RNA–Protein interactions for RNA: ENST00000586457.1

CLIP3-203, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 1 (best)

Gene CLIP3, Length 433 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-203ENST00000586457 VPS54Q9P1Q0 977 aa12.41□□□□□ -0.42
CLIP3-203ENST00000586457 KIAA1217Q5T5P2 1943 aa12.41□□□□□ -0.42
CLIP3-203ENST00000586457 CYP2C9P11712 490 aa12.4□□□□□ -0.42
CLIP3-203ENST00000586457 CSF2RAP15509 400 aa12.4□□□□□ -0.42
CLIP3-203ENST00000586457 FXR1P51114 621 aaKnown RBP eCLIP12.4□□□□□ -0.42
CLIP3-203ENST00000586457 AK2P54819 239 aa12.4□□□□□ -0.42
CLIP3-203ENST00000586457 ARHGAP4P98171 946 aa12.4□□□□□ -0.42
CLIP3-203ENST00000586457 SHHQ15465 462 aa12.4□□□□□ -0.42
CLIP3-203ENST00000586457 NTRK3Q16288 839 aa12.4□□□□□ -0.42
CLIP3-203ENST00000586457 LRIT3Q3SXY7 679 aa12.4□□□□□ -0.42
CLIP3-203ENST00000586457 TYW1BQ6NUM6 668 aa12.4□□□□□ -0.42
CLIP3-203ENST00000586457 PSRC1Q6PGN9 363 aaPredicted RBP12.4□□□□□ -0.42
CLIP3-203ENST00000586457 PPP1R13LQ8WUF5 828 aa12.4□□□□□ -0.42
CLIP3-203ENST00000586457 SEPT1Q8WYJ6 367 aa12.4□□□□□ -0.42
CLIP3-203ENST00000586457 PCDH10Q9P2E7 1040 aa12.4□□□□□ -0.42
CLIP3-203ENST00000586457 UBIAD1Q9Y5Z9 338 aa12.4□□□□□ -0.42
CLIP3-203ENST00000586457 NID2Q14112 1375 aa12.4□□□□□ -0.42
CLIP3-203ENST00000586457 PFKFB2O60825 505 aa12.39□□□□□ -0.43
CLIP3-203ENST00000586457 SEC24BO95487 1268 aa12.39□□□□□ -0.43
CLIP3-203ENST00000586457 FGBP02675 491 aa12.39□□□□□ -0.43
CLIP3-203ENST00000586457 ACTN1P12814 892 aa12.39□□□□□ -0.43
CLIP3-203ENST00000586457 ITGB5P18084 799 aa12.39□□□□□ -0.43
CLIP3-203ENST00000586457 ITGB8P26012 769 aa12.39□□□□□ -0.43
CLIP3-203ENST00000586457 TCF7P36402 384 aaPredicted RBP12.39□□□□□ -0.43
CLIP3-203ENST00000586457 SREBF1P36956 1147 aa12.39□□□□□ -0.43
CLIP3-203ENST00000586457 TRIM29Q14134 588 aa12.39□□□□□ -0.43
CLIP3-203ENST00000586457 PKN1Q16512 942 aa12.39□□□□□ -0.43
CLIP3-203ENST00000586457 GALNT17Q6IS24 598 aa12.39□□□□□ -0.43
CLIP3-203ENST00000586457 PLA2G4DQ86XP0 818 aa12.39□□□□□ -0.43
CLIP3-203ENST00000586457 GPR20Q99678 358 aa12.39□□□□□ -0.43
CLIP3-203ENST00000586457 NOC4LQ9BVI4 516 aaKnown RBP12.39□□□□□ -0.43
CLIP3-203ENST00000586457 FTOQ9C0B1 505 aaKnown RBP eCLIP12.39□□□□□ -0.43
CLIP3-203ENST00000586457 JPH1Q9HDC5 661 aaPredicted RBP12.39□□□□□ -0.43
CLIP3-203ENST00000586457 KCNH7Q9NS40 1196 aa12.39□□□□□ -0.43
CLIP3-203ENST00000586457 HDAC6Q9UBN7 1215 aa12.39□□□□□ -0.43
CLIP3-203ENST00000586457 TPCN1Q9ULQ1 816 aa12.39□□□□□ -0.43
CLIP3-203ENST00000586457 C17orf102A2RUQ5 167 aa12.38□□□□□ -0.43
CLIP3-203ENST00000586457 F2P00734 622 aa12.38□□□□□ -0.43
CLIP3-203ENST00000586457 LGALS2P05162 132 aa12.38□□□□□ -0.43
CLIP3-203ENST00000586457 ACRP10323 421 aa12.38□□□□□ -0.43
CLIP3-203ENST00000586457 SCRN1Q12765 414 aa12.38□□□□□ -0.43
CLIP3-203ENST00000586457 SESTD1Q86VW0 696 aa12.38□□□□□ -0.43
CLIP3-203ENST00000586457 FAM177A1Q8N128 213 aaPredicted RBP12.38□□□□□ -0.43
CLIP3-203ENST00000586457 CAGE1Q8TC20 777 aa12.38□□□□□ -0.43
CLIP3-203ENST00000586457 KAT2BQ92831 832 aa12.38□□□□□ -0.43
CLIP3-203ENST00000586457 ATP6V0A1Q93050 837 aa12.38□□□□□ -0.43
CLIP3-203ENST00000586457 SMARCAD1Q9H4L7 1026 aa12.38□□□□□ -0.43
CLIP3-203ENST00000586457 BRMS1Q9HCU9 246 aa12.38□□□□□ -0.43
CLIP3-203ENST00000586457 IL23AQ9NPF7 189 aa12.38□□□□□ -0.43
CLIP3-203ENST00000586457 ERAP1Q9NZ08 941 aa12.38□□□□□ -0.43
CLIP3-203ENST00000586457 SLC9A2Q9UBY0 812 aa12.38□□□□□ -0.43
CLIP3-203ENST00000586457 GTF2IRD1Q9UHL9 959 aa12.38□□□□□ -0.43
CLIP3-203ENST00000586457 PCDHA4Q9UN74 947 aa12.38□□□□□ -0.43
CLIP3-203ENST00000586457 MYH7BA7E2Y1 1941 aa12.38□□□□□ -0.43
CLIP3-203ENST00000586457 CCDC194A0A1B0GVG4 234 aa12.37□□□□□ -0.43
CLIP3-203ENST00000586457 ZBBXA8MT70 800 aa12.37□□□□□ -0.43
CLIP3-203ENST00000586457 PITPNM1O00562 1244 aa12.37□□□□□ -0.43
CLIP3-203ENST00000586457 BACH1O14867 736 aa12.37□□□□□ -0.43
CLIP3-203ENST00000586457 MARCH6O60337 910 aa12.37□□□□□ -0.43
CLIP3-203ENST00000586457 ATP9AO75110 1047 aa12.37□□□□□ -0.43
CLIP3-203ENST00000586457 KCNA2P16389 499 aa12.37□□□□□ -0.43
CLIP3-203ENST00000586457 RFC2P35250 354 aa12.37□□□□□ -0.43
CLIP3-203ENST00000586457 CLK2P49760 499 aaKnown RBP12.37□□□□□ -0.43
CLIP3-203ENST00000586457 USP11P51784 963 aa12.37□□□□□ -0.43
CLIP3-203ENST00000586457 SETQ01105 290 aaPredicted RBP12.37□□□□□ -0.43
CLIP3-203ENST00000586457 SEMA3FQ13275 785 aa12.37□□□□□ -0.43
CLIP3-203ENST00000586457 PRR16Q569H4 304 aa12.37□□□□□ -0.43
CLIP3-203ENST00000586457 C9orf50Q5SZB4 431 aa12.37□□□□□ -0.43
CLIP3-203ENST00000586457 GDF6Q6KF10 455 aaPredicted RBP12.37□□□□□ -0.43
CLIP3-203ENST00000586457 ZNF365Q70YC5 407 aa12.37□□□□□ -0.43
CLIP3-203ENST00000586457 NIPA1Q7RTP0 329 aa12.37□□□□□ -0.43
CLIP3-203ENST00000586457 DEFB128Q7Z7B8 93 aa12.37□□□□□ -0.43
CLIP3-203ENST00000586457 BLIDQ8IZY5 108 aa12.37□□□□□ -0.43
CLIP3-203ENST00000586457 NECAB1Q8N987 351 aa12.37□□□□□ -0.43
CLIP3-203ENST00000586457 ZNF577Q9BSK1 485 aa12.37□□□□□ -0.43
CLIP3-203ENST00000586457 C16orf70Q9BSU1 422 aa12.37□□□□□ -0.43
CLIP3-203ENST00000586457 BCAS3Q9H6U6 928 aa12.37□□□□□ -0.43
CLIP3-203ENST00000586457 AGO4Q9HCK5 861 aaKnown RBP12.37□□□□□ -0.43
CLIP3-203ENST00000586457 TBC1D22BQ9NU19 505 aa12.37□□□□□ -0.43
CLIP3-203ENST00000586457 ORC3Q9UBD5 711 aaPredicted RBP12.37□□□□□ -0.43
CLIP3-203ENST00000586457 LIMCH1Q9UPQ0 1083 aa12.37□□□□□ -0.43
CLIP3-203ENST00000586457 SAMM50Q9Y512 469 aa12.37□□□□□ -0.43
CLIP3-203ENST00000586457 DDX39AO00148 427 aaKnown RBP12.36□□□□□ -0.43
CLIP3-203ENST00000586457 IPO5O00410 1097 aaKnown RBP12.36□□□□□ -0.43
CLIP3-203ENST00000586457 MEIS1O00470 390 aa12.36□□□□□ -0.43
CLIP3-203ENST00000586457 PARNO95453 639 aaKnown RBP12.36□□□□□ -0.43
CLIP3-203ENST00000586457 PFKMP08237 780 aa12.36□□□□□ -0.43
CLIP3-203ENST00000586457 CYP3A4P08684 503 aa12.36□□□□□ -0.43
CLIP3-203ENST00000586457 SMIM10L2AP0DMW4 78 aa12.36□□□□□ -0.43
CLIP3-203ENST00000586457 SMIM10L2BP0DMW5 78 aa12.36□□□□□ -0.43
CLIP3-203ENST00000586457 ARP10275 920 aa12.36□□□□□ -0.43
CLIP3-203ENST00000586457 HOXD8P13378 290 aaPredicted RBP12.36□□□□□ -0.43
CLIP3-203ENST00000586457 THPOP40225 353 aa12.36□□□□□ -0.43
CLIP3-203ENST00000586457 PTK7Q13308 1070 aa12.36□□□□□ -0.43
CLIP3-203ENST00000586457 FAM160B1Q5W0V3 765 aa12.36□□□□□ -0.43
CLIP3-203ENST00000586457 RSPH3Q86UC2 560 aa12.36□□□□□ -0.43
CLIP3-203ENST00000586457 CYP2W1Q8TAV3 490 aa12.36□□□□□ -0.43
CLIP3-203ENST00000586457 RASGRP4Q8TDF6 673 aa12.36□□□□□ -0.43
CLIP3-203ENST00000586457 AFAP1L1Q8TED9 768 aa12.36□□□□□ -0.43
CLIP3-203ENST00000586457 SCLYQ96I15 445 aa12.36□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms