RNA–Protein interactions for RNA: ENST00000581570.5

SS18-219, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 571 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-219ENST00000581570 GRM6O15303 877 aa14.85□□□□□ -0.03
SS18-219ENST00000581570 DHX16O60231 1041 aaKnown RBP14.85□□□□□ -0.03
SS18-219ENST00000581570 CAND2O75155 1236 aa14.85□□□□□ -0.03
SS18-219ENST00000581570 RGS20O76081 388 aa14.85□□□□□ -0.03
SS18-219ENST00000581570 SMIM10L2AP0DMW4 78 aa14.85□□□□□ -0.03
SS18-219ENST00000581570 SMIM10L2BP0DMW5 78 aa14.85□□□□□ -0.03
SS18-219ENST00000581570 HOXC8P31273 242 aa14.85□□□□□ -0.03
SS18-219ENST00000581570 BMPR1AP36894 532 aa14.85□□□□□ -0.03
SS18-219ENST00000581570 PTPN5P54829 565 aa14.85□□□□□ -0.03
SS18-219ENST00000581570 SMAD4Q13485 552 aaKnown RBP14.85□□□□□ -0.03
SS18-219ENST00000581570 BMP8AQ7Z5Y6 402 aa14.85□□□□□ -0.03
SS18-219ENST00000581570 PNMA1Q8ND90 353 aa14.85□□□□□ -0.03
SS18-219ENST00000581570 ESR2Q92731 530 aa14.85□□□□□ -0.03
SS18-219ENST00000581570 APBB2Q92870 758 aa14.85□□□□□ -0.03
SS18-219ENST00000581570 FAM227BQ96M60 508 aa14.85□□□□□ -0.03
SS18-219ENST00000581570 PDCD2LQ9BRP1 358 aa14.85□□□□□ -0.03
SS18-219ENST00000581570 C11orf84Q9BUA3 381 aaPredicted RBP14.85□□□□□ -0.03
SS18-219ENST00000581570 RNPEPQ9H4A4 650 aa14.85□□□□□ -0.03
SS18-219ENST00000581570 TUT1Q9H6E5 874 aaKnown RBP14.85□□□□□ -0.03
SS18-219ENST00000581570 MLXIPQ9HAP2 919 aa14.85□□□□□ -0.03
SS18-219ENST00000581570 A0A0D9SFI3 127 aa14.84□□□□□ -0.03
SS18-219ENST00000581570 ST18O60284 1047 aa14.84□□□□□ -0.03
SS18-219ENST00000581570 TGFB3P10600 412 aa14.84□□□□□ -0.03
SS18-219ENST00000581570 HSD17B4P51659 736 aa14.84□□□□□ -0.03
SS18-219ENST00000581570 SP2Q02086 613 aa14.84□□□□□ -0.03
SS18-219ENST00000581570 ASPRV1Q53RT3 343 aa14.84□□□□□ -0.03
SS18-219ENST00000581570 IER5LQ5T953 404 aa14.84□□□□□ -0.03
SS18-219ENST00000581570 TBC1D10CQ8IV04 446 aa14.84□□□□□ -0.03
SS18-219ENST00000581570 PBXIP1Q96AQ6 731 aa14.84□□□□□ -0.03
SS18-219ENST00000581570 PRRX2Q99811 253 aa14.84□□□□□ -0.03
SS18-219ENST00000581570 RNF41Q9H4P4 317 aaPredicted RBP14.84□□□□□ -0.03
SS18-219ENST00000581570 KAT14Q9H8E8 782 aa14.84□□□□□ -0.03
SS18-219ENST00000581570 JMJD4Q9H9V9 463 aa14.84□□□□□ -0.03
SS18-219ENST00000581570 CD207Q9UJ71 328 aa14.84□□□□□ -0.03
SS18-219ENST00000581570 RWDD3Q9Y3V2 267 aa14.84□□□□□ -0.03
SS18-219ENST00000581570 ZMYM6O95789 1325 aa14.84□□□□□ -0.03
SS18-219ENST00000581570 WDFY4Q6ZS81 3184 aa14.83□□□□□ -0.04
SS18-219ENST00000581570 TMEM221A6NGB7 291 aa14.83□□□□□ -0.04
SS18-219ENST00000581570 M0R296 226 aa14.83□□□□□ -0.04
SS18-219ENST00000581570 TBX10O75333 385 aa14.83□□□□□ -0.04
SS18-219ENST00000581570 GNAT1P11488 350 aa14.83□□□□□ -0.04
SS18-219ENST00000581570 UBA1P22314 1058 aaKnown RBP14.83□□□□□ -0.04
SS18-219ENST00000581570 GTF2F1P35269 517 aaKnown RBP eCLIP14.83□□□□□ -0.04
SS18-219ENST00000581570 PKN1Q16512 942 aa14.83□□□□□ -0.04
SS18-219ENST00000581570 CCDC178Q5BJE1 867 aa14.83□□□□□ -0.04
SS18-219ENST00000581570 TRIM67Q6ZTA4 783 aa14.83□□□□□ -0.04
SS18-219ENST00000581570 VSIG10LQ86VR7 867 aa14.83□□□□□ -0.04
SS18-219ENST00000581570 COL4A6Q14031 1691 aa14.83□□□□□ -0.04
SS18-219ENST00000581570 MICAL3Q7RTP6 2002 aa14.83□□□□□ -0.04
SS18-219ENST00000581570 LINC01565O15544 149 aa14.82□□□□□ -0.04
SS18-219ENST00000581570 CSPG5O95196 566 aa14.82□□□□□ -0.04
SS18-219ENST00000581570 LGALS2P05162 132 aa14.82□□□□□ -0.04
SS18-219ENST00000581570 PARP1P09874 1014 aaKnown RBP14.82□□□□□ -0.04
SS18-219ENST00000581570 LINC00271P0C7V0 271 aa14.82□□□□□ -0.04
SS18-219ENST00000581570 ADAM15Q13444 863 aa14.82□□□□□ -0.04
SS18-219ENST00000581570 PGM5Q15124 567 aa14.82□□□□□ -0.04
SS18-219ENST00000581570 STOX1Q6ZVD7 989 aa14.82□□□□□ -0.04
SS18-219ENST00000581570 ZNF589Q86UQ0 364 aaPredicted RBP14.82□□□□□ -0.04
SS18-219ENST00000581570 IQCA1Q86XH1 822 aa14.82□□□□□ -0.04
SS18-219ENST00000581570 SUGP1Q8IWZ8 645 aaKnown RBP14.82□□□□□ -0.04
SS18-219ENST00000581570 ZFP91Q96JP5 570 aaPredicted RBP14.82□□□□□ -0.04
SS18-219ENST00000581570 AMNQ9BXJ7 453 aa14.82□□□□□ -0.04
SS18-219ENST00000581570 SETD4Q9NVD3 440 aa14.82□□□□□ -0.04
SS18-219ENST00000581570 MAP3K20Q9NYL2 800 aaKnown RBP14.82□□□□□ -0.04
SS18-219ENST00000581570 NEDD4P46934 1319 aa14.82□□□□□ -0.04
SS18-219ENST00000581570 NOP56O00567 594 aaKnown RBP14.81□□□□□ -0.04
SS18-219ENST00000581570 OPLAHO14841 1288 aa14.81□□□□□ -0.04
SS18-219ENST00000581570 NDUFV1P49821 464 aa14.81□□□□□ -0.04
SS18-219ENST00000581570 GHRHRQ02643 423 aa14.81□□□□□ -0.04
SS18-219ENST00000581570 FAM26DQ5JW98 314 aa14.81□□□□□ -0.04
SS18-219ENST00000581570 IL31RAQ8NI17 732 aa14.81□□□□□ -0.04
SS18-219ENST00000581570 GPKOWQ92917 476 aaPredicted RBP eCLIP14.81□□□□□ -0.04
SS18-219ENST00000581570 CLP1Q92989 425 aaKnown RBP14.81□□□□□ -0.04
SS18-219ENST00000581570 USP26Q9BXU7 913 aa14.81□□□□□ -0.04
SS18-219ENST00000581570 BCAS3Q9H6U6 928 aa14.81□□□□□ -0.04
SS18-219ENST00000581570 ZBTB47Q9UFB7 747 aaPredicted RBP14.81□□□□□ -0.04
SS18-219ENST00000581570 CCDC171Q6TFL3 1326 aa14.81□□□□□ -0.04
SS18-219ENST00000581570 ADGRA3Q8IWK6 1321 aa14.81□□□□□ -0.04
SS18-219ENST00000581570 SALL3Q9BXA9 1300 aa14.81□□□□□ -0.04
SS18-219ENST00000581570 KIAA1217Q5T5P2 1943 aa14.8□□□□□ -0.04
SS18-219ENST00000581570 TRIM6-TRIM34B2RNG4 842 aa14.8□□□□□ -0.04
SS18-219ENST00000581570 ZNF213O14771 459 aa14.8□□□□□ -0.04
SS18-219ENST00000581570 KDM4AO75164 1064 aa14.8□□□□□ -0.04
SS18-219ENST00000581570 MMP1P03956 469 aa14.8□□□□□ -0.04
SS18-219ENST00000581570 CCND2P30279 289 aa14.8□□□□□ -0.04
SS18-219ENST00000581570 HOXA13P31271 388 aaPredicted RBP14.8□□□□□ -0.04
SS18-219ENST00000581570 NT5C2P49902 561 aa14.8□□□□□ -0.04
SS18-219ENST00000581570 ZXDAP98168 799 aa14.8□□□□□ -0.04
SS18-219ENST00000581570 TCF15Q12870 199 aa14.8□□□□□ -0.04
SS18-219ENST00000581570 NMIQ13287 307 aaPredicted RBP14.8□□□□□ -0.04
SS18-219ENST00000581570 BTG3Q14201 252 aaPredicted RBP14.8□□□□□ -0.04
SS18-219ENST00000581570 SAMD3Q8N6K7 520 aa14.8□□□□□ -0.04
SS18-219ENST00000581570 PPP2R3CQ969Q6 453 aa14.8□□□□□ -0.04
SS18-219ENST00000581570 MSLNLQ96KJ4 702 aa14.8□□□□□ -0.04
SS18-219ENST00000581570 PLVAPQ9BX97 442 aa14.8□□□□□ -0.04
SS18-219ENST00000581570 ALG13Q9NP73 1137 aaKnown RBP14.8□□□□□ -0.04
SS18-219ENST00000581570 PCDHB15Q9Y5E8 787 aa14.8□□□□□ -0.04
SS18-219ENST00000581570 ENPP3O14638 875 aa14.79□□□□□ -0.04
SS18-219ENST00000581570 EYA4O95677 639 aa14.79□□□□□ -0.04
SS18-219ENST00000581570 CHRNA1P02708 482 aa14.79□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms