□ 0.33
TRIM28-209ENST00000597423 LONRF3Q496Y0 759 aa17.12■□□□□ 0.33
TRIM28-209ENST00000597423 MAMDC4Q6UXC1 1216 aa17.12■□□□□ 0.33
TRIM28-209ENST00000597423 RDM1Q8NG50 284 aa17.12■□□□□ 0.33
TRIM28-209ENST00000597423 NEK9Q8TD19 979 aa17.12■□□□□ 0.33
TRIM28-209ENST00000597423 UIMC1Q96RL1 719 aa17.12■□□□□ 0.33
TRIM28-209ENST00000597423 POLR3CQ9BUI4 534 aaPredicted RBP17.12■□□□□ 0.33
TRIM28-209ENST00000597423 RNF186Q9NXI6 227 aa17.12■□□□□ 0.33
TRIM28-209ENST00000597423 VAV3Q9UKW4 847 aa17.12■□□□□ 0.33
TRIM28-209ENST00000597423 NFASCO94856 1347 aa17.12■□□□□ 0.33
TRIM28-209ENST00000597423 RBBP6Q7Z6E9 1792 aaKnown RBP17.11■□□□□ 0.33
TRIM28-209ENST00000597423 POTEMA6NI47 508 aa17.11■□□□□ 0.33
TRIM28-209ENST00000597423 HOXC6P09630 235 aa17.11■□□□□ 0.33
TRIM28-209ENST00000597423 RPA1P27694 616 aa17.11■□□□□ 0.33
TRIM28-209ENST00000597423 HOXD10P28358 340 aa17.11■□□□□ 0.33
TRIM28-209ENST00000597423 JAK3P52333 1124 aa17.11■□□□□ 0.33
TRIM28-209ENST00000597423 SP3Q02447 781 aa17.11■□□□□ 0.33
TRIM28-209ENST00000597423 KARSQ15046 597 aaKnown RBP17.11■□□□□ 0.33
TRIM28-209ENST00000597423 ZNF746Q6NUN9 644 aaPredicted RBP17.11■□□□□ 0.33
TRIM28-209ENST00000597423 MIER3Q7Z3K6 550 aa17.11■□□□□ 0.33
TRIM28-209ENST00000597423 GJA10Q969M2 543 aa17.11■□□□□ 0.33
TRIM28-209ENST00000597423 TUFT1Q9NNX1 390 aa17.11■□□□□ 0.33
TRIM28-209ENST00000597423 VTA1Q9NP79 307 aa17.11■□□□□ 0.33
TRIM28-209ENST00000597423 STK17AQ9UEE5 414 aa17.11■□□□□ 0.33
TRIM28-209ENST00000597423 SERTAD1Q9UHV2 236 aa17.11■□□□□ 0.33
TRIM28-209ENST00000597423 PP2D1A8MPX8 630 aa17.1■□□□□ 0.33
TRIM28-209ENST00000597423 DHX15O43143 795 aaKnown RBP17.1■□□□□ 0.33
TRIM28-209ENST00000597423 DKC1O60832 514 aaKnown RBP eCLIP17.1■□□□□ 0.33
TRIM28-209ENST00000597423 TRPA1O75762 1119 aa17.1■□□□□ 0.33
TRIM28-209ENST00000597423 SMC2O95347 1197 aa17.1■□□□□ 0.33
TRIM28-209ENST00000597423 TBC1D8O95759 1140 aa17.1■□□□□ 0.33
TRIM28-209ENST00000597423 MYL1P05976 194 aa17.1■□□□□ 0.33
TRIM28-209ENST00000597423 PSMC4P43686 418 aa17.1■□□□□ 0.33
TRIM28-209ENST00000597423 LACTBP83111 547 aaPredicted RBP17.1■□□□□ 0.33
TRIM28-209ENST00000597423 SPIRE1Q08AE8 756 aa17.1■□□□□ 0.33
TRIM28-209ENST00000597423 TTLL4Q14679 1199 aa17.1■□□□□ 0.33
TRIM28-209ENST00000597423 HYIQ5T013 277 aa17.1■□□□□ 0.33
TRIM28-209ENST00000597423 ARMCX2Q7L311 632 aa17.1■□□□□ 0.33
TRIM28-209ENST00000597423 SMAP1Q8IYB5 467 aaPredicted RBP17.1■□□□□ 0.33
TRIM28-209ENST00000597423 SCFD2Q8WU76 684 aa17.1■□□□□ 0.33
TRIM28-209ENST00000597423 MAML3Q96JK9 1138 aa17.1■□□□□ 0.33
TRIM28-209ENST00000597423 FGD4Q96M96 766 aa17.1■□□□□ 0.33
TRIM28-209ENST00000597423 TINF2Q9BSI4 451 aa17.1■□□□□ 0.33
TRIM28-209ENST00000597423 BEGAINQ9BUH8 593 aa17.1■□□□□ 0.33
TRIM28-209ENST00000597423 SAGE1Q9NXZ1 904 aa17.1■□□□□ 0.33
TRIM28-209ENST00000597423 PKD2L1Q9P0L9 805 aa17.1■□□□□ 0.33
TRIM28-209ENST00000597423 SAMM50Q9Y512 469 aa17.1■□□□□ 0.33
TRIM28-209ENST00000597423 ASTN1O14525 1302 aa17.1■□□□□ 0.33
TRIM28-209ENST00000597423 SYNGAP1Q96PV0 1343 aa17.1■□□□□ 0.33
TRIM28-209ENST00000597423 WDR64B1ANS9 1081 aa17.09■□□□□ 0.33
TRIM28-209ENST00000597423 CHMP2AO43633 222 aa17.09■□□□□ 0.33
TRIM28-209ENST00000597423 ATP9AO75110 1047 aa17.09■□□□□ 0.33
TRIM28-209ENST00000597423 RGS20O76081 388 aa17.09■□□□□ 0.33
TRIM28-209ENST00000597423 KCNA2P16389 499 aa17.09■□□□□ 0.33
TRIM28-209ENST00000597423 ITGB3BPQ13352 177 aaPredicted RBP17.09■□□□□ 0.33
TRIM28-209ENST00000597423 IRF5Q13568 498 aa17.09■□□□□ 0.33
TRIM28-209ENST00000597423 SASS6Q6UVJ0 657 aa17.09■□□□□ 0.33
TRIM28-209ENST00000597423 SV2BQ7L1I2 683 aa17.09■□□□□ 0.33
TRIM28-209ENST00000597423 TRMT44Q8IYL2 757 aaKnown RBP17.09■□□□□ 0.33
TRIM28-209ENST00000597423 EIF2AK1Q9BQI3 630 aaKnown RBP17.09■□□□□ 0.33
TRIM28-209ENST00000597423 MMTAG2Q9BU76 263 aaKnown RBP17.09■□□□□ 0.33
TRIM28-209ENST00000597423 UNC45AQ9H3U1 944 aa17.09■□□□□ 0.33
TRIM28-209ENST00000597423 JPH1Q9HDC5 661 aaPredicted RBP17.09■□□□□ 0.33
TRIM28-209ENST00000597423 SLC9A2Q9UBY0 812 aa17.09■□□□□ 0.33
TRIM28-209ENST00000597423 DNM3Q9UQ16 869 aa17.09■□□□□ 0.33
TRIM28-209ENST00000597423 ACTN4O43707 911 aaKnown RBP17.08■□□□□ 0.32
TRIM28-209ENST00000597423 GNRH1P01148 92 aa17.08■□□□□ 0.32
TRIM28-209ENST00000597423 P4HBP07237 508 aaKnown RBP17.08■□□□□ 0.32
TRIM28-209ENST00000597423 XRCC5P13010 732 aaKnown RBP17.08■□□□□ 0.32
TRIM28-209ENST00000597423 HSPA6P17066 643 aa17.08■□□□□ 0.32
TRIM28-209ENST00000597423 PLCG1P19174 1290 aa17.08■□□□□ 0.32
TRIM28-209ENST00000597423 MAP2K1Q02750 393 aaPredicted RBP17.08■□□□□ 0.32
TRIM28-209ENST00000597423 E2F4Q16254 413 aa17.08■□□□□ 0.32
TRIM28-209ENST00000597423 OLFML2BQ68BL8 750 aa17.08■□□□□ 0.32
TRIM28-209ENST00000597423 B3GNT9Q6UX72 402 aa17.08■□□□□ 0.32
TRIM28-209ENST00000597423 EEPD1Q7L9B9 569 aa17.08■□□□□ 0.32
TRIM28-209ENST00000597423 USP6NLQ92738 828 aa17.08■□□□□ 0.32
TRIM28-209ENST00000597423 PAGE5Q96GU1 130 aa17.08■□□□□ 0.32
TRIM28-209ENST00000597423 APBA2Q99767 749 aa17.08■□□□□ 0.32
TRIM28-209ENST00000597423 HSD17B14Q9BPX1 270 aa17.08■□□□□ 0.32
TRIM28-209ENST00000597423 ABHD16BQ9H3Z7 469 aa17.08■□□□□ 0.32
TRIM28-209ENST00000597423 MLXIPQ9HAP2 919 aa17.08■□□□□ 0.32
TRIM28-209ENST00000597423 BMP2KQ9NSY1 1161 aaPredicted RBP17.08■□□□□ 0.32
TRIM28-209ENST00000597423 CDKN2AIPQ9NXV6 580 aaPredicted RBP17.08■□□□□ 0.32
TRIM28-209ENST00000597423 GJD2Q9UKL4 321 aa17.08■□□□□ 0.32
TRIM28-209ENST00000597423 KIAA1024Q9UPX6 916 aa17.08■□□□□ 0.32
TRIM28-209ENST00000597423 PCDHA10Q9Y5I2 948 aa17.08■□□□□ 0.32
TRIM28-209ENST00000597423 SYCE3A1L190 88 aa17.07■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms