RNA–Protein interactions for RNA: ENST00000576241.1

CCDC40-216, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 714 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-216ENST00000576241 HOXD8P13378 290 aaPredicted RBP15.79■□□□□ 0.12
CCDC40-216ENST00000576241 PTK7Q13308 1070 aa15.79■□□□□ 0.12
CCDC40-216ENST00000576241 CREB3L3Q68CJ9 461 aa15.79■□□□□ 0.12
CCDC40-216ENST00000576241 PHOSPHO2Q8TCD6 241 aa15.79■□□□□ 0.12
CCDC40-216ENST00000576241 ZFP91Q96JP5 570 aaPredicted RBP15.79■□□□□ 0.12
CCDC40-216ENST00000576241 CTAGE1Q96RT6 745 aa15.79■□□□□ 0.12
CCDC40-216ENST00000576241 KIF28PB7ZC32 967 aa15.78■□□□□ 0.12
CCDC40-216ENST00000576241 NOP56O00567 594 aaKnown RBP15.78■□□□□ 0.12
CCDC40-216ENST00000576241 CKBP12277 381 aa15.78■□□□□ 0.12
CCDC40-216ENST00000576241 KCNJ6P48051 423 aa15.78■□□□□ 0.12
CCDC40-216ENST00000576241 SP2Q02086 613 aa15.78■□□□□ 0.12
CCDC40-216ENST00000576241 RBL2Q08999 1139 aa15.78■□□□□ 0.12
CCDC40-216ENST00000576241 CSPP1Q1MSJ5 1256 aa15.78■□□□□ 0.12
CCDC40-216ENST00000576241 BMP2KLQ5H9B9 411 aa15.78■□□□□ 0.12
CCDC40-216ENST00000576241 RNF20Q5VTR2 975 aa15.78■□□□□ 0.12
CCDC40-216ENST00000576241 CENPQQ7L2Z9 268 aaPredicted RBP15.78■□□□□ 0.12
CCDC40-216ENST00000576241 DHX38Q92620 1227 aaKnown RBP15.78■□□□□ 0.12
CCDC40-216ENST00000576241 INPP4AQ96PE3 977 aaPredicted RBP15.78■□□□□ 0.12
CCDC40-216ENST00000576241 SLC12A7Q9Y666 1083 aa15.78■□□□□ 0.12
CCDC40-216ENST00000576241 FIBPO43427 364 aa15.77■□□□□ 0.12
CCDC40-216ENST00000576241 PLEKHA8P1O95397 391 aa15.77■□□□□ 0.12
CCDC40-216ENST00000576241 CA3P07451 260 aa15.77■□□□□ 0.12
CCDC40-216ENST00000576241 LIFRP42702 1097 aa15.77■□□□□ 0.12
CCDC40-216ENST00000576241 MRPS9P82933 396 aaKnown RBP15.77■□□□□ 0.12
CCDC40-216ENST00000576241 NEDD9Q14511 834 aa15.77■□□□□ 0.12
CCDC40-216ENST00000576241 NECTIN1Q15223 517 aa15.77■□□□□ 0.12
CCDC40-216ENST00000576241 XRRA1Q6P2D8 792 aa15.77■□□□□ 0.12
CCDC40-216ENST00000576241 HERC6Q8IVU3 1022 aa15.77■□□□□ 0.12
CCDC40-216ENST00000576241 GJD3Q8N144 294 aa15.77■□□□□ 0.12
CCDC40-216ENST00000576241 GPKOWQ92917 476 aaPredicted RBP eCLIP15.77■□□□□ 0.12
CCDC40-216ENST00000576241 KCNH6Q9H252 994 aa15.77■□□□□ 0.12
CCDC40-216ENST00000576241 TANC1Q9C0D5 1861 aa15.77■□□□□ 0.11
CCDC40-216ENST00000576241 SPATA31C2B4DYI2 1134 aa15.76■□□□□ 0.11
CCDC40-216ENST00000576241 H3BRB1 525 aa15.76■□□□□ 0.11
CCDC40-216ENST00000576241 PIK3CDO00329 1044 aa15.76■□□□□ 0.11
CCDC40-216ENST00000576241 ALADP13716 330 aa15.76■□□□□ 0.11
CCDC40-216ENST00000576241 RXRAP19793 462 aa15.76■□□□□ 0.11
CCDC40-216ENST00000576241 ICAM3P32942 547 aa15.76■□□□□ 0.11
CCDC40-216ENST00000576241 PCNX4Q63HM2 1172 aa15.76■□□□□ 0.11
CCDC40-216ENST00000576241 CNKSR3Q6P9H4 555 aa15.76■□□□□ 0.11
CCDC40-216ENST00000576241 USP17L6PQ6QN14 398 aa15.76■□□□□ 0.11
CCDC40-216ENST00000576241 METTL7BQ6UX53 244 aa15.76■□□□□ 0.11
CCDC40-216ENST00000576241 SYNE3Q6ZMZ3 975 aa15.76■□□□□ 0.11
CCDC40-216ENST00000576241 SRBD1Q8N5C6 995 aaKnown RBP15.76■□□□□ 0.11
CCDC40-216ENST00000576241 C16orf70Q9BSU1 422 aa15.76■□□□□ 0.11
CCDC40-216ENST00000576241 TUT1Q9H6E5 874 aaKnown RBP15.76■□□□□ 0.11
CCDC40-216ENST00000576241 RTEL1Q9NZ71 1219 aa15.76■□□□□ 0.11
CCDC40-216ENST00000576241 C17orf102A2RUQ5 167 aa15.75■□□□□ 0.11
CCDC40-216ENST00000576241 LGALS2P05162 132 aa15.75■□□□□ 0.11
CCDC40-216ENST00000576241 CYFIP1Q7L576 1253 aa15.75■□□□□ 0.11
CCDC40-216ENST00000576241 NLRX1Q86UT6 975 aa15.75■□□□□ 0.11
CCDC40-216ENST00000576241 CMTR1Q8N1G2 835 aaKnown RBP15.75■□□□□ 0.11
CCDC40-216ENST00000576241 ARNTL2Q8WYA1 636 aa15.75■□□□□ 0.11
CCDC40-216ENST00000576241 PHOX2BQ99453 314 aa15.75■□□□□ 0.11
CCDC40-216ENST00000576241 USP26Q9BXU7 913 aa15.75■□□□□ 0.11
CCDC40-216ENST00000576241 LRRC2Q9BYS8 371 aa15.75■□□□□ 0.11
CCDC40-216ENST00000576241 PSTPIP2Q9H939 334 aa15.75■□□□□ 0.11
CCDC40-216ENST00000576241 ZNF318Q5VUA4 2279 aa15.75■□□□□ 0.11
CCDC40-216ENST00000576241 SCN5AQ14524 2016 aa15.74■□□□□ 0.11
CCDC40-216ENST00000576241 MEIS2O14770 477 aa15.74■□□□□ 0.11
CCDC40-216ENST00000576241 NBNO60934 754 aa15.74■□□□□ 0.11
CCDC40-216ENST00000576241 EFCAB14O75071 495 aa15.74■□□□□ 0.11
CCDC40-216ENST00000576241 CXCL10P02778 98 aa15.74■□□□□ 0.11
CCDC40-216ENST00000576241 WDR5P61964 334 aaKnown RBP15.74■□□□□ 0.11
CCDC40-216ENST00000576241 ZNF200P98182 395 aaPredicted RBP15.74■□□□□ 0.11
CCDC40-216ENST00000576241 TRIM71Q2Q1W2 868 aaKnown RBP15.74■□□□□ 0.11
CCDC40-216ENST00000576241 ZNF618Q5T7W0 954 aa15.74■□□□□ 0.11
CCDC40-216ENST00000576241 SERINC5Q86VE9 423 aa15.74■□□□□ 0.11
CCDC40-216ENST00000576241 MICU3Q86XE3 530 aa15.74■□□□□ 0.11
CCDC40-216ENST00000576241 RAB11FIP4Q86YS3 637 aa15.74■□□□□ 0.11
CCDC40-216ENST00000576241 FAM178BQ8IXR5 827 aa15.74■□□□□ 0.11
CCDC40-216ENST00000576241 CCDC82Q8N4S0 544 aa15.74■□□□□ 0.11
CCDC40-216ENST00000576241 FANCBQ8NB91 859 aa15.74■□□□□ 0.11
CCDC40-216ENST00000576241 GIMAP8Q8ND71 665 aaPredicted RBP15.74■□□□□ 0.11
CCDC40-216ENST00000576241 ATP6V0A1Q93050 837 aa15.74■□□□□ 0.11
CCDC40-216ENST00000576241 ZBED2Q9BTP6 218 aa15.74■□□□□ 0.11
CCDC40-216ENST00000576241 ZNF215Q9UL58 517 aaPredicted RBP15.74■□□□□ 0.11
CCDC40-216ENST00000576241 BAZ2BQ9UIF8 2168 aaKnown RBP15.74■□□□□ 0.11
CCDC40-216ENST00000576241 ZDBF2Q9HCK1 2354 aa15.73■□□□□ 0.11
CCDC40-216ENST00000576241 EMSYQ7Z589 1322 aa15.73■□□□□ 0.11
CCDC40-216ENST00000576241 ABHD14A-ACY1A0A1B0GW23 586 aa15.73■□□□□ 0.11
CCDC40-216ENST00000576241 SMIM10L2AP0DMW4 78 aa15.73■□□□□ 0.11
CCDC40-216ENST00000576241 SMIM10L2BP0DMW5 78 aa15.73■□□□□ 0.11
CCDC40-216ENST00000576241 GNAT1P11488 350 aa15.73■□□□□ 0.11
CCDC40-216ENST00000576241 SSTR3P32745 418 aaPredicted RBP15.73■□□□□ 0.11
CCDC40-216ENST00000576241 THPOP40225 353 aa15.73■□□□□ 0.11
CCDC40-216ENST00000576241 SP4Q02446 784 aa15.73■□□□□ 0.11
CCDC40-216ENST00000576241 SEMA3FQ13275 785 aa15.73■□□□□ 0.11
CCDC40-216ENST00000576241 GRB10Q13322 594 aa15.73■□□□□ 0.11
CCDC40-216ENST00000576241 COL9A3Q14050 684 aaPredicted RBP15.73■□□□□ 0.11
CCDC40-216ENST00000576241 IKBKEQ14164 716 aa15.73■□□□□ 0.11
CCDC40-216ENST00000576241 GPNMBQ14956 572 aa15.73■□□□□ 0.11
CCDC40-216ENST00000576241 TMTC3Q6ZXV5 915 aa15.73■□□□□ 0.11
CCDC40-216ENST00000576241 HEATR3Q7Z4Q2 680 aa15.73■□□□□ 0.11
CCDC40-216ENST00000576241 SGMS1Q86VZ5 419 aa15.73■□□□□ 0.11
CCDC40-216ENST00000576241 WNT8BQ93098 351 aa15.73■□□□□ 0.11
CCDC40-216ENST00000576241 CDHR1Q96JP9 859 aa15.73■□□□□ 0.11
CCDC40-216ENST00000576241 NEK1Q96PY6 1258 aa15.73■□□□□ 0.11
CCDC40-216ENST00000576241 GPR20Q99678 358 aa15.73■□□□□ 0.11
CCDC40-216ENST00000576241 SENP7Q9BQF6 1050 aa15.73■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms