RNA–Protein interactions for RNA: ENST00000574087.1

NUP88-208, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 548 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-208ENST00000574087 TXKP42681 527 aa6.9□□□□□ -1.3
NUP88-208ENST00000574087 JAM2P57087 298 aa6.9□□□□□ -1.3
NUP88-208ENST00000574087 TARBP2Q15633 366 aaKnown RBP6.9□□□□□ -1.3
NUP88-208ENST00000574087 CRY1Q16526 586 aa6.9□□□□□ -1.3
NUP88-208ENST00000574087 ARHGAP36Q6ZRI8 547 aa6.9□□□□□ -1.3
NUP88-208ENST00000574087 LRRTM3Q86VH5 581 aa6.9□□□□□ -1.3
NUP88-208ENST00000574087 TRIM48Q8IWZ4 208 aa6.9□□□□□ -1.3
NUP88-208ENST00000574087 FAM126BQ8IXS8 530 aa6.9□□□□□ -1.3
NUP88-208ENST00000574087 RBM12BQ8IXT5 1001 aaKnown RBP6.9□□□□□ -1.3
NUP88-208ENST00000574087 PANK1Q8TE04 598 aa6.9□□□□□ -1.3
NUP88-208ENST00000574087 SLC38A3Q99624 504 aa6.9□□□□□ -1.3
NUP88-208ENST00000574087 SMURF1Q9HCE7 757 aa6.9□□□□□ -1.3
NUP88-208ENST00000574087 TELO2Q9Y4R8 837 aa6.9□□□□□ -1.3
NUP88-208ENST00000574087 NUB1Q9Y5A7 615 aa6.9□□□□□ -1.3
NUP88-208ENST00000574087 MAN2B1O00754 1011 aa6.89□□□□□ -1.31
NUP88-208ENST00000574087 BUB1BO60566 1050 aaPredicted RBP6.89□□□□□ -1.31
NUP88-208ENST00000574087 TSPAN15O95858 294 aa6.89□□□□□ -1.31
NUP88-208ENST00000574087 C1QTNF9P0C862 333 aa6.89□□□□□ -1.31
NUP88-208ENST00000574087 PFKLP17858 780 aa6.89□□□□□ -1.31
NUP88-208ENST00000574087 MC3RP41968 323 aa6.89□□□□□ -1.31
NUP88-208ENST00000574087 CACNB2Q08289 660 aaPredicted RBP6.89□□□□□ -1.31
NUP88-208ENST00000574087 TUSC3Q13454 348 aa6.89□□□□□ -1.31
NUP88-208ENST00000574087 TMEM177Q53S58 311 aa6.89□□□□□ -1.31
NUP88-208ENST00000574087 ETV3LQ6ZN32 361 aa6.89□□□□□ -1.31
NUP88-208ENST00000574087 ATG14Q6ZNE5 492 aa6.89□□□□□ -1.31
NUP88-208ENST00000574087 KCTD1Q719H9 257 aa6.89□□□□□ -1.31
NUP88-208ENST00000574087 DDX53Q86TM3 631 aaKnown RBP6.89□□□□□ -1.31
NUP88-208ENST00000574087 TTLL11Q8NHH1 800 aa6.89□□□□□ -1.31
NUP88-208ENST00000574087 DDX1Q92499 740 aaKnown RBP6.89□□□□□ -1.31
NUP88-208ENST00000574087 SAMD15Q9P1V8 674 aa6.89□□□□□ -1.31
NUP88-208ENST00000574087 SRPK3Q9UPE1 567 aa6.89□□□□□ -1.31
NUP88-208ENST00000574087 NFIBO00712 420 aa6.88□□□□□ -1.31
NUP88-208ENST00000574087 GLRX3O76003 335 aaKnown RBP6.88□□□□□ -1.31
NUP88-208ENST00000574087 CLSTN1O94985 981 aa6.88□□□□□ -1.31
NUP88-208ENST00000574087 LTFP02788 710 aa6.88□□□□□ -1.31
NUP88-208ENST00000574087 JMJD7P0C870 316 aa6.88□□□□□ -1.31
NUP88-208ENST00000574087 FLT3P36888 993 aa6.88□□□□□ -1.31
NUP88-208ENST00000574087 MECP2P51608 486 aaKnown RBP6.88□□□□□ -1.31
NUP88-208ENST00000574087 CDCA2Q69YH5 1023 aaPredicted RBP6.88□□□□□ -1.31
NUP88-208ENST00000574087 HHIPL2Q6UWX4 724 aa6.88□□□□□ -1.31
NUP88-208ENST00000574087 PNPLA5Q7Z6Z6 429 aaPredicted RBP6.88□□□□□ -1.31
NUP88-208ENST00000574087 PTRH1Q86Y79 214 aaKnown RBP6.88□□□□□ -1.31
NUP88-208ENST00000574087 TMEFF1Q8IYR6 380 aa6.88□□□□□ -1.31
NUP88-208ENST00000574087 NLGN4XQ8N0W4 816 aa6.88□□□□□ -1.31
NUP88-208ENST00000574087 CISD2Q8N5K1 135 aaKnown RBP6.88□□□□□ -1.31
NUP88-208ENST00000574087 ORAI3Q9BRQ5 295 aa6.88□□□□□ -1.31
NUP88-208ENST00000574087 CD244Q9BZW8 370 aa6.88□□□□□ -1.31
NUP88-208ENST00000574087 CD320Q9NPF0 282 aa6.88□□□□□ -1.31
NUP88-208ENST00000574087 DTLQ9NZJ0 730 aa6.88□□□□□ -1.31
NUP88-208ENST00000574087 HSPBP1Q9NZL4 362 aa6.88□□□□□ -1.31
NUP88-208ENST00000574087 A0A087X0B3 334 aa6.87□□□□□ -1.31
NUP88-208ENST00000574087 M0R2C6 588 aa6.87□□□□□ -1.31
NUP88-208ENST00000574087 TRAF5O00463 557 aa6.87□□□□□ -1.31
NUP88-208ENST00000574087 LRG1P02750 347 aa6.87□□□□□ -1.31
NUP88-208ENST00000574087 KRT15P19012 456 aa6.87□□□□□ -1.31
NUP88-208ENST00000574087 CR1LQ2VPA4 569 aa6.87□□□□□ -1.31
NUP88-208ENST00000574087 FIGNQ5HY92 759 aa6.87□□□□□ -1.31
NUP88-208ENST00000574087 PIK3R6Q5UE93 754 aa6.87□□□□□ -1.31
NUP88-208ENST00000574087 CNNM4Q6P4Q7 775 aa6.87□□□□□ -1.31
NUP88-208ENST00000574087 UBE2R2Q712K3 238 aaPredicted RBP6.87□□□□□ -1.31
NUP88-208ENST00000574087 B3GNT8Q7Z7M8 397 aa6.87□□□□□ -1.31
NUP88-208ENST00000574087 SIGLEC10Q96LC7 697 aa6.87□□□□□ -1.31
NUP88-208ENST00000574087 TARS2Q9BW92 718 aaKnown RBP6.87□□□□□ -1.31
NUP88-208ENST00000574087 MTFR1LQ9H019 292 aa6.87□□□□□ -1.31
NUP88-208ENST00000574087 SLKQ9H2G2 1235 aaPredicted RBP6.87□□□□□ -1.31
NUP88-208ENST00000574087 SMG5Q9UPR3 1016 aaKnown RBP6.87□□□□□ -1.31
NUP88-208ENST00000574087 C8AP07357 584 aa6.86□□□□□ -1.31
NUP88-208ENST00000574087 C8BP07358 591 aa6.86□□□□□ -1.31
NUP88-208ENST00000574087 STAT5AP42229 794 aa6.86□□□□□ -1.31
NUP88-208ENST00000574087 FOXO4P98177 505 aa6.86□□□□□ -1.31
NUP88-208ENST00000574087 GRIN1Q05586 938 aa6.86□□□□□ -1.31
NUP88-208ENST00000574087 CFAP100Q494V2 611 aa6.86□□□□□ -1.31
NUP88-208ENST00000574087 TAF7LQ5H9L4 462 aa6.86□□□□□ -1.31
NUP88-208ENST00000574087 OTOP1Q7RTM1 612 aa6.86□□□□□ -1.31
NUP88-208ENST00000574087 ANKLE2Q86XL3 938 aa6.86□□□□□ -1.31
NUP88-208ENST00000574087 NOSTRINQ8IVI9 506 aa6.86□□□□□ -1.31
NUP88-208ENST00000574087 FAM26EQ8N5C1 309 aa6.86□□□□□ -1.31
NUP88-208ENST00000574087 SMARCC2Q8TAQ2 1214 aa6.86□□□□□ -1.31
NUP88-208ENST00000574087 TOE1Q96GM8 510 aaKnown RBP6.86□□□□□ -1.31
NUP88-208ENST00000574087 WNK4Q96J92 1243 aa6.86□□□□□ -1.31
NUP88-208ENST00000574087 EPB41L4AQ9HCS5 686 aaPredicted RBP6.86□□□□□ -1.31
NUP88-208ENST00000574087 NGRNQ9NPE2 291 aaKnown RBP6.86□□□□□ -1.31
NUP88-208ENST00000574087 LOC105371045A0A1W2PR82 267 aa6.85□□□□□ -1.31
NUP88-208ENST00000574087 TCAF2A6NFQ2 919 aa6.85□□□□□ -1.31
NUP88-208ENST00000574087 FAM90A27PA6NNH2 459 aa6.85□□□□□ -1.31
NUP88-208ENST00000574087 GSG1L2A8MUP6 293 aa6.85□□□□□ -1.31
NUP88-208ENST00000574087 ACOT7O00154 380 aa6.85□□□□□ -1.31
NUP88-208ENST00000574087 CBX4O00257 560 aa6.85□□□□□ -1.31
NUP88-208ENST00000574087 KCNK3O14649 394 aa6.85□□□□□ -1.31
NUP88-208ENST00000574087 CLASP2O75122 1294 aaKnown RBP6.85□□□□□ -1.31
NUP88-208ENST00000574087 MYCLP1P12525 358 aaPredicted RBP6.85□□□□□ -1.31
NUP88-208ENST00000574087 SSPNQ14714 243 aa6.85□□□□□ -1.31
NUP88-208ENST00000574087 PAN2Q504Q3 1202 aaKnown RBP6.85□□□□□ -1.31
NUP88-208ENST00000574087 TEPPQ6URK8 271 aa6.85□□□□□ -1.31
NUP88-208ENST00000574087 CD300LDQ6UXZ3 194 aa6.85□□□□□ -1.31
NUP88-208ENST00000574087 C2orf69Q8N8R5 385 aa6.85□□□□□ -1.31
NUP88-208ENST00000574087 CHST14Q8NCH0 376 aa6.85□□□□□ -1.31
NUP88-208ENST00000574087 IRAK3Q9Y616 596 aa6.85□□□□□ -1.31
NUP88-208ENST00000574087 ATP23Q9Y6H3 246 aa6.85□□□□□ -1.31
NUP88-208ENST00000574087 SBNO2Q9Y2G9 1366 aa6.84□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms