RNA–Protein interactions for RNA: ENST00000572019.1

NUP88-203, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-203ENST00000572019 HOMER1Q86YM7 354 aa22.29■■□□□ 1.16
NUP88-203ENST00000572019 ATP6V0A1Q93050 837 aa22.29■■□□□ 1.16
NUP88-203ENST00000572019 DSCC1Q9BVC3 393 aa22.29■■□□□ 1.16
NUP88-203ENST00000572019 RNPEPQ9H4A4 650 aa22.29■■□□□ 1.16
NUP88-203ENST00000572019 ARIH1Q9Y4X5 557 aaPredicted RBP22.29■■□□□ 1.16
NUP88-203ENST00000572019 SUPT16HQ9Y5B9 1047 aaKnown RBP22.29■■□□□ 1.16
NUP88-203ENST00000572019 C5orf42Q9H799 3197 aa22.28■■□□□ 1.16
NUP88-203ENST00000572019 PALM3A6NDB9 673 aaPredicted RBP22.28■■□□□ 1.16
NUP88-203ENST00000572019 H3BRB1 525 aa22.28■■□□□ 1.16
NUP88-203ENST00000572019 ZBTB5O15062 677 aa22.28■■□□□ 1.16
NUP88-203ENST00000572019 CYTH3O43739 400 aa22.28■■□□□ 1.16
NUP88-203ENST00000572019 UPP2O95045 317 aa22.28■■□□□ 1.16
NUP88-203ENST00000572019 IFIT1BQ5T764 474 aaKnown RBP22.28■■□□□ 1.16
NUP88-203ENST00000572019 MRPL38Q96DV4 380 aaKnown RBP22.28■■□□□ 1.16
NUP88-203ENST00000572019 PIGSQ96S52 555 aa22.28■■□□□ 1.16
NUP88-203ENST00000572019 UBAC1Q9BSL1 405 aa22.28■■□□□ 1.16
NUP88-203ENST00000572019 OSBPL3Q9H4L5 887 aa22.28■■□□□ 1.16
NUP88-203ENST00000572019 TUT1Q9H6E5 874 aaKnown RBP22.28■■□□□ 1.16
NUP88-203ENST00000572019 DIAPH3Q9NSV4 1193 aa22.28■■□□□ 1.16
NUP88-203ENST00000572019 EMSYQ7Z589 1322 aa22.28■■□□□ 1.16
NUP88-203ENST00000572019 C17orf102A2RUQ5 167 aa22.27■■□□□ 1.16
NUP88-203ENST00000572019 GRXCR2A6NFK2 248 aa22.27■■□□□ 1.16
NUP88-203ENST00000572019 MRPS9P82933 396 aaKnown RBP22.27■■□□□ 1.16
NUP88-203ENST00000572019 IMMTQ16891 758 aaKnown RBP22.27■■□□□ 1.16
NUP88-203ENST00000572019 TCEAL5Q5H9L2 206 aa22.27■■□□□ 1.16
NUP88-203ENST00000572019 CHD1LQ86WJ1 897 aa22.27■■□□□ 1.16
NUP88-203ENST00000572019 NEK9Q8TD19 979 aa22.27■■□□□ 1.16
NUP88-203ENST00000572019 COL4A6Q14031 1691 aa22.26■■□□□ 1.15
NUP88-203ENST00000572019 TOP1MTQ969P6 601 aa22.26■■□□□ 1.15
NUP88-203ENST00000572019 KRT23Q9C075 422 aa22.26■■□□□ 1.15
NUP88-203ENST00000572019 MLXIPQ9HAP2 919 aa22.26■■□□□ 1.15
NUP88-203ENST00000572019 SETD4Q9NVD3 440 aa22.26■■□□□ 1.15
NUP88-203ENST00000572019 TAF6LQ9Y6J9 622 aa22.26■■□□□ 1.15
NUP88-203ENST00000572019 KIAA1671Q9BY89 1806 aa22.25■■□□□ 1.15
NUP88-203ENST00000572019 CCND2P30279 289 aa22.25■■□□□ 1.15
NUP88-203ENST00000572019 SSTR3P32745 418 aaPredicted RBP22.25■■□□□ 1.15
NUP88-203ENST00000572019 GPM6BQ13491 265 aa22.25■■□□□ 1.15
NUP88-203ENST00000572019 BANK1Q8NDB2 785 aa22.25■■□□□ 1.15
NUP88-203ENST00000572019 YME1L1Q96TA2 773 aa22.25■■□□□ 1.15
NUP88-203ENST00000572019 LOXHD1Q8IVV2 1947 aa22.25■■□□□ 1.15
NUP88-203ENST00000572019 PIEZO1Q92508 2521 aa22.24■■□□□ 1.15
NUP88-203ENST00000572019 H3BNC9 293 aa22.24■■□□□ 1.15
NUP88-203ENST00000572019 LINC00271P0C7V0 271 aa22.24■■□□□ 1.15
NUP88-203ENST00000572019 NT5C2P49902 561 aa22.24■■□□□ 1.15
NUP88-203ENST00000572019 NUCB1Q02818 461 aa22.24■■□□□ 1.15
NUP88-203ENST00000572019 GRM4Q14833 912 aa22.24■■□□□ 1.15
NUP88-203ENST00000572019 KCNV1Q6PIU1 500 aa22.24■■□□□ 1.15
NUP88-203ENST00000572019 TMEM192Q8IY95 271 aa22.24■■□□□ 1.15
NUP88-203ENST00000572019 SEPT8Q92599 483 aa22.24■■□□□ 1.15
NUP88-203ENST00000572019 RIOX1Q9H6W3 641 aa22.24■■□□□ 1.15
NUP88-203ENST00000572019 RTEL1Q9NZ71 1219 aa22.24■■□□□ 1.15
NUP88-203ENST00000572019 GCOM1H8Y6P7 765 aaPredicted RBP22.23■■□□□ 1.15
NUP88-203ENST00000572019 POLR2MP0CAP2 368 aa22.23■■□□□ 1.15
NUP88-203ENST00000572019 TGFB3P10600 412 aa22.23■■□□□ 1.15
NUP88-203ENST00000572019 ADAM17P78536 824 aa22.23■■□□□ 1.15
NUP88-203ENST00000572019 COL19A1Q14993 1142 aa22.23■■□□□ 1.15
NUP88-203ENST00000572019 CYFIP1Q7L576 1253 aa22.23■■□□□ 1.15
NUP88-203ENST00000572019 PIBF1Q8WXW3 757 aa22.23■■□□□ 1.15
NUP88-203ENST00000572019 GPR20Q99678 358 aa22.23■■□□□ 1.15
NUP88-203ENST00000572019 MAP3K20Q9NYL2 800 aaKnown RBP22.23■■□□□ 1.15
NUP88-203ENST00000572019 FRMPD4Q14CM0 1322 aa22.23■■□□□ 1.15
NUP88-203ENST00000572019 ZNF318Q5VUA4 2279 aa22.22■■□□□ 1.15
NUP88-203ENST00000572019 PRR33A8MZF0 331 aa22.22■■□□□ 1.15
NUP88-203ENST00000572019 LTBRP36941 435 aa22.22■■□□□ 1.15
NUP88-203ENST00000572019 EP400NLQ6ZTU2 488 aa22.22■■□□□ 1.15
NUP88-203ENST00000572019 INPP4AQ96PE3 977 aaPredicted RBP22.22■■□□□ 1.15
NUP88-203ENST00000572019 IFIH1Q9BYX4 1025 aaKnown RBP22.22■■□□□ 1.15
NUP88-203ENST00000572019 CNNM2Q9H8M5 875 aa22.22■■□□□ 1.15
NUP88-203ENST00000572019 TTC3P53804 2025 aa22.22■■□□□ 1.15
NUP88-203ENST00000572019 SPATA31C2B4DYI2 1134 aa22.21■■□□□ 1.15
NUP88-203ENST00000572019 CHRNA1P02708 482 aa22.21■■□□□ 1.15
NUP88-203ENST00000572019 SP4Q02446 784 aa22.21■■□□□ 1.15
NUP88-203ENST00000572019 DLX2Q07687 328 aaPredicted RBP22.21■■□□□ 1.15
NUP88-203ENST00000572019 TIGD5Q53EQ6 642 aa22.21■■□□□ 1.15
NUP88-203ENST00000572019 UTP14CQ5TAP6 766 aaKnown RBP22.21■■□□□ 1.15
NUP88-203ENST00000572019 RUFY4Q6ZNE9 571 aa22.21■■□□□ 1.15
NUP88-203ENST00000572019 LMBR1Q8WVP7 490 aa22.21■■□□□ 1.15
NUP88-203ENST00000572019 CTNNA3Q9UI47 895 aa22.21■■□□□ 1.15
NUP88-203ENST00000572019 NOP56O00567 594 aaKnown RBP22.2■■□□□ 1.14
NUP88-203ENST00000572019 ICAM3P32942 547 aa22.2■■□□□ 1.14
NUP88-203ENST00000572019 ZP2Q05996 745 aa22.2■■□□□ 1.14
NUP88-203ENST00000572019 PTPROQ16827 1216 aa22.2■■□□□ 1.14
NUP88-203ENST00000572019 METTL7BQ6UX53 244 aa22.2■■□□□ 1.14
NUP88-203ENST00000572019 ALYREFQ86V81 257 aaKnown RBP22.2■■□□□ 1.14
NUP88-203ENST00000572019 PABPC5Q96DU9 382 aaKnown RBP22.2■■□□□ 1.14
NUP88-203ENST00000572019 WDFY4Q6ZS81 3184 aa22.2■■□□□ 1.14
NUP88-203ENST00000572019 GRM6O15303 877 aa22.19■■□□□ 1.14
NUP88-203ENST00000572019 CSPG5O95196 566 aa22.19■■□□□ 1.14
NUP88-203ENST00000572019 GTF2F1P35269 517 aaKnown RBP eCLIP22.19■■□□□ 1.14
NUP88-203ENST00000572019 ARHGAP4P98171 946 aa22.19■■□□□ 1.14
NUP88-203ENST00000572019 PTH1RQ03431 593 aa22.19■■□□□ 1.14
NUP88-203ENST00000572019 TROAPQ12815 778 aa22.19■■□□□ 1.14
NUP88-203ENST00000572019 FAM26DQ5JW98 314 aa22.19■■□□□ 1.14
NUP88-203ENST00000572019 SAMD3Q8N6K7 520 aa22.19■■□□□ 1.14
NUP88-203ENST00000572019 SAMD11Q96NU1 681 aa22.19■■□□□ 1.14
NUP88-203ENST00000572019 UIMC1Q96RL1 719 aa22.19■■□□□ 1.14
NUP88-203ENST00000572019 NSUN3Q9H649 340 aaKnown RBP22.19■■□□□ 1.14
NUP88-203ENST00000572019 CLDND1Q9NY35 253 aa22.19■■□□□ 1.14
NUP88-203ENST00000572019 PNMA6FA0A0J9YX94 578 aa22.18■■□□□ 1.14
NUP88-203ENST00000572019 POTEB3A0JP26 581 aa22.18■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms