RNA–Protein interactions for RNA: ENST00000591475.5

VPS4B-206, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 1 (best)

Gene VPS4B, Length 2,008 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-206ENST00000591475 HOXA7P31268 230 aaPredicted RBP11.98□□□□□ -0.49
VPS4B-206ENST00000591475 MATR3P43243 847 aaKnown RBP eCLIP11.98□□□□□ -0.49
VPS4B-206ENST00000591475 SLC7A5Q01650 507 aa11.98□□□□□ -0.49
VPS4B-206ENST00000591475 GLE1Q53GS7 698 aaKnown RBP11.98□□□□□ -0.49
VPS4B-206ENST00000591475 HAUS3Q68CZ6 603 aa11.98□□□□□ -0.49
VPS4B-206ENST00000591475 HHIPL2Q6UWX4 724 aa11.98□□□□□ -0.49
VPS4B-206ENST00000591475 UNC13DQ70J99 1090 aa11.98□□□□□ -0.49
VPS4B-206ENST00000591475 RRAGAQ7L523 313 aa11.98□□□□□ -0.49
VPS4B-206ENST00000591475 HPS3Q969F9 1004 aa11.98□□□□□ -0.49
VPS4B-206ENST00000591475 CAVIN3Q969G5 261 aa11.98□□□□□ -0.49
VPS4B-206ENST00000591475 HINFPQ9BQA5 517 aa11.98□□□□□ -0.49
VPS4B-206ENST00000591475 TMEM47Q9BQJ4 181 aa11.98□□□□□ -0.49
VPS4B-206ENST00000591475 MMTAG2Q9BU76 263 aaKnown RBP11.98□□□□□ -0.49
VPS4B-206ENST00000591475 MXD3Q9BW11 206 aa11.98□□□□□ -0.49
VPS4B-206ENST00000591475 EDEM3Q9BZQ6 932 aa11.98□□□□□ -0.49
VPS4B-206ENST00000591475 STK17AQ9UEE5 414 aa11.98□□□□□ -0.49
VPS4B-206ENST00000591475 TSKSQ9UJT2 592 aa11.98□□□□□ -0.49
VPS4B-206ENST00000591475 FER1L6Q2WGJ9 1857 aa11.98□□□□□ -0.49
VPS4B-206ENST00000591475 SMCO2A6NFE2 343 aa11.98□□□□□ -0.49
VPS4B-206ENST00000591475 LRRC53A6NM62 1247 aa11.98□□□□□ -0.49
VPS4B-206ENST00000591475 A6NNZ2 444 aa11.98□□□□□ -0.49
VPS4B-206ENST00000591475 KLRF2D3W0D1 207 aa11.98□□□□□ -0.49
VPS4B-206ENST00000591475 F8W031 263 aaPredicted RBP11.98□□□□□ -0.49
VPS4B-206ENST00000591475 EBAG9O00559 213 aa11.98□□□□□ -0.49
VPS4B-206ENST00000591475 EPHB6O15197 1021 aa11.98□□□□□ -0.49
VPS4B-206ENST00000591475 NKRFO15226 690 aaKnown RBP eCLIP11.98□□□□□ -0.49
VPS4B-206ENST00000591475 PLCG2P16885 1265 aa11.98□□□□□ -0.49
VPS4B-206ENST00000591475 HDLBPQ00341 1268 aaKnown RBP11.98□□□□□ -0.49
VPS4B-206ENST00000591475 LRRC63Q05C16 580 aa11.98□□□□□ -0.49
VPS4B-206ENST00000591475 NNTQ13423 1086 aa11.98□□□□□ -0.49
VPS4B-206ENST00000591475 TUBB8Q3ZCM7 444 aa11.98□□□□□ -0.49
VPS4B-206ENST00000591475 C8orf74Q6P047 294 aa11.98□□□□□ -0.49
VPS4B-206ENST00000591475 PPP1R3FQ6ZSY5 799 aaPredicted RBP11.98□□□□□ -0.49
VPS4B-206ENST00000591475 TADA2BQ86TJ2 420 aa11.98□□□□□ -0.49
VPS4B-206ENST00000591475 KIAA0825Q8IV33 1275 aa11.98□□□□□ -0.49
VPS4B-206ENST00000591475 GUF1Q8N442 669 aaKnown RBP11.98□□□□□ -0.49
VPS4B-206ENST00000591475 RNF10Q8N5U6 811 aaKnown RBP11.98□□□□□ -0.49
VPS4B-206ENST00000591475 IPO4Q8TEX9 1081 aaKnown RBP11.98□□□□□ -0.49
VPS4B-206ENST00000591475 TEKT1Q969V4 418 aa11.98□□□□□ -0.49
VPS4B-206ENST00000591475 STX8Q9UNK0 236 aa11.98□□□□□ -0.49
VPS4B-206ENST00000591475 EIF3HO15372 352 aaKnown RBP eCLIP11.97□□□□□ -0.49
VPS4B-206ENST00000591475 VIL1P09327 827 aaKnown RBP11.97□□□□□ -0.49
VPS4B-206ENST00000591475 CXCR5P32302 372 aa11.97□□□□□ -0.49
VPS4B-206ENST00000591475 BTDP43251 543 aa11.97□□□□□ -0.49
VPS4B-206ENST00000591475 CCT5P48643 541 aa11.97□□□□□ -0.49
VPS4B-206ENST00000591475 GNGT1P63211 74 aa11.97□□□□□ -0.49
VPS4B-206ENST00000591475 PDXDC1Q6P996 788 aa11.97□□□□□ -0.49
VPS4B-206ENST00000591475 CACNA2D4Q7Z3S7 1137 aa11.97□□□□□ -0.49
VPS4B-206ENST00000591475 CDK5RAP3Q96JB5 506 aa11.97□□□□□ -0.49
VPS4B-206ENST00000591475 NOX5Q96PH1 765 aa11.97□□□□□ -0.49
VPS4B-206ENST00000591475 RNF14Q9UBS8 474 aa11.97□□□□□ -0.49
VPS4B-206ENST00000591475 CDK5RAP2Q96SN8 1893 aa11.97□□□□□ -0.49
VPS4B-206ENST00000591475 ARFGEF1Q9Y6D6 1849 aa11.96□□□□□ -0.49
VPS4B-206ENST00000591475 SSU72P8A0A1W2PR75 194 aa11.96□□□□□ -0.49
VPS4B-206ENST00000591475 RAD17O75943 681 aa11.96□□□□□ -0.49
VPS4B-206ENST00000591475 GOLGA8HP0CJ92 632 aa11.96□□□□□ -0.49
VPS4B-206ENST00000591475 SKOR1P84550 965 aa11.96□□□□□ -0.49
VPS4B-206ENST00000591475 GRB10Q13322 594 aa11.96□□□□□ -0.49
VPS4B-206ENST00000591475 SKIDA1Q1XH10 827 aa11.96□□□□□ -0.49
VPS4B-206ENST00000591475 CFAP221Q4G0U5 840 aa11.96□□□□□ -0.49
VPS4B-206ENST00000591475 RSBN1LQ6PCB5 846 aaPredicted RBP11.96□□□□□ -0.49
VPS4B-206ENST00000591475 ARHGAP27Q6ZUM4 889 aa11.96□□□□□ -0.49
VPS4B-206ENST00000591475 IFT20Q8IY31 132 aa11.96□□□□□ -0.49
VPS4B-206ENST00000591475 TSEN2Q8NCE0 465 aaKnown RBP11.96□□□□□ -0.49
VPS4B-206ENST00000591475 BCAS4Q8TDM0 211 aa11.96□□□□□ -0.49
VPS4B-206ENST00000591475 SH3RF3Q8TEJ3 882 aaPredicted RBP11.96□□□□□ -0.49
VPS4B-206ENST00000591475 BAP1Q92560 729 aa11.96□□□□□ -0.49
VPS4B-206ENST00000591475 LARP4BQ92615 738 aaKnown RBP11.96□□□□□ -0.49
VPS4B-206ENST00000591475 PSMB7Q99436 277 aa11.96□□□□□ -0.49
VPS4B-206ENST00000591475 TSG101Q99816 390 aa11.96□□□□□ -0.49
VPS4B-206ENST00000591475 SEC63Q9UGP8 760 aaKnown RBP11.96□□□□□ -0.49
VPS4B-206ENST00000591475 DAGLAQ9Y4D2 1042 aa11.96□□□□□ -0.49
VPS4B-206ENST00000591475 GRIN2DO15399 1336 aa11.96□□□□□ -0.49
VPS4B-206ENST00000591475 SCN9AQ15858 1988 aa11.96□□□□□ -0.5
VPS4B-206ENST00000591475 COL4A5P29400 1685 aa11.96□□□□□ -0.5
VPS4B-206ENST00000591475 MYMKA6NI61 221 aa11.96□□□□□ -0.5
VPS4B-206ENST00000591475 NCK2O43639 380 aa11.96□□□□□ -0.5
VPS4B-206ENST00000591475 CLSTN1O94985 981 aa11.96□□□□□ -0.5
VPS4B-206ENST00000591475 TXKP42681 527 aa11.96□□□□□ -0.5
VPS4B-206ENST00000591475 SCNN1DP51172 638 aa11.96□□□□□ -0.5
VPS4B-206ENST00000591475 RASSF7Q02833 373 aa11.96□□□□□ -0.5
VPS4B-206ENST00000591475 TMEM266Q2M3C6 531 aa11.96□□□□□ -0.5
VPS4B-206ENST00000591475 ASTE1Q2TB18 679 aaPredicted RBP11.96□□□□□ -0.5
VPS4B-206ENST00000591475 KLHDC7AQ5VTJ3 777 aa11.96□□□□□ -0.5
VPS4B-206ENST00000591475 ICE2Q659A1 982 aa11.96□□□□□ -0.5
VPS4B-206ENST00000591475 POTEDQ86YR6 584 aa11.96□□□□□ -0.5
VPS4B-206ENST00000591475 TBCKQ8TEA7 893 aa11.96□□□□□ -0.5
VPS4B-206ENST00000591475 TLR10Q9BXR5 811 aa11.96□□□□□ -0.5
VPS4B-206ENST00000591475 LRRC27Q9C0I9 530 aa11.96□□□□□ -0.5
VPS4B-206ENST00000591475 NUCKS1Q9H1E3 243 aaKnown RBP11.96□□□□□ -0.5
VPS4B-206ENST00000591475 ZNF287Q9HBT7 754 aa11.96□□□□□ -0.5
VPS4B-206ENST00000591475 LUC7LQ9NQ29 371 aaKnown RBP11.96□□□□□ -0.5
VPS4B-206ENST00000591475 RBM12Q9NTZ6 932 aaKnown RBP11.96□□□□□ -0.5
VPS4B-206ENST00000591475 BLOC1S4Q9NUP1 217 aa11.96□□□□□ -0.5
VPS4B-206ENST00000591475 SMARCAL1Q9NZC9 954 aa11.96□□□□□ -0.5
VPS4B-206ENST00000591475 EHD2Q9NZN4 543 aa11.96□□□□□ -0.5
VPS4B-206ENST00000591475 SERPINA10Q9UK55 444 aa11.96□□□□□ -0.5
VPS4B-206ENST00000591475 ATAD5Q96QE3 1844 aa11.96□□□□□ -0.5
VPS4B-206ENST00000591475 CRKP46108 304 aa11.95□□□□□ -0.5
VPS4B-206ENST00000591475 FXR2P51116 673 aaKnown RBP eCLIP11.95□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms