RNA–Protein interactions for RNA: ENST00000569336.2

CLN6-209, Transcript of CLN6, transmembrane ER protein, humanhuman

Gene CLN6, Length 557 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-209ENST00000569336 TBX21Q9UL17 535 aa11.2□□□□□ -0.62
CLN6-209ENST00000569336 ZNF215Q9UL58 517 aaPredicted RBP11.2□□□□□ -0.62
CLN6-209ENST00000569336 UBIAD1Q9Y5Z9 338 aa11.2□□□□□ -0.62
CLN6-209ENST00000569336 SOX1O00570 391 aaPredicted RBP11.19□□□□□ -0.62
CLN6-209ENST00000569336 ST18O60284 1047 aa11.19□□□□□ -0.62
CLN6-209ENST00000569336 CD4P01730 458 aa11.19□□□□□ -0.62
CLN6-209ENST00000569336 ZNF286BP0CG31 522 aa11.19□□□□□ -0.62
CLN6-209ENST00000569336 ITGB5P18084 799 aa11.19□□□□□ -0.62
CLN6-209ENST00000569336 MDM2Q00987 491 aaPredicted RBP11.19□□□□□ -0.62
CLN6-209ENST00000569336 SEMA3FQ13275 785 aa11.19□□□□□ -0.62
CLN6-209ENST00000569336 HSDL1Q3SXM5 330 aa11.19□□□□□ -0.62
CLN6-209ENST00000569336 CEP55Q53EZ4 464 aa11.19□□□□□ -0.62
CLN6-209ENST00000569336 JAKMIP3Q5VZ66 844 aa11.19□□□□□ -0.62
CLN6-209ENST00000569336 CYFIP1Q7L576 1253 aa11.19□□□□□ -0.62
CLN6-209ENST00000569336 NIPA1Q7RTP0 329 aa11.19□□□□□ -0.62
CLN6-209ENST00000569336 CCDC155Q8N6L0 562 aa11.19□□□□□ -0.62
CLN6-209ENST00000569336 ZFP91Q96JP5 570 aaPredicted RBP11.19□□□□□ -0.62
CLN6-209ENST00000569336 PGBD1Q96JS3 809 aa11.19□□□□□ -0.62
CLN6-209ENST00000569336 MXRA8Q9BRK3 442 aa11.19□□□□□ -0.62
CLN6-209ENST00000569336 SDF4Q9BRK5 362 aa11.19□□□□□ -0.62
CLN6-209ENST00000569336 PRO3102Q9H379 93 aa11.19□□□□□ -0.62
CLN6-209ENST00000569336 JADE2Q9NQC1 790 aa11.19□□□□□ -0.62
CLN6-209ENST00000569336 TMEM260Q9NX78 707 aa11.19□□□□□ -0.62
CLN6-209ENST00000569336 TCEAL9Q9UHQ7 104 aa11.19□□□□□ -0.62
CLN6-209ENST00000569336 PCDHA4Q9UN74 947 aa11.19□□□□□ -0.62
CLN6-209ENST00000569336 LIMCH1Q9UPQ0 1083 aa11.19□□□□□ -0.62
CLN6-209ENST00000569336 NOD1Q9Y239 953 aa11.19□□□□□ -0.62
CLN6-209ENST00000569336 CHD9Q3L8U1 2897 aa11.18□□□□□ -0.62
CLN6-209ENST00000569336 GRIN2DO15399 1336 aa11.18□□□□□ -0.62
CLN6-209ENST00000569336 NFASCO94856 1347 aa11.18□□□□□ -0.62
CLN6-209ENST00000569336 TRIM43BA6NCK2 446 aa11.18□□□□□ -0.62
CLN6-209ENST00000569336 B4GALT4O60513 344 aa11.18□□□□□ -0.62
CLN6-209ENST00000569336 PPFIA3O75145 1194 aa11.18□□□□□ -0.62
CLN6-209ENST00000569336 TIMP1P01033 207 aa11.18□□□□□ -0.62
CLN6-209ENST00000569336 CYP3A4P08684 503 aa11.18□□□□□ -0.62
CLN6-209ENST00000569336 KCNA2P16389 499 aa11.18□□□□□ -0.62
CLN6-209ENST00000569336 CHMP4BP1P59074 171 aa11.18□□□□□ -0.62
CLN6-209ENST00000569336 SP2Q02086 613 aa11.18□□□□□ -0.62
CLN6-209ENST00000569336 FPGSQ05932 587 aa11.18□□□□□ -0.62
CLN6-209ENST00000569336 RABEP1Q15276 862 aa11.18□□□□□ -0.62
CLN6-209ENST00000569336 ME3Q16798 604 aa11.18□□□□□ -0.62
CLN6-209ENST00000569336 NBPF20Q3BBV1 942 aa11.18□□□□□ -0.62
CLN6-209ENST00000569336 SH3RF1Q7Z6J0 888 aa11.18□□□□□ -0.62
CLN6-209ENST00000569336 SESTD1Q86VW0 696 aa11.18□□□□□ -0.62
CLN6-209ENST00000569336 TDHQ8IZJ6 230 aa11.18□□□□□ -0.62
CLN6-209ENST00000569336 C7orf31Q8N865 590 aa11.18□□□□□ -0.62
CLN6-209ENST00000569336 DAGLBQ8NCG7 672 aa11.18□□□□□ -0.62
CLN6-209ENST00000569336 TRIM43Q96BQ3 446 aaPredicted RBP11.18□□□□□ -0.62
CLN6-209ENST00000569336 ZSCAN31Q96LW9 406 aaPredicted RBP11.18□□□□□ -0.62
CLN6-209ENST00000569336 BRMS1Q9HCU9 246 aa11.18□□□□□ -0.62
CLN6-209ENST00000569336 JPH1Q9HDC5 661 aaPredicted RBP11.18□□□□□ -0.62
CLN6-209ENST00000569336 SH2B1Q9NRF2 756 aaPredicted RBP11.18□□□□□ -0.62
CLN6-209ENST00000569336 KCNH7Q9NS40 1196 aa11.18□□□□□ -0.62
CLN6-209ENST00000569336 ORC3Q9UBD5 711 aaPredicted RBP11.18□□□□□ -0.62
CLN6-209ENST00000569336 RALGAPA2Q2PPJ7 1873 aa11.17□□□□□ -0.62
CLN6-209ENST00000569336 SORBS3O60504 671 aa11.17□□□□□ -0.62
CLN6-209ENST00000569336 LGALS2P05162 132 aa11.17□□□□□ -0.62
CLN6-209ENST00000569336 PSEN2P49810 448 aa11.17□□□□□ -0.62
CLN6-209ENST00000569336 TRIM29Q14134 588 aa11.17□□□□□ -0.62
CLN6-209ENST00000569336 MFSD10Q14728 455 aa11.17□□□□□ -0.62
CLN6-209ENST00000569336 KIAA0753Q2KHM9 967 aa11.17□□□□□ -0.62
CLN6-209ENST00000569336 BLIDQ8IZY5 108 aa11.17□□□□□ -0.62
CLN6-209ENST00000569336 TMEM199Q8N511 208 aa11.17□□□□□ -0.62
CLN6-209ENST00000569336 DEFB123Q8N688 67 aa11.17□□□□□ -0.62
CLN6-209ENST00000569336 BADQ92934 168 aa11.17□□□□□ -0.62
CLN6-209ENST00000569336 GPR20Q99678 358 aa11.17□□□□□ -0.62
CLN6-209ENST00000569336 HIPK3Q9H422 1215 aa11.17□□□□□ -0.62
CLN6-209ENST00000569336 CHD7Q9P2D1 2997 aa11.16□□□□□ -0.62
CLN6-209ENST00000569336 EMSYQ7Z589 1322 aa11.16□□□□□ -0.62
CLN6-209ENST00000569336 H3BRB1 525 aa11.16□□□□□ -0.62
CLN6-209ENST00000569336 HAS3O00219 553 aa11.16□□□□□ -0.62
CLN6-209ENST00000569336 MEIS1O00470 390 aa11.16□□□□□ -0.62
CLN6-209ENST00000569336 PITPNM1O00562 1244 aa11.16□□□□□ -0.62
CLN6-209ENST00000569336 LARGE1O95461 756 aa11.16□□□□□ -0.62
CLN6-209ENST00000569336 TCF7P36402 384 aaPredicted RBP11.16□□□□□ -0.62
CLN6-209ENST00000569336 USP11P51784 963 aa11.16□□□□□ -0.62
CLN6-209ENST00000569336 SP4Q02446 784 aa11.16□□□□□ -0.62
CLN6-209ENST00000569336 PPIGQ13427 754 aaKnown RBP eCLIP11.16□□□□□ -0.62
CLN6-209ENST00000569336 BFSP2Q13515 415 aa11.16□□□□□ -0.62
CLN6-209ENST00000569336 PTGISQ16647 500 aa11.16□□□□□ -0.62
CLN6-209ENST00000569336 MFSD5Q6N075 450 aa11.16□□□□□ -0.62
CLN6-209ENST00000569336 KRT25Q7Z3Z0 450 aa11.16□□□□□ -0.62
CLN6-209ENST00000569336 PLA2G4DQ86XP0 818 aa11.16□□□□□ -0.62
CLN6-209ENST00000569336 NECAB1Q8N987 351 aa11.16□□□□□ -0.62
CLN6-209ENST00000569336 CRYGNQ8WXF5 182 aa11.16□□□□□ -0.62
CLN6-209ENST00000569336 KAT2BQ92831 832 aa11.16□□□□□ -0.62
CLN6-209ENST00000569336 KIF2CQ99661 725 aa11.16□□□□□ -0.62
CLN6-209ENST00000569336 LLPHQ9BRT6 129 aaKnown RBP11.16□□□□□ -0.62
CLN6-209ENST00000569336 PHF20Q9BVI0 1012 aa11.16□□□□□ -0.62
CLN6-209ENST00000569336 NOC4LQ9BVI4 516 aaKnown RBP11.16□□□□□ -0.62
CLN6-209ENST00000569336 PPP1R12CQ9BZL4 782 aa11.16□□□□□ -0.62
CLN6-209ENST00000569336 TRPV6Q9H1D0 765 aa11.16□□□□□ -0.62
CLN6-209ENST00000569336 TUT1Q9H6E5 874 aaKnown RBP11.16□□□□□ -0.62
CLN6-209ENST00000569336 TRMT13Q9NUP7 481 aaKnown RBP11.16□□□□□ -0.62
CLN6-209ENST00000569336 SLC9A2Q9UBY0 812 aa11.16□□□□□ -0.62
CLN6-209ENST00000569336 GTF2IRD1Q9UHL9 959 aa11.16□□□□□ -0.62
CLN6-209ENST00000569336 GTF3C3Q9Y5Q9 886 aa11.16□□□□□ -0.62
CLN6-209ENST00000569336 IGLV3-22A0A075B6J6 115 aa11.15□□□□□ -0.62
CLN6-209ENST00000569336 CCDC194A0A1B0GVG4 234 aa11.15□□□□□ -0.62
CLN6-209ENST00000569336 CTDNEP1O95476 244 aa11.15□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms