RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 TMEM260Q9NX78 707 aa23.43■■□□□ 1.34
VPS53-210ENST00000571456 CHD7Q9P2D1 2997 aa23.42■■□□□ 1.34
VPS53-210ENST00000571456 FIBPO43427 364 aa23.42■■□□□ 1.34
VPS53-210ENST00000571456 MRPS9P82933 396 aaKnown RBP23.42■■□□□ 1.34
VPS53-210ENST00000571456 TNFAIP2Q03169 654 aa23.42■■□□□ 1.34
VPS53-210ENST00000571456 DUSP28Q4G0W2 176 aa23.42■■□□□ 1.34
VPS53-210ENST00000571456 MOXD1Q6UVY6 613 aa23.42■■□□□ 1.34
VPS53-210ENST00000571456 DIS3L2Q8IYB7 885 aaKnown RBP23.42■■□□□ 1.34
VPS53-210ENST00000571456 GIMAP8Q8ND71 665 aaPredicted RBP23.42■■□□□ 1.34
VPS53-210ENST00000571456 PRDM12Q9H4Q4 367 aa23.42■■□□□ 1.34
VPS53-210ENST00000571456 SPC25Q9HBM1 224 aa23.42■■□□□ 1.34
VPS53-210ENST00000571456 XIRP2A4UGR9 3374 aa23.41■■□□□ 1.34
VPS53-210ENST00000571456 CIITAP33076 1130 aa23.41■■□□□ 1.34
VPS53-210ENST00000571456 SETQ01105 290 aaPredicted RBP23.41■■□□□ 1.34
VPS53-210ENST00000571456 EEPD1Q7L9B9 569 aa23.41■■□□□ 1.34
VPS53-210ENST00000571456 IL31RAQ8NI17 732 aa23.41■■□□□ 1.34
VPS53-210ENST00000571456 WDR11Q9BZH6 1224 aa23.41■■□□□ 1.34
VPS53-210ENST00000571456 PHF24Q9UPV7 400 aa23.41■■□□□ 1.34
VPS53-210ENST00000571456 HCN4Q9Y3Q4 1203 aa23.41■■□□□ 1.34
VPS53-210ENST00000571456 UBIAD1Q9Y5Z9 338 aa23.41■■□□□ 1.34
VPS53-210ENST00000571456 H3BQV1 296 aa23.4■■□□□ 1.34
VPS53-210ENST00000571456 ZNF76P36508 570 aa23.4■■□□□ 1.34
VPS53-210ENST00000571456 NKX3-2P78367 333 aa23.4■■□□□ 1.34
VPS53-210ENST00000571456 CCDC85BQ15834 202 aaPredicted RBP23.4■■□□□ 1.34
VPS53-210ENST00000571456 CEP55Q53EZ4 464 aa23.4■■□□□ 1.34
VPS53-210ENST00000571456 LARP1BQ659C4 914 aaKnown RBP23.4■■□□□ 1.34
VPS53-210ENST00000571456 SENP7Q9BQF6 1050 aa23.4■■□□□ 1.34
VPS53-210ENST00000571456 MXRA8Q9BRK3 442 aa23.4■■□□□ 1.34
VPS53-210ENST00000571456 JADE2Q9NQC1 790 aa23.4■■□□□ 1.34
VPS53-210ENST00000571456 MRVI1Q9Y6F6 885 aa23.4■■□□□ 1.34
VPS53-210ENST00000571456 TXNP10599 105 aaKnown RBP23.39■■□□□ 1.33
VPS53-210ENST00000571456 GCFC2P16383 781 aaKnown RBP23.39■■□□□ 1.33
VPS53-210ENST00000571456 GNL2Q13823 731 aaKnown RBP23.39■■□□□ 1.33
VPS53-210ENST00000571456 CCDC62Q6P9F0 684 aa23.39■■□□□ 1.33
VPS53-210ENST00000571456 SEPT14Q6ZU15 432 aa23.39■■□□□ 1.33
VPS53-210ENST00000571456 RASGRP4Q8TDF6 673 aa23.39■■□□□ 1.33
VPS53-210ENST00000571456 GJB4Q9NTQ9 266 aa23.39■■□□□ 1.33
VPS53-210ENST00000571456 TMEM39AQ9NV64 488 aa23.39■■□□□ 1.33
VPS53-210ENST00000571456 GNEQ9Y223 722 aaKnown RBP23.39■■□□□ 1.33
VPS53-210ENST00000571456 SPATA31C2B4DYI2 1134 aa23.38■■□□□ 1.33
VPS53-210ENST00000571456 PQBP1O60828 265 aaKnown RBP23.38■■□□□ 1.33
VPS53-210ENST00000571456 MTMR1Q13613 665 aa23.38■■□□□ 1.33
VPS53-210ENST00000571456 NEDD9Q14511 834 aa23.38■■□□□ 1.33
VPS53-210ENST00000571456 BRDTQ58F21 947 aaPredicted RBP23.38■■□□□ 1.33
VPS53-210ENST00000571456 NEK8Q86SG6 692 aa23.38■■□□□ 1.33
VPS53-210ENST00000571456 RNF180Q86T96 592 aa23.38■■□□□ 1.33
VPS53-210ENST00000571456 TBCKQ8TEA7 893 aa23.38■■□□□ 1.33
VPS53-210ENST00000571456 TNFRSF25Q93038 417 aa23.38■■□□□ 1.33
VPS53-210ENST00000571456 PGBD1Q96JS3 809 aa23.38■■□□□ 1.33
VPS53-210ENST00000571456 NECAB3Q96P71 396 aaPredicted RBP23.38■■□□□ 1.33
VPS53-210ENST00000571456 PBX4Q9BYU1 374 aa23.38■■□□□ 1.33
VPS53-210ENST00000571456 AP5M1Q9H0R1 490 aa23.38■■□□□ 1.33
VPS53-210ENST00000571456 XPNPEP3Q9NQH7 507 aa23.38■■□□□ 1.33
VPS53-210ENST00000571456 BTBD18B2RXH4 712 aa23.37■■□□□ 1.33
VPS53-210ENST00000571456 MEIS1O00470 390 aa23.37■■□□□ 1.33
VPS53-210ENST00000571456 RGS20O76081 388 aa23.37■■□□□ 1.33
VPS53-210ENST00000571456 SMPD1P17405 629 aa23.37■■□□□ 1.33
VPS53-210ENST00000571456 U2AF2P26368 475 aaKnown RBP eCLIP23.37■■□□□ 1.33
VPS53-210ENST00000571456 PBX2P40425 430 aa23.37■■□□□ 1.33
VPS53-210ENST00000571456 GJA9P57773 515 aa23.37■■□□□ 1.33
VPS53-210ENST00000571456 ADGRE1Q14246 886 aa23.37■■□□□ 1.33
VPS53-210ENST00000571456 EMID1Q96A84 441 aaPredicted RBP23.37■■□□□ 1.33
VPS53-210ENST00000571456 UPF3AQ9H1J1 476 aaKnown RBP23.37■■□□□ 1.33
VPS53-210ENST00000571456 PDGFCQ9NRA1 345 aa23.37■■□□□ 1.33
VPS53-210ENST00000571456 DDX41Q9UJV9 622 aaKnown RBP23.37■■□□□ 1.33
VPS53-210ENST00000571456 CYP3A7-CYP3A51PA0A087WV96 503 aa23.36■■□□□ 1.33
VPS53-210ENST00000571456 DTNBO60941 627 aa23.36■■□□□ 1.33
VPS53-210ENST00000571456 GH1P01241 217 aa23.36■■□□□ 1.33
VPS53-210ENST00000571456 ITGB5P18084 799 aa23.36■■□□□ 1.33
VPS53-210ENST00000571456 IGFBP4P22692 258 aa23.36■■□□□ 1.33
VPS53-210ENST00000571456 CYP3A7P24462 503 aa23.36■■□□□ 1.33
VPS53-210ENST00000571456 CST5P28325 142 aaPredicted RBP23.36■■□□□ 1.33
VPS53-210ENST00000571456 TRAPPC10P48553 1259 aa23.36■■□□□ 1.33
VPS53-210ENST00000571456 ORC2Q13416 577 aaPredicted RBP23.36■■□□□ 1.33
VPS53-210ENST00000571456 LAMC2Q13753 1193 aa23.36■■□□□ 1.33
VPS53-210ENST00000571456 PPP4R3AQ6IN85 833 aa23.36■■□□□ 1.33
VPS53-210ENST00000571456 PIK3AP1Q6ZUJ8 805 aa23.36■■□□□ 1.33
VPS53-210ENST00000571456 TLK2Q86UE8 772 aa23.36■■□□□ 1.33
VPS53-210ENST00000571456 OXER1Q8TDS5 423 aa23.36■■□□□ 1.33
VPS53-210ENST00000571456 BUD13Q9BRD0 619 aaKnown RBP eCLIP23.36■■□□□ 1.33
VPS53-210ENST00000571456 ADAMTS3O15072 1205 aa23.35■■□□□ 1.33
VPS53-210ENST00000571456 ZEB2O60315 1214 aa23.35■■□□□ 1.33
VPS53-210ENST00000571456 CPT1AP50416 773 aa23.35■■□□□ 1.33
VPS53-210ENST00000571456 NR5A1Q13285 461 aa23.35■■□□□ 1.33
VPS53-210ENST00000571456 NOSTRINQ8IVI9 506 aa23.35■■□□□ 1.33
VPS53-210ENST00000571456 PCSK9Q8NBP7 692 aaKnown RBP23.35■■□□□ 1.33
VPS53-210ENST00000571456 TSEN34Q9BSV6 310 aaKnown RBP23.35■■□□□ 1.33
VPS53-210ENST00000571456 LRFN3Q9BTN0 628 aa23.35■■□□□ 1.33
VPS53-210ENST00000571456 TSPYL2Q9H2G4 693 aaPredicted RBP23.35■■□□□ 1.33
VPS53-210ENST00000571456 RTEL1Q9NZ71 1219 aa23.35■■□□□ 1.33
VPS53-210ENST00000571456 CXXC1Q9P0U4 656 aaPredicted RBP23.35■■□□□ 1.33
VPS53-210ENST00000571456 DDX49Q9Y6V7 483 aaKnown RBP23.35■■□□□ 1.33
VPS53-210ENST00000571456 GRXCR1A8MXD5 290 aa23.34■■□□□ 1.33
VPS53-210ENST00000571456 BMP1P13497 986 aa23.34■■□□□ 1.33
VPS53-210ENST00000571456 GUCY1B3Q02153 619 aa23.34■■□□□ 1.33
VPS53-210ENST00000571456 INF2Q27J81 1249 aa23.34■■□□□ 1.33
VPS53-210ENST00000571456 Q4G0T1 1027 aa23.34■■□□□ 1.33
VPS53-210ENST00000571456 MBOAT7Q96N66 472 aa23.34■■□□□ 1.33
VPS53-210ENST00000571456 KCNH7Q9NS40 1196 aa23.34■■□□□ 1.33
VPS53-210ENST00000571456 NOL7Q9UMY1 257 aaKnown RBP23.34■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms