RNA–Protein interactions for RNA: ENST00000596457.1

LIG1-211, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 792 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-211ENST00000596457 UTP14CQ5TAP6 766 aaKnown RBP12.62□□□□□ -0.39
LIG1-211ENST00000596457 C1orf53Q5VUE5 145 aa12.62□□□□□ -0.39
LIG1-211ENST00000596457 GALNT17Q6IS24 598 aa12.62□□□□□ -0.39
LIG1-211ENST00000596457 TEX2Q8IWB9 1127 aa12.62□□□□□ -0.39
LIG1-211ENST00000596457 OXER1Q8TDS5 423 aa12.62□□□□□ -0.39
LIG1-211ENST00000596457 TBCKQ8TEA7 893 aa12.62□□□□□ -0.39
LIG1-211ENST00000596457 TMX3Q96JJ7 454 aa12.62□□□□□ -0.39
LIG1-211ENST00000596457 CDHR1Q96JP9 859 aa12.62□□□□□ -0.39
LIG1-211ENST00000596457 LLPHQ9BRT6 129 aaKnown RBP12.62□□□□□ -0.39
LIG1-211ENST00000596457 BRMS1Q9HCU9 246 aa12.62□□□□□ -0.39
LIG1-211ENST00000596457 PRKAG2Q9UGJ0 569 aa12.62□□□□□ -0.39
LIG1-211ENST00000596457 ELP1O95163 1332 aa12.62□□□□□ -0.39
LIG1-211ENST00000596457 DCDC2CA8MYV0 355 aa12.61□□□□□ -0.39
LIG1-211ENST00000596457 ARVCFO00192 962 aa12.61□□□□□ -0.39
LIG1-211ENST00000596457 KPNA6O60684 536 aa12.61□□□□□ -0.39
LIG1-211ENST00000596457 CYP3A4P08684 503 aa12.61□□□□□ -0.39
LIG1-211ENST00000596457 ZNF286BP0CG31 522 aa12.61□□□□□ -0.39
LIG1-211ENST00000596457 KRT2P35908 639 aa12.61□□□□□ -0.39
LIG1-211ENST00000596457 MCM2P49736 904 aa12.61□□□□□ -0.39
LIG1-211ENST00000596457 NONOQ15233 471 aaKnown RBP eCLIP12.61□□□□□ -0.39
LIG1-211ENST00000596457 NPY5RQ15761 445 aa12.61□□□□□ -0.39
LIG1-211ENST00000596457 INF2Q27J81 1249 aa12.61□□□□□ -0.39
LIG1-211ENST00000596457 NBPF20Q3BBV1 942 aa12.61□□□□□ -0.39
LIG1-211ENST00000596457 PRR16Q569H4 304 aa12.61□□□□□ -0.39
LIG1-211ENST00000596457 KRT40Q6A162 431 aa12.61□□□□□ -0.39
LIG1-211ENST00000596457 KRT25Q7Z3Z0 450 aa12.61□□□□□ -0.39
LIG1-211ENST00000596457 DAGLBQ8NCG7 672 aa12.61□□□□□ -0.39
LIG1-211ENST00000596457 PPTC7Q8NI37 304 aa12.61□□□□□ -0.39
LIG1-211ENST00000596457 C8orf76Q96K31 380 aa12.61□□□□□ -0.39
LIG1-211ENST00000596457 KCNH7Q9NS40 1196 aa12.61□□□□□ -0.39
LIG1-211ENST00000596457 TELO2Q9Y4R8 837 aa12.61□□□□□ -0.39
LIG1-211ENST00000596457 FAM86B1E9PN63 330 aa12.6□□□□□ -0.39
LIG1-211ENST00000596457 TLR3O15455 904 aaKnown RBP12.6□□□□□ -0.39
LIG1-211ENST00000596457 MAFGO15525 162 aa12.6□□□□□ -0.39
LIG1-211ENST00000596457 FAM86B2P0C5J1 330 aa12.6□□□□□ -0.39
LIG1-211ENST00000596457 KCNA2P16389 499 aa12.6□□□□□ -0.39
LIG1-211ENST00000596457 HMGN5P82970 282 aaKnown RBP12.6□□□□□ -0.39
LIG1-211ENST00000596457 NR5A1Q13285 461 aa12.6□□□□□ -0.39
LIG1-211ENST00000596457 SNX17Q15036 470 aa12.6□□□□□ -0.39
LIG1-211ENST00000596457 PIK3AP1Q6ZUJ8 805 aa12.6□□□□□ -0.39
LIG1-211ENST00000596457 SH3RF1Q7Z6J0 888 aa12.6□□□□□ -0.39
LIG1-211ENST00000596457 GIMAP8Q8ND71 665 aaPredicted RBP12.6□□□□□ -0.39
LIG1-211ENST00000596457 EMID1Q96A84 441 aaPredicted RBP12.6□□□□□ -0.39
LIG1-211ENST00000596457 SENP7Q9BQF6 1050 aa12.6□□□□□ -0.39
LIG1-211ENST00000596457 SDF4Q9BRK5 362 aa12.6□□□□□ -0.39
LIG1-211ENST00000596457 AGO4Q9HCK5 861 aaKnown RBP12.6□□□□□ -0.39
LIG1-211ENST00000596457 TMEM39AQ9NV64 488 aa12.6□□□□□ -0.39
LIG1-211ENST00000596457 GRIN2DO15399 1336 aa12.6□□□□□ -0.39
LIG1-211ENST00000596457 BTBD18B2RXH4 712 aa12.59□□□□□ -0.39
LIG1-211ENST00000596457 M0R2N6 131 aa12.59□□□□□ -0.39
LIG1-211ENST00000596457 MEIS1O00470 390 aa12.59□□□□□ -0.39
LIG1-211ENST00000596457 MMP1P03956 469 aa12.59□□□□□ -0.39
LIG1-211ENST00000596457 CLTBP09497 229 aa12.59□□□□□ -0.39
LIG1-211ENST00000596457 PSEN2P49810 448 aa12.59□□□□□ -0.39
LIG1-211ENST00000596457 CDK7P50613 346 aa12.59□□□□□ -0.39
LIG1-211ENST00000596457 USP11P51784 963 aa12.59□□□□□ -0.39
LIG1-211ENST00000596457 GNL2Q13823 731 aaKnown RBP12.59□□□□□ -0.39
LIG1-211ENST00000596457 SAFBQ15424 915 aaKnown RBP eCLIP12.59□□□□□ -0.39
LIG1-211ENST00000596457 LETM2Q2VYF4 491 aa12.59□□□□□ -0.39
LIG1-211ENST00000596457 METTL7BQ6UX53 244 aa12.59□□□□□ -0.39
LIG1-211ENST00000596457 PHF6Q8IWS0 365 aaKnown RBP eCLIP12.59□□□□□ -0.39
LIG1-211ENST00000596457 FAM177A1Q8N128 213 aaPredicted RBP12.59□□□□□ -0.39
LIG1-211ENST00000596457 IL27Q8NEV9 243 aa12.59□□□□□ -0.39
LIG1-211ENST00000596457 GPR20Q99678 358 aa12.59□□□□□ -0.39
LIG1-211ENST00000596457 ZNF577Q9BSK1 485 aa12.59□□□□□ -0.39
LIG1-211ENST00000596457 TRPV6Q9H1D0 765 aa12.59□□□□□ -0.39
LIG1-211ENST00000596457 SLC9A2Q9UBY0 812 aa12.59□□□□□ -0.39
LIG1-211ENST00000596457 MROH7Q68CQ1 1323 aa12.59□□□□□ -0.39
LIG1-211ENST00000596457 LAMA3Q16787 3333 aa12.58□□□□□ -0.4
LIG1-211ENST00000596457 IGLV3-22A0A075B6J6 115 aa12.58□□□□□ -0.4
LIG1-211ENST00000596457 FAM205CA6NFA0 338 aa12.58□□□□□ -0.4
LIG1-211ENST00000596457 PPFIA4O75335 1185 aa12.58□□□□□ -0.4
LIG1-211ENST00000596457 TDP2O95551 362 aa12.58□□□□□ -0.4
LIG1-211ENST00000596457 LGALS2P05162 132 aa12.58□□□□□ -0.4
LIG1-211ENST00000596457 ATP2B1P20020 1258 aa12.58□□□□□ -0.4
LIG1-211ENST00000596457 GJB2P29033 226 aa12.58□□□□□ -0.4
LIG1-211ENST00000596457 TCF7P36402 384 aaPredicted RBP12.58□□□□□ -0.4
LIG1-211ENST00000596457 MDM2Q00987 491 aaPredicted RBP12.58□□□□□ -0.4
LIG1-211ENST00000596457 FAAP100Q0VG06 881 aa12.58□□□□□ -0.4
LIG1-211ENST00000596457 ITGB3BPQ13352 177 aaPredicted RBP12.58□□□□□ -0.4
LIG1-211ENST00000596457 MFSD10Q14728 455 aa12.58□□□□□ -0.4
LIG1-211ENST00000596457 KIAA0753Q2KHM9 967 aa12.58□□□□□ -0.4
LIG1-211ENST00000596457 EARS2Q5JPH6 523 aaKnown RBP12.58□□□□□ -0.4
LIG1-211ENST00000596457 GPR153Q6NV75 609 aa12.58□□□□□ -0.4
LIG1-211ENST00000596457 NIPA1Q7RTP0 329 aa12.58□□□□□ -0.4
LIG1-211ENST00000596457 DIS3L2Q8IYB7 885 aaKnown RBP12.58□□□□□ -0.4
LIG1-211ENST00000596457 CRYGNQ8WXF5 182 aa12.58□□□□□ -0.4
LIG1-211ENST00000596457 SEPT1Q8WYJ6 367 aa12.58□□□□□ -0.4
LIG1-211ENST00000596457 KAT2BQ92831 832 aa12.58□□□□□ -0.4
LIG1-211ENST00000596457 LBHD1Q9BQE6 289 aaPredicted RBP12.58□□□□□ -0.4
LIG1-211ENST00000596457 KATNAL1Q9BW62 490 aa12.58□□□□□ -0.4
LIG1-211ENST00000596457 JPH1Q9HDC5 661 aaPredicted RBP12.58□□□□□ -0.4
LIG1-211ENST00000596457 PDLIM7Q9NR12 457 aa12.58□□□□□ -0.4
LIG1-211ENST00000596457 FOXD4L1Q9NU39 408 aa12.58□□□□□ -0.4
LIG1-211ENST00000596457 SMC3Q9UQE7 1217 aa12.58□□□□□ -0.4
LIG1-211ENST00000596457 STXBP5LQ9Y2K9 1186 aa12.58□□□□□ -0.4
LIG1-211ENST00000596457 VCANP13611 3396 aa12.57□□□□□ -0.4
LIG1-211ENST00000596457 GSTTP1A0A1W2PQM5 241 aa12.57□□□□□ -0.4
LIG1-211ENST00000596457 TRIM43BA6NCK2 446 aa12.57□□□□□ -0.4
LIG1-211ENST00000596457 IPO5O00410 1097 aaKnown RBP12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms