RNA–Protein interactions for RNA: ENST00000574855.1

NUP88-209, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 434 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-209ENST00000574855 ZBTB38Q8NAP3 1195 aaPredicted RBP4.84□□□□□ -1.63
NUP88-209ENST00000574855 CXorf38Q8TB03 319 aa4.84□□□□□ -1.63
NUP88-209ENST00000574855 PUM2Q8TB72 1066 aaKnown RBP eCLIP4.84□□□□□ -1.63
NUP88-209ENST00000574855 PIP4K2CQ8TBX8 421 aa4.84□□□□□ -1.63
NUP88-209ENST00000574855 SYT3Q9BQG1 590 aa4.84□□□□□ -1.63
NUP88-209ENST00000574855 NUB1Q9Y5A7 615 aa4.84□□□□□ -1.63
NUP88-209ENST00000574855 TRBV23-1A0A0A0MS06 115 aa4.83□□□□□ -1.64
NUP88-209ENST00000574855 FAM47E-STBD1D6RA91 191 aa4.83□□□□□ -1.64
NUP88-209ENST00000574855 PRRG2O14669 202 aa4.83□□□□□ -1.64
NUP88-209ENST00000574855 ADCY3O60266 1144 aa4.83□□□□□ -1.64
NUP88-209ENST00000574855 GNAT1P11488 350 aa4.83□□□□□ -1.64
NUP88-209ENST00000574855 SYN1P17600 705 aa4.83□□□□□ -1.64
NUP88-209ENST00000574855 GRK2P25098 689 aa4.83□□□□□ -1.64
NUP88-209ENST00000574855 GRK3P35626 688 aa4.83□□□□□ -1.64
NUP88-209ENST00000574855 GJA9P57773 515 aa4.83□□□□□ -1.64
NUP88-209ENST00000574855 TEPPQ6URK8 271 aa4.83□□□□□ -1.64
NUP88-209ENST00000574855 OTOP3Q7RTS5 596 aa4.83□□□□□ -1.64
NUP88-209ENST00000574855 LRP10Q7Z4F1 713 aa4.83□□□□□ -1.64
NUP88-209ENST00000574855 KCNJ15Q99712 375 aa4.83□□□□□ -1.64
NUP88-209ENST00000574855 ALG1Q9BT22 464 aa4.83□□□□□ -1.64
NUP88-209ENST00000574855 ADAM7Q9H2U9 754 aa4.83□□□□□ -1.64
NUP88-209ENST00000574855 PPARGC1AQ9UBK2 798 aaKnown RBP4.83□□□□□ -1.64
NUP88-209ENST00000574855 ASH2LQ9UBL3 628 aa4.83□□□□□ -1.64
NUP88-209ENST00000574855 NCANO14594 1321 aa4.82□□□□□ -1.64
NUP88-209ENST00000574855 SLC27A2O14975 620 aa4.82□□□□□ -1.64
NUP88-209ENST00000574855 NOBOXO60393 691 aa4.82□□□□□ -1.64
NUP88-209ENST00000574855 CYP7B1O75881 506 aa4.82□□□□□ -1.64
NUP88-209ENST00000574855 SOD2P04179 222 aa4.82□□□□□ -1.64
NUP88-209ENST00000574855 COL6A2P12110 1019 aa4.82□□□□□ -1.64
NUP88-209ENST00000574855 SUMO1P63165 101 aaKnown RBP4.82□□□□□ -1.64
NUP88-209ENST00000574855 KIAA2012Q0VF49 1180 aa4.82□□□□□ -1.64
NUP88-209ENST00000574855 SF3A1Q15459 793 aaKnown RBP4.82□□□□□ -1.64
NUP88-209ENST00000574855 LONRF2Q1L5Z9 754 aa4.82□□□□□ -1.64
NUP88-209ENST00000574855 UBXN11Q5T124 520 aa4.82□□□□□ -1.64
NUP88-209ENST00000574855 ZFYVE27Q5T4F4 411 aa4.82□□□□□ -1.64
NUP88-209ENST00000574855 MAMDC2Q7Z304 686 aaPredicted RBP4.82□□□□□ -1.64
NUP88-209ENST00000574855 ZNF761Q86XN6 746 aaPredicted RBP4.82□□□□□ -1.64
NUP88-209ENST00000574855 ADAMTS17Q8TE56 1095 aa4.82□□□□□ -1.64
NUP88-209ENST00000574855 PTPRN2Q92932 1015 aa4.82□□□□□ -1.64
NUP88-209ENST00000574855 CLIC6Q96NY7 704 aa4.82□□□□□ -1.64
NUP88-209ENST00000574855 HSPBP1Q9NZL4 362 aa4.82□□□□□ -1.64
NUP88-209ENST00000574855 KDM2BQ8NHM5 1336 aa4.81□□□□□ -1.64
NUP88-209ENST00000574855 DDX3XO00571 662 aaKnown RBP eCLIP4.81□□□□□ -1.64
NUP88-209ENST00000574855 AQP7O14520 342 aa4.81□□□□□ -1.64
NUP88-209ENST00000574855 LRG1P02750 347 aa4.81□□□□□ -1.64
NUP88-209ENST00000574855 CELA3BP08861 270 aa4.81□□□□□ -1.64
NUP88-209ENST00000574855 PAK1Q13153 545 aa4.81□□□□□ -1.64
NUP88-209ENST00000574855 ADAM9Q13443 819 aa4.81□□□□□ -1.64
NUP88-209ENST00000574855 SERINC3Q13530 473 aa4.81□□□□□ -1.64
NUP88-209ENST00000574855 RGL3Q3MIN7 710 aa4.81□□□□□ -1.64
NUP88-209ENST00000574855 ZC3H12BQ5HYM0 836 aaKnown RBP4.81□□□□□ -1.64
NUP88-209ENST00000574855 FAM209AQ5JX71 171 aa4.81□□□□□ -1.64
NUP88-209ENST00000574855 FAM26FQ5R3K3 315 aa4.81□□□□□ -1.64
NUP88-209ENST00000574855 PRAMEF18Q5VWM3 479 aa4.81□□□□□ -1.64
NUP88-209ENST00000574855 MCTP2Q6DN12 878 aa4.81□□□□□ -1.64
NUP88-209ENST00000574855 FAM124AQ86V42 546 aa4.81□□□□□ -1.64
NUP88-209ENST00000574855 TTLL11Q8NHH1 800 aa4.81□□□□□ -1.64
NUP88-209ENST00000574855 CLEC4DQ8WXI8 215 aa4.81□□□□□ -1.64
NUP88-209ENST00000574855 DEPDC7Q96QD5 511 aa4.81□□□□□ -1.64
NUP88-209ENST00000574855 TMEM209Q96SK2 561 aa4.81□□□□□ -1.64
NUP88-209ENST00000574855 DSEQ9UL01 958 aa4.81□□□□□ -1.64
NUP88-209ENST00000574855 TRAF6Q9Y4K3 522 aa4.81□□□□□ -1.64
NUP88-209ENST00000574855 ASXL2Q76L83 1435 aa4.8□□□□□ -1.64
NUP88-209ENST00000574855 DIAPH1O60610 1272 aaKnown RBP4.8□□□□□ -1.64
NUP88-209ENST00000574855 FAM153BP0C7A2 387 aa4.8□□□□□ -1.64
NUP88-209ENST00000574855 NAT1P18440 290 aa4.8□□□□□ -1.64
NUP88-209ENST00000574855 GRIN1Q05586 938 aa4.8□□□□□ -1.64
NUP88-209ENST00000574855 TUSC3Q13454 348 aa4.8□□□□□ -1.64
NUP88-209ENST00000574855 PRR31Q5SQ13 230 aa4.8□□□□□ -1.64
NUP88-209ENST00000574855 FOXB2Q5VYV0 432 aa4.8□□□□□ -1.64
NUP88-209ENST00000574855 MTDHQ86UE4 582 aaKnown RBP4.8□□□□□ -1.64
NUP88-209ENST00000574855 FERMT3Q86UX7 667 aa4.8□□□□□ -1.64
NUP88-209ENST00000574855 RBM12BQ8IXT5 1001 aaKnown RBP4.8□□□□□ -1.64
NUP88-209ENST00000574855 TXNDC5Q8NBS9 432 aaKnown RBP4.8□□□□□ -1.64
NUP88-209ENST00000574855 UHMK1Q8TAS1 419 aaKnown RBP4.8□□□□□ -1.64
NUP88-209ENST00000574855 DDX1Q92499 740 aaKnown RBP4.8□□□□□ -1.64
NUP88-209ENST00000574855 MKL1Q969V6 931 aa4.8□□□□□ -1.64
NUP88-209ENST00000574855 WRNIP1Q96S55 665 aa4.8□□□□□ -1.64
NUP88-209ENST00000574855 SRPK1Q96SB4 655 aaKnown RBP4.8□□□□□ -1.64
NUP88-209ENST00000574855 DHRS4Q9BTZ2 278 aa4.8□□□□□ -1.64
NUP88-209ENST00000574855 LNPKQ9C0E8 428 aa4.8□□□□□ -1.64
NUP88-209ENST00000574855 IPPKQ9H8X2 491 aa4.8□□□□□ -1.64
NUP88-209ENST00000574855 MROH6A6NGR9 719 aa4.79□□□□□ -1.64
NUP88-209ENST00000574855 NKRFO15226 690 aaKnown RBP eCLIP4.79□□□□□ -1.64
NUP88-209ENST00000574855 PRICKLE3O43900 615 aaPredicted RBP4.79□□□□□ -1.64
NUP88-209ENST00000574855 APPP05067 770 aa4.79□□□□□ -1.64
NUP88-209ENST00000574855 IL13P35225 146 aa4.79□□□□□ -1.64
NUP88-209ENST00000574855 GABREP78334 506 aa4.79□□□□□ -1.64
NUP88-209ENST00000574855 GUCY1A3Q02108 690 aa4.79□□□□□ -1.64
NUP88-209ENST00000574855 PLP2Q04941 152 aa4.79□□□□□ -1.64
NUP88-209ENST00000574855 RASA3Q14644 834 aa4.79□□□□□ -1.64
NUP88-209ENST00000574855 TAF7LQ5H9L4 462 aa4.79□□□□□ -1.64
NUP88-209ENST00000574855 HABP4Q5JVS0 413 aaKnown RBP4.79□□□□□ -1.64
NUP88-209ENST00000574855 LCE5AQ5TCM9 118 aa4.79□□□□□ -1.64
NUP88-209ENST00000574855 BORAQ6PGQ7 559 aa4.79□□□□□ -1.64
NUP88-209ENST00000574855 PNPLA5Q7Z6Z6 429 aaPredicted RBP4.79□□□□□ -1.64
NUP88-209ENST00000574855 LCORQ96JN0 433 aaPredicted RBP4.79□□□□□ -1.64
NUP88-209ENST00000574855 DNAJC7Q99615 494 aa4.79□□□□□ -1.64
NUP88-209ENST00000574855 PDGFDQ9GZP0 370 aaPredicted RBP4.79□□□□□ -1.64
NUP88-209ENST00000574855 L2HGDHQ9H9P8 463 aa4.79□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 486.4 ms