RNA–Protein interactions for RNA: ENST00000588713.1

LIG3-211, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 467 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-211ENST00000588713 SIL1Q9H173 461 aa4.83□□□□□ -1.64
LIG3-211ENST00000588713 UPF3AQ9H1J1 476 aaKnown RBP4.83□□□□□ -1.64
LIG3-211ENST00000588713 RPAP3Q9H6T3 665 aaPredicted RBP4.83□□□□□ -1.64
LIG3-211ENST00000588713 PARD6AQ9NPB6 346 aa4.83□□□□□ -1.64
LIG3-211ENST00000588713 OGFRQ9NZT2 677 aa4.83□□□□□ -1.64
LIG3-211ENST00000588713 GMEB2Q9UKD1 530 aa4.83□□□□□ -1.64
LIG3-211ENST00000588713 SMG5Q9UPR3 1016 aaKnown RBP4.83□□□□□ -1.64
LIG3-211ENST00000588713 INSL6Q9Y581 213 aa4.83□□□□□ -1.64
LIG3-211ENST00000588713 SMG1Q96Q15 3661 aaKnown RBP4.83□□□□□ -1.64
LIG3-211ENST00000588713 SALL3Q9BXA9 1300 aa4.82□□□□□ -1.64
LIG3-211ENST00000588713 COL11A1P12107 1806 aaPredicted RBP4.82□□□□□ -1.64
LIG3-211ENST00000588713 SMTNL1A8MU46 457 aa4.82□□□□□ -1.64
LIG3-211ENST00000588713 GRM6O15303 877 aa4.82□□□□□ -1.64
LIG3-211ENST00000588713 HMMRO75330 724 aa4.82□□□□□ -1.64
LIG3-211ENST00000588713 CABYRO75952 493 aa4.82□□□□□ -1.64
LIG3-211ENST00000588713 ADCY5O95622 1261 aa4.82□□□□□ -1.64
LIG3-211ENST00000588713 DDX58O95786 925 aaKnown RBP4.82□□□□□ -1.64
LIG3-211ENST00000588713 SNAI1O95863 264 aaPredicted RBP4.82□□□□□ -1.64
LIG3-211ENST00000588713 LDHBP07195 334 aaKnown RBP4.82□□□□□ -1.64
LIG3-211ENST00000588713 CSF1RP07333 972 aa4.82□□□□□ -1.64
LIG3-211ENST00000588713 PLA2G2AP14555 144 aa4.82□□□□□ -1.64
LIG3-211ENST00000588713 NPR3P17342 541 aa4.82□□□□□ -1.64
LIG3-211ENST00000588713 ATF7P17544 494 aaPredicted RBP4.82□□□□□ -1.64
LIG3-211ENST00000588713 VCAM1P19320 739 aa4.82□□□□□ -1.64
LIG3-211ENST00000588713 SDSP20132 328 aa4.82□□□□□ -1.64
LIG3-211ENST00000588713 UBE2HP62256 183 aa4.82□□□□□ -1.64
LIG3-211ENST00000588713 NEXNQ0ZGT2 675 aa4.82□□□□□ -1.64
LIG3-211ENST00000588713 CCDC144BQ3MJ40 725 aa4.82□□□□□ -1.64
LIG3-211ENST00000588713 SLFNL1Q499Z3 407 aa4.82□□□□□ -1.64
LIG3-211ENST00000588713 IL31Q6EBC2 164 aa4.82□□□□□ -1.64
LIG3-211ENST00000588713 LBX2Q6XYB7 198 aa4.82□□□□□ -1.64
LIG3-211ENST00000588713 LIN28BQ6ZN17 250 aaKnown RBP eCLIP4.82□□□□□ -1.64
LIG3-211ENST00000588713 ARHGAP30Q7Z6I6 1101 aaPredicted RBP4.82□□□□□ -1.64
LIG3-211ENST00000588713 ADGRD2Q7Z7M1 963 aa4.82□□□□□ -1.64
LIG3-211ENST00000588713 RBM23Q86U06 439 aaKnown RBP4.82□□□□□ -1.64
LIG3-211ENST00000588713 ABRAQ8N0Z2 381 aa4.82□□□□□ -1.64
LIG3-211ENST00000588713 SIX5Q8N196 739 aa4.82□□□□□ -1.64
LIG3-211ENST00000588713 RNF214Q8ND24 703 aa4.82□□□□□ -1.64
LIG3-211ENST00000588713 GLIS3Q8NEA6 775 aa4.82□□□□□ -1.64
LIG3-211ENST00000588713 KIAA1524Q8TCG1 905 aa4.82□□□□□ -1.64
LIG3-211ENST00000588713 TMX3Q96JJ7 454 aa4.82□□□□□ -1.64
LIG3-211ENST00000588713 SAMD11Q96NU1 681 aa4.82□□□□□ -1.64
LIG3-211ENST00000588713 YME1L1Q96TA2 773 aa4.82□□□□□ -1.64
LIG3-211ENST00000588713 FUCA2Q9BTY2 467 aa4.82□□□□□ -1.64
LIG3-211ENST00000588713 PLA2G12BQ9BX93 195 aa4.82□□□□□ -1.64
LIG3-211ENST00000588713 TANGO6Q9C0B7 1094 aa4.82□□□□□ -1.64
LIG3-211ENST00000588713 TSPYL1Q9H0U9 437 aa4.82□□□□□ -1.64
LIG3-211ENST00000588713 MROH8Q9H579 483 aa4.82□□□□□ -1.64
LIG3-211ENST00000588713 C1orf115Q9H7X2 142 aa4.82□□□□□ -1.64
LIG3-211ENST00000588713 AAASQ9NRG9 546 aa4.82□□□□□ -1.64
LIG3-211ENST00000588713 FBXL21Q9UKT6 434 aa4.82□□□□□ -1.64
LIG3-211ENST00000588713 HELZ2Q9BYK8 2649 aaKnown RBP4.82□□□□□ -1.64
LIG3-211ENST00000588713 NBEAQ8NFP9 2946 aa4.82□□□□□ -1.64
LIG3-211ENST00000588713 MROH5Q6ZUA9 1318 aa4.81□□□□□ -1.64
LIG3-211ENST00000588713 NEURL1BA8MQ27 555 aa4.81□□□□□ -1.64
LIG3-211ENST00000588713 C2CD4DB7Z1M9 353 aa4.81□□□□□ -1.64
LIG3-211ENST00000588713 H7C1W4 665 aa4.81□□□□□ -1.64
LIG3-211ENST00000588713 CTAGE5O15320 804 aa4.81□□□□□ -1.64
LIG3-211ENST00000588713 ZEB2O60315 1214 aa4.81□□□□□ -1.64
LIG3-211ENST00000588713 VAMP4O75379 141 aa4.81□□□□□ -1.64
LIG3-211ENST00000588713 SMPD1P17405 629 aa4.81□□□□□ -1.64
LIG3-211ENST00000588713 MX1P20591 662 aa4.81□□□□□ -1.64
LIG3-211ENST00000588713 TGM1P22735 817 aa4.81□□□□□ -1.64
LIG3-211ENST00000588713 PTGS1P23219 599 aa4.81□□□□□ -1.64
LIG3-211ENST00000588713 BTDP43251 543 aa4.81□□□□□ -1.64
LIG3-211ENST00000588713 NRIP1P48552 1158 aa4.81□□□□□ -1.64
LIG3-211ENST00000588713 RPIAP49247 311 aa4.81□□□□□ -1.64
LIG3-211ENST00000588713 CBX1P83916 185 aa4.81□□□□□ -1.64
LIG3-211ENST00000588713 NCBP1Q09161 790 aaKnown RBP4.81□□□□□ -1.64
LIG3-211ENST00000588713 FUT2Q10981 343 aa4.81□□□□□ -1.64
LIG3-211ENST00000588713 BFSP2Q13515 415 aa4.81□□□□□ -1.64
LIG3-211ENST00000588713 ACVR2BQ13705 512 aa4.81□□□□□ -1.64
LIG3-211ENST00000588713 LPAL2Q16609 132 aa4.81□□□□□ -1.64
LIG3-211ENST00000588713 FSCN1Q16658 493 aaKnown RBP4.81□□□□□ -1.64
LIG3-211ENST00000588713 ATP2B3Q16720 1220 aa4.81□□□□□ -1.64
LIG3-211ENST00000588713 TCTN1Q2MV58 587 aa4.81□□□□□ -1.64
LIG3-211ENST00000588713 CCDC57Q2TAC2 916 aa4.81□□□□□ -1.64
LIG3-211ENST00000588713 COL28A1Q2UY09 1125 aa4.81□□□□□ -1.64
LIG3-211ENST00000588713 TWISTNBQ3B726 338 aaPredicted RBP4.81□□□□□ -1.64
LIG3-211ENST00000588713 ZNF792Q3KQV3 632 aa4.81□□□□□ -1.64
LIG3-211ENST00000588713 CEP85Q6P2H3 762 aa4.81□□□□□ -1.64
LIG3-211ENST00000588713 CNKSR3Q6P9H4 555 aa4.81□□□□□ -1.64
LIG3-211ENST00000588713 CYP4X1Q8N118 509 aa4.81□□□□□ -1.64
LIG3-211ENST00000588713 WDR66Q8TBY9 1149 aa4.81□□□□□ -1.64
LIG3-211ENST00000588713 DDX1Q92499 740 aaKnown RBP4.81□□□□□ -1.64
LIG3-211ENST00000588713 PPP2R3CQ969Q6 453 aa4.81□□□□□ -1.64
LIG3-211ENST00000588713 TRIM34Q9BYJ4 488 aa4.81□□□□□ -1.64
LIG3-211ENST00000588713 ERVK-5Q9HDB9 667 aa4.81□□□□□ -1.64
LIG3-211ENST00000588713 PKD2L1Q9P0L9 805 aa4.81□□□□□ -1.64
LIG3-211ENST00000588713 ZBTB21Q9ULJ3 1066 aa4.81□□□□□ -1.64
LIG3-211ENST00000588713 NOD1Q9Y239 953 aa4.81□□□□□ -1.64
LIG3-211ENST00000588713 FCF1Q9Y324 198 aaKnown RBP4.81□□□□□ -1.64
LIG3-211ENST00000588713 NR2E1Q9Y466 385 aa4.81□□□□□ -1.64
LIG3-211ENST00000588713 ATP6V1DQ9Y5K8 247 aa4.81□□□□□ -1.64
LIG3-211ENST00000588713 RAD50Q92878 1312 aa4.8□□□□□ -1.64
LIG3-211ENST00000588713 C11orf97A0A1B0GVM6 126 aaPredicted RBP4.8□□□□□ -1.64
LIG3-211ENST00000588713 ABHD14A-ACY1A0A1B0GW23 586 aa4.8□□□□□ -1.64
LIG3-211ENST00000588713 SPTLC1O15269 473 aa4.8□□□□□ -1.64
LIG3-211ENST00000588713 UPP2O95045 317 aa4.8□□□□□ -1.64
LIG3-211ENST00000588713 GLP2RO95838 553 aa4.8□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms