RNA–Protein interactions for RNA: ENST00000574933.1

CCDC40-213, Transcript of coiled-coil domain containing 40, humanhuman

TSL 3

Gene CCDC40, Length 326 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-213ENST00000574933 MTMR9Q96QG7 549 aa20.59■□□□□ 0.89
CCDC40-213ENST00000574933 ZNF577Q9BSK1 485 aa20.59■□□□□ 0.89
CCDC40-213ENST00000574933 OGDHLQ9ULD0 1010 aa20.59■□□□□ 0.89
CCDC40-213ENST00000574933 SYNRGQ9UMZ2 1314 aa20.58■□□□□ 0.89
CCDC40-213ENST00000574933 NEMFO60524 1076 aa20.58■□□□□ 0.89
CCDC40-213ENST00000574933 SGPL1O95470 568 aa20.58■□□□□ 0.89
CCDC40-213ENST00000574933 HOXD8P13378 290 aaPredicted RBP20.58■□□□□ 0.89
CCDC40-213ENST00000574933 MCM7P33993 719 aa20.58■□□□□ 0.89
CCDC40-213ENST00000574933 GJA8P48165 433 aa20.58■□□□□ 0.89
CCDC40-213ENST00000574933 POTEDQ86YR6 584 aa20.58■□□□□ 0.89
CCDC40-213ENST00000574933 DHX37Q8IY37 1157 aaKnown RBP20.58■□□□□ 0.89
CCDC40-213ENST00000574933 KLHDC9Q8NEP7 349 aa20.58■□□□□ 0.89
CCDC40-213ENST00000574933 LENG1Q96BZ8 264 aaPredicted RBP20.58■□□□□ 0.89
CCDC40-213ENST00000574933 DEFB118Q96PH6 123 aa20.58■□□□□ 0.89
CCDC40-213ENST00000574933 BCAS3Q9H6U6 928 aa20.58■□□□□ 0.89
CCDC40-213ENST00000574933 XPNPEP3Q9NQH7 507 aa20.58■□□□□ 0.89
CCDC40-213ENST00000574933 MORC2Q9Y6X9 1032 aaPredicted RBP20.58■□□□□ 0.89
CCDC40-213ENST00000574933 A6NJR5 290 aa20.57■□□□□ 0.88
CCDC40-213ENST00000574933 LAD1O00515 517 aa20.57■□□□□ 0.88
CCDC40-213ENST00000574933 DYNC1LI2O43237 492 aaPredicted RBP20.57■□□□□ 0.88
CCDC40-213ENST00000574933 PSMD10O75832 226 aa20.57■□□□□ 0.88
CCDC40-213ENST00000574933 BMP15O95972 392 aa20.57■□□□□ 0.88
CCDC40-213ENST00000574933 NBR1Q14596 966 aa20.57■□□□□ 0.88
CCDC40-213ENST00000574933 ANO1Q5XXA6 986 aa20.57■□□□□ 0.88
CCDC40-213ENST00000574933 ATL3Q6DD88 541 aa20.57■□□□□ 0.88
CCDC40-213ENST00000574933 B3GNT9Q6UX72 402 aa20.57■□□□□ 0.88
CCDC40-213ENST00000574933 SLFN12Q8IYM2 578 aa20.57■□□□□ 0.88
CCDC40-213ENST00000574933 OR6J1Q8NGC5 347 aa20.57■□□□□ 0.88
CCDC40-213ENST00000574933 PPTC7Q8NI37 304 aa20.57■□□□□ 0.88
CCDC40-213ENST00000574933 U2AF1L4Q8WU68 220 aaKnown RBP20.57■□□□□ 0.88
CCDC40-213ENST00000574933 SDF4Q9BRK5 362 aa20.57■□□□□ 0.88
CCDC40-213ENST00000574933 TMEM106CQ9BVX2 250 aa20.57■□□□□ 0.88
CCDC40-213ENST00000574933 AP5M1Q9H0R1 490 aa20.57■□□□□ 0.88
CCDC40-213ENST00000574933 TMEM60Q9H2L4 133 aa20.57■□□□□ 0.88
CCDC40-213ENST00000574933 BAG4O95429 457 aaKnown RBP20.56■□□□□ 0.88
CCDC40-213ENST00000574933 PTGS1P23219 599 aa20.56■□□□□ 0.88
CCDC40-213ENST00000574933 CALCRLQ16602 461 aa20.56■□□□□ 0.88
CCDC40-213ENST00000574933 CCSAPQ6IQ19 270 aaPredicted RBP20.56■□□□□ 0.88
CCDC40-213ENST00000574933 FAM173BQ6P4H8 233 aa20.56■□□□□ 0.88
CCDC40-213ENST00000574933 CYFIP1Q7L576 1253 aa20.56■□□□□ 0.88
CCDC40-213ENST00000574933 ABHD8Q96I13 439 aa20.56■□□□□ 0.88
CCDC40-213ENST00000574933 MLXIPQ9HAP2 919 aa20.56■□□□□ 0.88
CCDC40-213ENST00000574933 SPC25Q9HBM1 224 aa20.56■□□□□ 0.88
CCDC40-213ENST00000574933 JPH1Q9HDC5 661 aaPredicted RBP20.56■□□□□ 0.88
CCDC40-213ENST00000574933 SLC9A2Q9UBY0 812 aa20.56■□□□□ 0.88
CCDC40-213ENST00000574933 PGK1P00558 417 aa20.55■□□□□ 0.88
CCDC40-213ENST00000574933 MYCP01106 439 aaPredicted RBP20.55■□□□□ 0.88
CCDC40-213ENST00000574933 PRPHP41219 470 aa20.55■□□□□ 0.88
CCDC40-213ENST00000574933 ATP2C1P98194 919 aaPredicted RBP20.55■□□□□ 0.88
CCDC40-213ENST00000574933 KRT76Q01546 638 aa20.55■□□□□ 0.88
CCDC40-213ENST00000574933 PTGDRQ13258 359 aa20.55■□□□□ 0.88
CCDC40-213ENST00000574933 LRRC41Q15345 812 aa20.55■□□□□ 0.88
CCDC40-213ENST00000574933 LRCH2Q5VUJ6 765 aa20.55■□□□□ 0.88
CCDC40-213ENST00000574933 FOXD4L5Q5VV16 416 aaPredicted RBP20.55■□□□□ 0.88
CCDC40-213ENST00000574933 ZNF746Q6NUN9 644 aaPredicted RBP20.55■□□□□ 0.88
CCDC40-213ENST00000574933 ARRDC4Q8NCT1 418 aa20.55■□□□□ 0.88
CCDC40-213ENST00000574933 FOXD4L4Q8WXT5 416 aaPredicted RBP20.55■□□□□ 0.88
CCDC40-213ENST00000574933 TSEN34Q9BSV6 310 aaKnown RBP20.55■□□□□ 0.88
CCDC40-213ENST00000574933 PKD2L1Q9P0L9 805 aa20.55■□□□□ 0.88
CCDC40-213ENST00000574933 GAS7O60861 476 aa20.54■□□□□ 0.88
CCDC40-213ENST00000574933 ATG7O95352 703 aa20.54■□□□□ 0.88
CCDC40-213ENST00000574933 OR52Z1P0C646 297 aa20.54■□□□□ 0.88
CCDC40-213ENST00000574933 NASPP49321 788 aaPredicted RBP20.54■□□□□ 0.88
CCDC40-213ENST00000574933 CPT1AP50416 773 aa20.54■□□□□ 0.88
CCDC40-213ENST00000574933 PTPAQ15257 358 aa20.54■□□□□ 0.88
CCDC40-213ENST00000574933 FSCN1Q16658 493 aaKnown RBP20.54■□□□□ 0.88
CCDC40-213ENST00000574933 HSDL1Q3SXM5 330 aa20.54■□□□□ 0.88
CCDC40-213ENST00000574933 RNF180Q86T96 592 aa20.54■□□□□ 0.88
CCDC40-213ENST00000574933 ANKLE1Q8NAG6 615 aa20.54■□□□□ 0.88
CCDC40-213ENST00000574933 AFG1LQ8WV93 481 aa20.54■□□□□ 0.88
CCDC40-213ENST00000574933 SPATA33Q96N06 139 aa20.54■□□□□ 0.88
CCDC40-213ENST00000574933 ZNF396Q96N95 335 aaPredicted RBP20.54■□□□□ 0.88
CCDC40-213ENST00000574933 GPR20Q99678 358 aa20.54■□□□□ 0.88
CCDC40-213ENST00000574933 TEKT3Q9BXF9 490 aa20.54■□□□□ 0.88
CCDC40-213ENST00000574933 POLR3EQ9NVU0 708 aa20.54■□□□□ 0.88
CCDC40-213ENST00000574933 VAV3Q9UKW4 847 aa20.54■□□□□ 0.88
CCDC40-213ENST00000574933 CEP131Q9UPN4 1083 aa20.54■□□□□ 0.88
CCDC40-213ENST00000574933 ATP6V1DQ9Y5K8 247 aa20.54■□□□□ 0.88
CCDC40-213ENST00000574933 MYADML2A6NDP7 307 aa20.53■□□□□ 0.88
CCDC40-213ENST00000574933 PPFIA4O75335 1185 aa20.53■□□□□ 0.88
CCDC40-213ENST00000574933 CCNE2O96020 404 aa20.53■□□□□ 0.88
CCDC40-213ENST00000574933 MMP3P08254 477 aa20.53■□□□□ 0.88
CCDC40-213ENST00000574933 C6orf222P0C671 652 aaPredicted RBP20.53■□□□□ 0.88
CCDC40-213ENST00000574933 SPIRE1Q08AE8 756 aa20.53■□□□□ 0.88
CCDC40-213ENST00000574933 PPP2R5CQ13362 524 aa20.53■□□□□ 0.88
CCDC40-213ENST00000574933 SF3A1Q15459 793 aaKnown RBP20.53■□□□□ 0.88
CCDC40-213ENST00000574933 BRDTQ58F21 947 aaPredicted RBP20.53■□□□□ 0.88
CCDC40-213ENST00000574933 ARL6IP4Q66PJ3 421 aaKnown RBP20.53■□□□□ 0.88
CCDC40-213ENST00000574933 PCSK9Q8NBP7 692 aaKnown RBP20.53■□□□□ 0.88
CCDC40-213ENST00000574933 RDM1Q8NG50 284 aa20.53■□□□□ 0.88
CCDC40-213ENST00000574933 USP28Q96RU2 1077 aa20.53■□□□□ 0.88
CCDC40-213ENST00000574933 CHMP5Q9NZZ3 219 aa20.53■□□□□ 0.88
CCDC40-213ENST00000574933 ELP1O95163 1332 aa20.53■□□□□ 0.88
CCDC40-213ENST00000574933 TRIP12Q14669 1992 aaPredicted RBP20.52■□□□□ 0.88
CCDC40-213ENST00000574933 GSTTP1A0A1W2PQM5 241 aa20.52■□□□□ 0.88
CCDC40-213ENST00000574933 KPNA6O60684 536 aa20.52■□□□□ 0.88
CCDC40-213ENST00000574933 ACTR2P61160 394 aa20.52■□□□□ 0.88
CCDC40-213ENST00000574933 IRX5P78411 483 aaPredicted RBP20.52■□□□□ 0.88
CCDC40-213ENST00000574933 SMAP1Q8IYB5 467 aaPredicted RBP20.52■□□□□ 0.88
CCDC40-213ENST00000574933 TNS4Q8IZW8 715 aa20.52■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms