RNA–Protein interactions for RNA: ENST00000580003.1

SS18-214, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 609 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-214ENST00000580003 JAG1P78504 1218 aa9.37□□□□□ -0.91
SS18-214ENST00000580003 CRY1Q16526 586 aa9.37□□□□□ -0.91
SS18-214ENST00000580003 HABP4Q5JVS0 413 aaKnown RBP9.37□□□□□ -0.91
SS18-214ENST00000580003 EP400NLQ6ZTU2 488 aa9.37□□□□□ -0.91
SS18-214ENST00000580003 SYNPOQ8N3V7 929 aa9.37□□□□□ -0.91
SS18-214ENST00000580003 DACT3Q96B18 629 aaPredicted RBP9.37□□□□□ -0.91
SS18-214ENST00000580003 DNM2P50570 870 aa9.36□□□□□ -0.91
SS18-214ENST00000580003 TUSC3Q13454 348 aa9.36□□□□□ -0.91
SS18-214ENST00000580003 C1QL4Q86Z23 238 aa9.36□□□□□ -0.91
SS18-214ENST00000580003 FAM26EQ8N5C1 309 aa9.36□□□□□ -0.91
SS18-214ENST00000580003 APPBP2Q92624 585 aa9.36□□□□□ -0.91
SS18-214ENST00000580003 MRPL42Q9Y6G3 142 aaKnown RBP9.36□□□□□ -0.91
SS18-214ENST00000580003 CCDC66A2RUB6 948 aa9.35□□□□□ -0.91
SS18-214ENST00000580003 PPP1R12AO14974 1030 aaPredicted RBP9.35□□□□□ -0.91
SS18-214ENST00000580003 ZSCAN22P10073 491 aaPredicted RBP9.35□□□□□ -0.91
SS18-214ENST00000580003 TCEA2Q15560 299 aa9.35□□□□□ -0.91
SS18-214ENST00000580003 GPR19Q15760 415 aa9.35□□□□□ -0.91
SS18-214ENST00000580003 KRTAP19-4Q3LI73 84 aa9.35□□□□□ -0.91
SS18-214ENST00000580003 ARHGAP36Q6ZRI8 547 aa9.35□□□□□ -0.91
SS18-214ENST00000580003 SCLYQ96I15 445 aa9.35□□□□□ -0.91
SS18-214ENST00000580003 TRIM39Q9HCM9 518 aa9.35□□□□□ -0.91
SS18-214ENST00000580003 PLA2G1BP04054 148 aaKnown RBP9.34□□□□□ -0.91
SS18-214ENST00000580003 KRT15P19012 456 aa9.34□□□□□ -0.91
SS18-214ENST00000580003 GRIN1Q05586 938 aa9.34□□□□□ -0.91
SS18-214ENST00000580003 CR1LQ2VPA4 569 aa9.34□□□□□ -0.91
SS18-214ENST00000580003 KCTD1Q719H9 257 aa9.34□□□□□ -0.91
SS18-214ENST00000580003 FGD2Q7Z6J4 655 aa9.34□□□□□ -0.91
SS18-214ENST00000580003 PNPLA5Q7Z6Z6 429 aaPredicted RBP9.34□□□□□ -0.91
SS18-214ENST00000580003 RBM12BQ8IXT5 1001 aaKnown RBP9.34□□□□□ -0.91
SS18-214ENST00000580003 NLGN4XQ8N0W4 816 aa9.34□□□□□ -0.91
SS18-214ENST00000580003 TTLL11Q8NHH1 800 aa9.34□□□□□ -0.91
SS18-214ENST00000580003 FNIP1Q8TF40 1166 aa9.34□□□□□ -0.91
SS18-214ENST00000580003 CLEC4DQ8WXI8 215 aa9.34□□□□□ -0.91
SS18-214ENST00000580003 FANCLQ9NW38 375 aa9.34□□□□□ -0.91
SS18-214ENST00000580003 TCRBV16S1A1N1A0A5B0 115 aa9.33□□□□□ -0.92
SS18-214ENST00000580003 PDE6AP16499 860 aa9.33□□□□□ -0.92
SS18-214ENST00000580003 CAP1Q01518 475 aa9.33□□□□□ -0.92
SS18-214ENST00000580003 TEPPQ6URK8 271 aa9.33□□□□□ -0.92
SS18-214ENST00000580003 C16orf86Q6ZW13 317 aa9.33□□□□□ -0.92
SS18-214ENST00000580003 JAZF1Q86VZ6 243 aa9.33□□□□□ -0.92
SS18-214ENST00000580003 OSTM1Q86WC4 334 aa9.33□□□□□ -0.92
SS18-214ENST00000580003 SIAH1Q8IUQ4 282 aa9.33□□□□□ -0.92
SS18-214ENST00000580003 ZBTB8AQ96BR9 441 aa9.33□□□□□ -0.92
SS18-214ENST00000580003 CLUHP3Q96NS8 147 aa9.33□□□□□ -0.92
SS18-214ENST00000580003 NOX5Q96PH1 765 aa9.33□□□□□ -0.92
SS18-214ENST00000580003 CD244Q9BZW8 370 aa9.33□□□□□ -0.92
SS18-214ENST00000580003 CBLCQ9ULV8 474 aa9.33□□□□□ -0.92
SS18-214ENST00000580003 SMARCA5O60264 1052 aaPredicted RBP9.32□□□□□ -0.92
SS18-214ENST00000580003 CDC45O75419 566 aa9.32□□□□□ -0.92
SS18-214ENST00000580003 LTFP02788 710 aa9.32□□□□□ -0.92
SS18-214ENST00000580003 HTRA3P83110 453 aa9.32□□□□□ -0.92
SS18-214ENST00000580003 FZD5Q13467 585 aa9.32□□□□□ -0.92
SS18-214ENST00000580003 GORASP1Q9BQQ3 440 aa9.32□□□□□ -0.92
SS18-214ENST00000580003 CELF4Q9BZC1 486 aaKnown RBP9.32□□□□□ -0.92
SS18-214ENST00000580003 SRPK3Q9UPE1 567 aa9.32□□□□□ -0.92
SS18-214ENST00000580003 COQ6Q9Y2Z9 468 aa9.32□□□□□ -0.92
SS18-214ENST00000580003 B4E1Z4 1266 aa9.31□□□□□ -0.92
SS18-214ENST00000580003 NPTXRO95502 500 aa9.31□□□□□ -0.92
SS18-214ENST00000580003 LRG1P02750 347 aa9.31□□□□□ -0.92
SS18-214ENST00000580003 EPHA5P54756 1037 aa9.31□□□□□ -0.92
SS18-214ENST00000580003 PAN2Q504Q3 1202 aaKnown RBP9.31□□□□□ -0.92
SS18-214ENST00000580003 CISD2Q8N5K1 135 aaKnown RBP9.31□□□□□ -0.92
SS18-214ENST00000580003 TTLL6Q8N841 843 aa9.31□□□□□ -0.92
SS18-214ENST00000580003 KYQ8NBH2 561 aa9.31□□□□□ -0.92
SS18-214ENST00000580003 C11orf84Q9BUA3 381 aaPredicted RBP9.31□□□□□ -0.92
SS18-214ENST00000580003 TCRBV5S4A2TA0A5A2 114 aa9.3□□□□□ -0.92
SS18-214ENST00000580003 OPA1O60313 960 aa9.3□□□□□ -0.92
SS18-214ENST00000580003 RFPL3O75679 317 aa9.3□□□□□ -0.92
SS18-214ENST00000580003 CKMP06732 381 aa9.3□□□□□ -0.92
SS18-214ENST00000580003 JAM2P57087 298 aa9.3□□□□□ -0.92
SS18-214ENST00000580003 PABPC4Q13310 644 aaKnown RBP eCLIP9.3□□□□□ -0.92
SS18-214ENST00000580003 SMAD4Q13485 552 aaKnown RBP9.3□□□□□ -0.92
SS18-214ENST00000580003 VMACQ2NL98 169 aa9.3□□□□□ -0.92
SS18-214ENST00000580003 TTLL7Q6ZT98 887 aa9.3□□□□□ -0.92
SS18-214ENST00000580003 DDX53Q86TM3 631 aaKnown RBP9.3□□□□□ -0.92
SS18-214ENST00000580003 PTRH1Q86Y79 214 aaKnown RBP9.3□□□□□ -0.92
SS18-214ENST00000580003 LINC00482Q8N8I6 264 aa9.3□□□□□ -0.92
SS18-214ENST00000580003 LINC01356Q8N9X3 169 aa9.3□□□□□ -0.92
SS18-214ENST00000580003 SH3RF2Q8TEC5 729 aa9.3□□□□□ -0.92
SS18-214ENST00000580003 SYT3Q9BQG1 590 aa9.3□□□□□ -0.92
SS18-214ENST00000580003 TELO2Q9Y4R8 837 aa9.3□□□□□ -0.92
SS18-214ENST00000580003 ATP23Q9Y6H3 246 aa9.3□□□□□ -0.92
SS18-214ENST00000580003 ZNF561-AS1K7EIQ3 104 aa9.29□□□□□ -0.92
SS18-214ENST00000580003 ASLP04424 464 aa9.29□□□□□ -0.92
SS18-214ENST00000580003 AMY2AP04746 511 aa9.29□□□□□ -0.92
SS18-214ENST00000580003 FAHP16930 419 aa9.29□□□□□ -0.92
SS18-214ENST00000580003 AMY2BP19961 511 aa9.29□□□□□ -0.92
SS18-214ENST00000580003 IGFALSP35858 605 aa9.29□□□□□ -0.92
SS18-214ENST00000580003 ITGA1P56199 1179 aa9.29□□□□□ -0.92
SS18-214ENST00000580003 LACTBP83111 547 aaPredicted RBP9.29□□□□□ -0.92
SS18-214ENST00000580003 FIGNQ5HY92 759 aa9.29□□□□□ -0.92
SS18-214ENST00000580003 BTBD8Q5XKL5 378 aa9.29□□□□□ -0.92
SS18-214ENST00000580003 LCNL1Q6ZST4 164 aa9.29□□□□□ -0.92
SS18-214ENST00000580003 SAPCD2Q86UD0 394 aa9.29□□□□□ -0.92
SS18-214ENST00000580003 STK32CQ86UX6 486 aa9.29□□□□□ -0.92
SS18-214ENST00000580003 IGSF22Q8N9C0 903 aa9.29□□□□□ -0.92
SS18-214ENST00000580003 PDGFDQ9GZP0 370 aaPredicted RBP9.29□□□□□ -0.92
SS18-214ENST00000580003 HSPBP1Q9NZL4 362 aa9.29□□□□□ -0.92
SS18-214ENST00000580003 MAN2B1O00754 1011 aa9.28□□□□□ -0.92
SS18-214ENST00000580003 FFAR3O14843 346 aa9.28□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms