RNA–Protein interactions for RNA: ENST00000594090.5

VRK3-206, Transcript of vaccinia related kinase 3, humanhuman

TSL 1 (best)

Gene VRK3, Length 1,448 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-206ENST00000594090 F2P00734 622 aa16.6■□□□□ 0.25
VRK3-206ENST00000594090 ZNF286BP0CG31 522 aa16.6■□□□□ 0.25
VRK3-206ENST00000594090 ZNF76P36508 570 aa16.6■□□□□ 0.25
VRK3-206ENST00000594090 NBPF20Q3BBV1 942 aa16.6■□□□□ 0.25
VRK3-206ENST00000594090 CHRDL2Q6WN34 429 aa16.6■□□□□ 0.25
VRK3-206ENST00000594090 NIPA1Q7RTP0 329 aa16.6■□□□□ 0.25
VRK3-206ENST00000594090 IL27Q8NEV9 243 aa16.6■□□□□ 0.25
VRK3-206ENST00000594090 KAT2BQ92831 832 aa16.6■□□□□ 0.25
VRK3-206ENST00000594090 TRIM43Q96BQ3 446 aaPredicted RBP16.6■□□□□ 0.25
VRK3-206ENST00000594090 KCNH7Q9NS40 1196 aa16.6■□□□□ 0.25
VRK3-206ENST00000594090 GJB4Q9NTQ9 266 aa16.6■□□□□ 0.25
VRK3-206ENST00000594090 PKD2L1Q9P0L9 805 aa16.6■□□□□ 0.25
VRK3-206ENST00000594090 FAM86B1E9PN63 330 aa16.59■□□□□ 0.25
VRK3-206ENST00000594090 MEIS1O00470 390 aa16.59■□□□□ 0.25
VRK3-206ENST00000594090 PPFIA4O75335 1185 aa16.59■□□□□ 0.25
VRK3-206ENST00000594090 CD4P01730 458 aa16.59■□□□□ 0.25
VRK3-206ENST00000594090 FAM86B2P0C5J1 330 aa16.59■□□□□ 0.25
VRK3-206ENST00000594090 MAGEA10P43363 369 aaPredicted RBP16.59■□□□□ 0.25
VRK3-206ENST00000594090 NFRKBQ6P4R8 1299 aa16.59■□□□□ 0.25
VRK3-206ENST00000594090 GPR20Q99678 358 aa16.59■□□□□ 0.25
VRK3-206ENST00000594090 GDF15Q99988 308 aa16.59■□□□□ 0.25
VRK3-206ENST00000594090 KATNAL1Q9BW62 490 aa16.59■□□□□ 0.25
VRK3-206ENST00000594090 TMEM39AQ9NV64 488 aa16.59■□□□□ 0.25
VRK3-206ENST00000594090 TBX21Q9UL17 535 aa16.59■□□□□ 0.25
VRK3-206ENST00000594090 IGLV3-22A0A075B6J6 115 aa16.58■□□□□ 0.24
VRK3-206ENST00000594090 KIAA0355O15063 1070 aa16.58■□□□□ 0.24
VRK3-206ENST00000594090 B4GALT4O60513 344 aa16.58■□□□□ 0.24
VRK3-206ENST00000594090 ARP10275 920 aa16.58■□□□□ 0.24
VRK3-206ENST00000594090 MDM2Q00987 491 aaPredicted RBP16.58■□□□□ 0.24
VRK3-206ENST00000594090 SP4Q02446 784 aa16.58■□□□□ 0.24
VRK3-206ENST00000594090 FAM47CQ5HY64 1035 aa16.58■□□□□ 0.24
VRK3-206ENST00000594090 PPP1R13LQ8WUF5 828 aa16.58■□□□□ 0.24
VRK3-206ENST00000594090 LLPHQ9BRT6 129 aaKnown RBP16.58■□□□□ 0.24
VRK3-206ENST00000594090 C16orf70Q9BSU1 422 aa16.58■□□□□ 0.24
VRK3-206ENST00000594090 PRO3102Q9H379 93 aa16.58■□□□□ 0.24
VRK3-206ENST00000594090 AGO4Q9HCK5 861 aaKnown RBP16.58■□□□□ 0.24
VRK3-206ENST00000594090 TELO2Q9Y4R8 837 aa16.58■□□□□ 0.24
VRK3-206ENST00000594090 NFASCO94856 1347 aa16.57■□□□□ 0.24
VRK3-206ENST00000594090 HAS3O00219 553 aa16.57■□□□□ 0.24
VRK3-206ENST00000594090 EDIL3O43854 480 aa16.57■□□□□ 0.24
VRK3-206ENST00000594090 LGALS2P05162 132 aa16.57■□□□□ 0.24
VRK3-206ENST00000594090 CIITAP33076 1130 aa16.57■□□□□ 0.24
VRK3-206ENST00000594090 PSEN2P49810 448 aa16.57■□□□□ 0.24
VRK3-206ENST00000594090 CHMP4BP1P59074 171 aa16.57■□□□□ 0.24
VRK3-206ENST00000594090 SETQ01105 290 aaPredicted RBP16.57■□□□□ 0.24
VRK3-206ENST00000594090 MFSD10Q14728 455 aa16.57■□□□□ 0.24
VRK3-206ENST00000594090 PLA2G4DQ86XP0 818 aa16.57■□□□□ 0.24
VRK3-206ENST00000594090 TBCKQ8TEA7 893 aa16.57■□□□□ 0.24
VRK3-206ENST00000594090 LBHD1Q9BQE6 289 aaPredicted RBP16.57■□□□□ 0.24
VRK3-206ENST00000594090 TRPV6Q9H1D0 765 aa16.57■□□□□ 0.24
VRK3-206ENST00000594090 COLQQ9Y215 455 aaPredicted RBP16.57■□□□□ 0.24
VRK3-206ENST00000594090 CD2BP2O95400 341 aaKnown RBP16.56■□□□□ 0.24
VRK3-206ENST00000594090 RAG1P15918 1043 aa16.56■□□□□ 0.24
VRK3-206ENST00000594090 ITGB8P26012 769 aa16.56■□□□□ 0.24
VRK3-206ENST00000594090 PTPN11Q06124 597 aaPredicted RBP16.56■□□□□ 0.24
VRK3-206ENST00000594090 ITGB3BPQ13352 177 aaPredicted RBP16.56■□□□□ 0.24
VRK3-206ENST00000594090 KIAA0753Q2KHM9 967 aa16.56■□□□□ 0.24
VRK3-206ENST00000594090 KRT25Q7Z3Z0 450 aa16.56■□□□□ 0.24
VRK3-206ENST00000594090 SESTD1Q86VW0 696 aa16.56■□□□□ 0.24
VRK3-206ENST00000594090 SDF4Q9BRK5 362 aa16.56■□□□□ 0.24
VRK3-206ENST00000594090 JPH1Q9HDC5 661 aaPredicted RBP16.56■□□□□ 0.24
VRK3-206ENST00000594090 TRMT13Q9NUP7 481 aaKnown RBP16.56■□□□□ 0.24
VRK3-206ENST00000594090 BMP8BP34820 402 aa16.55■□□□□ 0.24
VRK3-206ENST00000594090 USP11P51784 963 aa16.55■□□□□ 0.24
VRK3-206ENST00000594090 FOSBP53539 338 aa16.55■□□□□ 0.24
VRK3-206ENST00000594090 HMGN5P82970 282 aaKnown RBP16.55■□□□□ 0.24
VRK3-206ENST00000594090 NONOQ15233 471 aaKnown RBP eCLIP16.55■□□□□ 0.24
VRK3-206ENST00000594090 OXER1Q8TDS5 423 aa16.55■□□□□ 0.24
VRK3-206ENST00000594090 BADQ92934 168 aa16.55■□□□□ 0.24
VRK3-206ENST00000594090 LENG9Q96B70 501 aa16.55■□□□□ 0.24
VRK3-206ENST00000594090 SLC9A2Q9UBY0 812 aa16.55■□□□□ 0.24
VRK3-206ENST00000594090 CCDC194A0A1B0GVG4 234 aa16.54■□□□□ 0.24
VRK3-206ENST00000594090 H3BRB1 525 aa16.54■□□□□ 0.24
VRK3-206ENST00000594090 IPO5O00410 1097 aaKnown RBP16.54■□□□□ 0.24
VRK3-206ENST00000594090 MMP1P03956 469 aa16.54■□□□□ 0.24
VRK3-206ENST00000594090 KRT2P35908 639 aa16.54■□□□□ 0.24
VRK3-206ENST00000594090 TCF7P36402 384 aaPredicted RBP16.54■□□□□ 0.24
VRK3-206ENST00000594090 PRR16Q569H4 304 aa16.54■□□□□ 0.24
VRK3-206ENST00000594090 UTP14CQ5TAP6 766 aaKnown RBP16.54■□□□□ 0.24
VRK3-206ENST00000594090 TRIM50Q86XT4 487 aa16.54■□□□□ 0.24
VRK3-206ENST00000594090 SEPT1Q8WYJ6 367 aa16.54■□□□□ 0.24
VRK3-206ENST00000594090 ZNF577Q9BSK1 485 aa16.54■□□□□ 0.24
VRK3-206ENST00000594090 TUT1Q9H6E5 874 aaKnown RBP16.54■□□□□ 0.24
VRK3-206ENST00000594090 BRMS1Q9HCU9 246 aa16.54■□□□□ 0.24
VRK3-206ENST00000594090 GSTTP1A0A1W2PQM5 241 aa16.53■□□□□ 0.24
VRK3-206ENST00000594090 TIMP1P01033 207 aa16.53■□□□□ 0.24
VRK3-206ENST00000594090 SUPT20HL2P0C7V6 817 aa16.53■□□□□ 0.24
VRK3-206ENST00000594090 MCM2P49736 904 aa16.53■□□□□ 0.24
VRK3-206ENST00000594090 TRIM29Q14134 588 aa16.53■□□□□ 0.24
VRK3-206ENST00000594090 INF2Q27J81 1249 aa16.53■□□□□ 0.24
VRK3-206ENST00000594090 KRT40Q6A162 431 aa16.53■□□□□ 0.24
VRK3-206ENST00000594090 GDF6Q6KF10 455 aaPredicted RBP16.53■□□□□ 0.24
VRK3-206ENST00000594090 C7orf31Q8N865 590 aa16.53■□□□□ 0.24
VRK3-206ENST00000594090 TMX3Q96JJ7 454 aa16.53■□□□□ 0.24
VRK3-206ENST00000594090 PPP1R12CQ9BZL4 782 aa16.53■□□□□ 0.24
VRK3-206ENST00000594090 UBE2OQ9C0C9 1292 aaKnown RBP16.53■□□□□ 0.24
VRK3-206ENST00000594090 HIPK3Q9H422 1215 aa16.53■□□□□ 0.24
VRK3-206ENST00000594090 HDAC6Q9UBN7 1215 aa16.53■□□□□ 0.24
VRK3-206ENST00000594090 GTF2IRD1Q9UHL9 959 aa16.53■□□□□ 0.24
VRK3-206ENST00000594090 ZNF215Q9UL58 517 aaPredicted RBP16.53■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 77.6 ms