RNA–Protein interactions for RNA: ENST00000589604.5

VPS4B-204, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 1 (best)

Gene VPS4B, Length 1,672 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-204ENST00000589604 PXMP2Q9NR77 195 aa11.82□□□□□ -0.52
VPS4B-204ENST00000589604 ADCY6O43306 1168 aa11.81□□□□□ -0.52
VPS4B-204ENST00000589604 HMGCRP04035 888 aa11.81□□□□□ -0.52
VPS4B-204ENST00000589604 CCND3P30281 292 aaPredicted RBP11.81□□□□□ -0.52
VPS4B-204ENST00000589604 CIITAP33076 1130 aa11.81□□□□□ -0.52
VPS4B-204ENST00000589604 MOXD1Q6UVY6 613 aa11.81□□□□□ -0.52
VPS4B-204ENST00000589604 LRSAM1Q6UWE0 723 aa11.81□□□□□ -0.52
VPS4B-204ENST00000589604 ARMCX2Q7L311 632 aa11.81□□□□□ -0.52
VPS4B-204ENST00000589604 HAS1Q92839 578 aa11.81□□□□□ -0.52
VPS4B-204ENST00000589604 LENG9Q96B70 501 aa11.81□□□□□ -0.52
VPS4B-204ENST00000589604 PDCD2LQ9BRP1 358 aa11.81□□□□□ -0.52
VPS4B-204ENST00000589604 CDKN2AIPQ9NXV6 580 aaPredicted RBP11.81□□□□□ -0.52
VPS4B-204ENST00000589604 KCNH3Q9ULD8 1083 aa11.81□□□□□ -0.52
VPS4B-204ENST00000589604 LETM1O95202 739 aaPredicted RBP11.81□□□□□ -0.52
VPS4B-204ENST00000589604 OR52Z1P0C646 297 aa11.81□□□□□ -0.52
VPS4B-204ENST00000589604 CYBAP13498 195 aa11.81□□□□□ -0.52
VPS4B-204ENST00000589604 PRKAR2AP13861 404 aaKnown RBP11.81□□□□□ -0.52
VPS4B-204ENST00000589604 GCFC2P16383 781 aaKnown RBP11.81□□□□□ -0.52
VPS4B-204ENST00000589604 SYKP43405 635 aa11.81□□□□□ -0.52
VPS4B-204ENST00000589604 PGM5Q15124 567 aa11.81□□□□□ -0.52
VPS4B-204ENST00000589604 LONRF3Q496Y0 759 aa11.81□□□□□ -0.52
VPS4B-204ENST00000589604 SLC9C1Q4G0N8 1177 aa11.81□□□□□ -0.52
VPS4B-204ENST00000589604 EEPD1Q7L9B9 569 aa11.81□□□□□ -0.52
VPS4B-204ENST00000589604 SAMD3Q8N6K7 520 aa11.81□□□□□ -0.52
VPS4B-204ENST00000589604 DNERQ8NFT8 737 aa11.81□□□□□ -0.52
VPS4B-204ENST00000589604 SYMPKQ92797 1274 aaKnown RBP11.81□□□□□ -0.52
VPS4B-204ENST00000589604 ARMC5Q96C12 935 aa11.81□□□□□ -0.52
VPS4B-204ENST00000589604 ZNF333Q96JL9 665 aa11.81□□□□□ -0.52
VPS4B-204ENST00000589604 TIGD1Q96MW7 591 aa11.81□□□□□ -0.52
VPS4B-204ENST00000589604 MAF1Q9H063 256 aa11.81□□□□□ -0.52
VPS4B-204ENST00000589604 UNC93B1Q9H1C4 597 aa11.81□□□□□ -0.52
VPS4B-204ENST00000589604 PDGFCQ9NRA1 345 aa11.81□□□□□ -0.52
VPS4B-204ENST00000589604 MAP3K20Q9NYL2 800 aaKnown RBP11.81□□□□□ -0.52
VPS4B-204ENST00000589604 KIAA1217Q5T5P2 1943 aa11.8□□□□□ -0.52
VPS4B-204ENST00000589604 MKI67P46013 3256 aaKnown RBP11.8□□□□□ -0.52
VPS4B-204ENST00000589604 SYNGAP1Q96PV0 1343 aa11.8□□□□□ -0.52
VPS4B-204ENST00000589604 SPDYE3A6NKU9 549 aa11.8□□□□□ -0.52
VPS4B-204ENST00000589604 FAM86B1E9PN63 330 aa11.8□□□□□ -0.52
VPS4B-204ENST00000589604 RGS20O76081 388 aa11.8□□□□□ -0.52
VPS4B-204ENST00000589604 NR3C2P08235 984 aa11.8□□□□□ -0.52
VPS4B-204ENST00000589604 FAM86B2P0C5J1 330 aa11.8□□□□□ -0.52
VPS4B-204ENST00000589604 ZNF865P0CJ78 1059 aaPredicted RBP11.8□□□□□ -0.52
VPS4B-204ENST00000589604 LONP1P36776 959 aaKnown RBP11.8□□□□□ -0.52
VPS4B-204ENST00000589604 MRPS9P82933 396 aaKnown RBP11.8□□□□□ -0.52
VPS4B-204ENST00000589604 MDM2Q00987 491 aaPredicted RBP11.8□□□□□ -0.52
VPS4B-204ENST00000589604 ARHGEF16Q5VV41 709 aa11.8□□□□□ -0.52
VPS4B-204ENST00000589604 TAPT1Q6NXT6 567 aa11.8□□□□□ -0.52
VPS4B-204ENST00000589604 DTHD1Q6ZMT9 781 aa11.8□□□□□ -0.52
VPS4B-204ENST00000589604 FBXO16Q8IX29 292 aaPredicted RBP11.8□□□□□ -0.52
VPS4B-204ENST00000589604 IGSF22Q8N9C0 903 aa11.8□□□□□ -0.52
VPS4B-204ENST00000589604 NSUN6Q8TEA1 469 aaKnown RBP11.8□□□□□ -0.52
VPS4B-204ENST00000589604 LENG1Q96BZ8 264 aaPredicted RBP11.8□□□□□ -0.52
VPS4B-204ENST00000589604 TNMDQ9H2S6 317 aa11.8□□□□□ -0.52
VPS4B-204ENST00000589604 KCNMB3Q9NPA1 279 aa11.8□□□□□ -0.52
VPS4B-204ENST00000589604 SLC5A4Q9NY91 659 aa11.8□□□□□ -0.52
VPS4B-204ENST00000589604 DDX25Q9UHL0 483 aaKnown RBP11.8□□□□□ -0.52
VPS4B-204ENST00000589604 DNAH12Q6ZR08 3092 aa11.79□□□□□ -0.52
VPS4B-204ENST00000589604 IGLV3-22A0A075B6J6 115 aa11.79□□□□□ -0.52
VPS4B-204ENST00000589604 C11orf97A0A1B0GVM6 126 aaPredicted RBP11.79□□□□□ -0.52
VPS4B-204ENST00000589604 PP2D1A8MPX8 630 aa11.79□□□□□ -0.52
VPS4B-204ENST00000589604 POLR2DO15514 142 aaKnown RBP11.79□□□□□ -0.52
VPS4B-204ENST00000589604 ACTN4O43707 911 aaKnown RBP11.79□□□□□ -0.52
VPS4B-204ENST00000589604 KINO60870 393 aaKnown RBP11.79□□□□□ -0.52
VPS4B-204ENST00000589604 CHRM1P11229 460 aaPredicted RBP11.79□□□□□ -0.52
VPS4B-204ENST00000589604 CDC25AP30304 524 aa11.79□□□□□ -0.52
VPS4B-204ENST00000589604 E2F4Q16254 413 aa11.79□□□□□ -0.52
VPS4B-204ENST00000589604 CALCRLQ16602 461 aa11.79□□□□□ -0.52
VPS4B-204ENST00000589604 Q4G0T1 1027 aa11.79□□□□□ -0.52
VPS4B-204ENST00000589604 VSIG10LQ86VR7 867 aa11.79□□□□□ -0.52
VPS4B-204ENST00000589604 CKAP2LQ8IYA6 745 aa11.79□□□□□ -0.52
VPS4B-204ENST00000589604 CYP2W1Q8TAV3 490 aa11.79□□□□□ -0.52
VPS4B-204ENST00000589604 ETNPPLQ8TBG4 499 aa11.79□□□□□ -0.52
VPS4B-204ENST00000589604 NAP1L4Q99733 375 aaKnown RBP11.79□□□□□ -0.52
VPS4B-204ENST00000589604 MMTAG2Q9BU76 263 aaKnown RBP11.79□□□□□ -0.52
VPS4B-204ENST00000589604 PANK2Q9BZ23 570 aa11.79□□□□□ -0.52
VPS4B-204ENST00000589604 FAM13BQ9NYF5 915 aa11.79□□□□□ -0.52
VPS4B-204ENST00000589604 ADD3Q9UEY8 706 aaKnown RBP11.79□□□□□ -0.52
VPS4B-204ENST00000589604 POTEFA5A3E0 1075 aa11.78□□□□□ -0.52
VPS4B-204ENST00000589604 ASB14A6NK59 587 aa11.78□□□□□ -0.52
VPS4B-204ENST00000589604 MYCLP12524 364 aaPredicted RBP11.78□□□□□ -0.52
VPS4B-204ENST00000589604 CCL5P13501 91 aa11.78□□□□□ -0.52
VPS4B-204ENST00000589604 FXR2P51116 673 aaKnown RBP eCLIP11.78□□□□□ -0.52
VPS4B-204ENST00000589604 ACVR2BQ13705 512 aa11.78□□□□□ -0.52
VPS4B-204ENST00000589604 MFSD14CQ5VZR4 134 aa11.78□□□□□ -0.52
VPS4B-204ENST00000589604 KRBA2Q6ZNG9 492 aa11.78□□□□□ -0.52
VPS4B-204ENST00000589604 ELOA2Q8IYF1 753 aaPredicted RBP11.78□□□□□ -0.52
VPS4B-204ENST00000589604 TRMT44Q8IYL2 757 aaKnown RBP11.78□□□□□ -0.52
VPS4B-204ENST00000589604 MSL3Q8N5Y2 521 aaKnown RBP11.78□□□□□ -0.52
VPS4B-204ENST00000589604 LRRC15Q8TF66 581 aa11.78□□□□□ -0.52
VPS4B-204ENST00000589604 GJA10Q969M2 543 aa11.78□□□□□ -0.52
VPS4B-204ENST00000589604 CCSER1Q9C0I3 900 aa11.78□□□□□ -0.52
VPS4B-204ENST00000589604 SERTAD1Q9UHV2 236 aa11.78□□□□□ -0.52
VPS4B-204ENST00000589604 WDR81Q562E7 1941 aa11.78□□□□□ -0.52
VPS4B-204ENST00000589604 CTAGE5O15320 804 aa11.78□□□□□ -0.52
VPS4B-204ENST00000589604 ARIH2O95376 493 aa11.78□□□□□ -0.52
VPS4B-204ENST00000589604 TECP42680 631 aa11.78□□□□□ -0.52
VPS4B-204ENST00000589604 TXKP42681 527 aa11.78□□□□□ -0.52
VPS4B-204ENST00000589604 IRX5P78411 483 aaPredicted RBP11.78□□□□□ -0.52
VPS4B-204ENST00000589604 PDE4DQ08499 809 aa11.78□□□□□ -0.52
VPS4B-204ENST00000589604 SEMA3FQ13275 785 aa11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms