RNA–Protein interactions for RNA: ENST00000567495.6

CLN3-227, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-227ENST00000567495 ZNF365Q70YC5 407 aa21.4■■□□□ 1.02
CLN3-227ENST00000567495 TRIM22Q8IYM9 498 aa21.4■■□□□ 1.02
CLN3-227ENST00000567495 C16orf70Q9BSU1 422 aa21.4■■□□□ 1.02
CLN3-227ENST00000567495 ALG1Q9BT22 464 aa21.4■■□□□ 1.02
CLN3-227ENST00000567495 UPF3BQ9BZI7 483 aaKnown RBP21.4■■□□□ 1.02
CLN3-227ENST00000567495 ZMYND12Q9H0C1 365 aa21.4■■□□□ 1.02
CLN3-227ENST00000567495 HDAC6Q9UBN7 1215 aa21.4■■□□□ 1.02
CLN3-227ENST00000567495 SZT2Q5T011 3432 aa21.39■■□□□ 1.02
CLN3-227ENST00000567495 UMODL1Q5DID0 1318 aa21.39■■□□□ 1.01
CLN3-227ENST00000567495 H3BRB1 525 aa21.39■■□□□ 1.01
CLN3-227ENST00000567495 SORBS3O60504 671 aa21.39■■□□□ 1.01
CLN3-227ENST00000567495 SREBF1P36956 1147 aa21.39■■□□□ 1.01
CLN3-227ENST00000567495 RASIP1Q5U651 963 aa21.39■■□□□ 1.01
CLN3-227ENST00000567495 GDF6Q6KF10 455 aaPredicted RBP21.39■■□□□ 1.01
CLN3-227ENST00000567495 CPLX2Q6PUV4 134 aaKnown RBP21.39■■□□□ 1.01
CLN3-227ENST00000567495 CCDC148Q8NFR7 591 aa21.39■■□□□ 1.01
CLN3-227ENST00000567495 BICD2Q8TD16 824 aa21.39■■□□□ 1.01
CLN3-227ENST00000567495 HERVK_113Q902F9 699 aa21.39■■□□□ 1.01
CLN3-227ENST00000567495 GPR20Q99678 358 aa21.39■■□□□ 1.01
CLN3-227ENST00000567495 ANO3Q9BYT9 981 aa21.39■■□□□ 1.01
CLN3-227ENST00000567495 TUT1Q9H6E5 874 aaKnown RBP21.39■■□□□ 1.01
CLN3-227ENST00000567495 ZNF215Q9UL58 517 aaPredicted RBP21.39■■□□□ 1.01
CLN3-227ENST00000567495 CPLX1O14810 134 aa21.38■■□□□ 1.01
CLN3-227ENST00000567495 PARNO95453 639 aaKnown RBP21.38■■□□□ 1.01
CLN3-227ENST00000567495 LGALS2P05162 132 aa21.38■■□□□ 1.01
CLN3-227ENST00000567495 ACRP10323 421 aa21.38■■□□□ 1.01
CLN3-227ENST00000567495 KCNA2P16389 499 aa21.38■■□□□ 1.01
CLN3-227ENST00000567495 CLK2P49760 499 aaKnown RBP21.38■■□□□ 1.01
CLN3-227ENST00000567495 PKN1Q16512 942 aa21.38■■□□□ 1.01
CLN3-227ENST00000567495 AFAP1L1Q8TED9 768 aa21.38■■□□□ 1.01
CLN3-227ENST00000567495 PHKBQ93100 1093 aa21.38■■□□□ 1.01
CLN3-227ENST00000567495 MXRA8Q9BRK3 442 aa21.38■■□□□ 1.01
CLN3-227ENST00000567495 SLC26A6Q9BXS9 759 aa21.38■■□□□ 1.01
CLN3-227ENST00000567495 CCT2P78371 535 aaKnown RBP21.37■■□□□ 1.01
CLN3-227ENST00000567495 RBL2Q08999 1139 aa21.37■■□□□ 1.01
CLN3-227ENST00000567495 PTK7Q13308 1070 aa21.37■■□□□ 1.01
CLN3-227ENST00000567495 CEP55Q53EZ4 464 aa21.37■■□□□ 1.01
CLN3-227ENST00000567495 FAM177A1Q8N128 213 aaPredicted RBP21.37■■□□□ 1.01
CLN3-227ENST00000567495 REXO1Q8N1G1 1221 aaKnown RBP21.37■■□□□ 1.01
CLN3-227ENST00000567495 BCAS3Q9H6U6 928 aa21.37■■□□□ 1.01
CLN3-227ENST00000567495 NCOA5Q9HCD5 579 aaKnown RBP21.37■■□□□ 1.01
CLN3-227ENST00000567495 SH3GLB2Q9NR46 395 aa21.37■■□□□ 1.01
CLN3-227ENST00000567495 TMEM265A0A087WTH1 108 aa21.36■■□□□ 1.01
CLN3-227ENST00000567495 IQCF3P0C7M6 154 aa21.36■■□□□ 1.01
CLN3-227ENST00000567495 GNAT1P11488 350 aa21.36■■□□□ 1.01
CLN3-227ENST00000567495 ANKRD1Q15327 319 aa21.36■■□□□ 1.01
CLN3-227ENST00000567495 ZNF697Q5TEC3 545 aa21.36■■□□□ 1.01
CLN3-227ENST00000567495 NIPA1Q7RTP0 329 aa21.36■■□□□ 1.01
CLN3-227ENST00000567495 PPP1R13LQ8WUF5 828 aa21.36■■□□□ 1.01
CLN3-227ENST00000567495 IL17RAQ96F46 866 aa21.36■■□□□ 1.01
CLN3-227ENST00000567495 SCLYQ96I15 445 aa21.36■■□□□ 1.01
CLN3-227ENST00000567495 CTAGE1Q96RT6 745 aa21.36■■□□□ 1.01
CLN3-227ENST00000567495 KCNH7Q9NS40 1196 aa21.36■■□□□ 1.01
CLN3-227ENST00000567495 MTMR10Q9NXD2 777 aa21.36■■□□□ 1.01
CLN3-227ENST00000567495 MEIS1O00470 390 aa21.35■■□□□ 1.01
CLN3-227ENST00000567495 ATP9AO75110 1047 aa21.35■■□□□ 1.01
CLN3-227ENST00000567495 SELPP16109 830 aa21.35■■□□□ 1.01
CLN3-227ENST00000567495 ZNF76P36508 570 aa21.35■■□□□ 1.01
CLN3-227ENST00000567495 ARHGAP4P98171 946 aa21.35■■□□□ 1.01
CLN3-227ENST00000567495 SSRP1Q08945 709 aaKnown RBP21.35■■□□□ 1.01
CLN3-227ENST00000567495 SEPT1Q8WYJ6 367 aa21.35■■□□□ 1.01
CLN3-227ENST00000567495 SDF4Q9BRK5 362 aa21.35■■□□□ 1.01
CLN3-227ENST00000567495 C17orf102A2RUQ5 167 aa21.34■■□□□ 1.01
CLN3-227ENST00000567495 CDKL5O76039 1030 aa21.34■■□□□ 1.01
CLN3-227ENST00000567495 CYP3A4P08684 503 aa21.34■■□□□ 1.01
CLN3-227ENST00000567495 ACTN1P12814 892 aa21.34■■□□□ 1.01
CLN3-227ENST00000567495 SP4Q02446 784 aa21.34■■□□□ 1.01
CLN3-227ENST00000567495 JAKMIP3Q5VZ66 844 aa21.34■■□□□ 1.01
CLN3-227ENST00000567495 JPH1Q9HDC5 661 aaPredicted RBP21.34■■□□□ 1.01
CLN3-227ENST00000567495 TMEM260Q9NX78 707 aa21.34■■□□□ 1.01
CLN3-227ENST00000567495 NFASCO94856 1347 aa21.33■■□□□ 1.01
CLN3-227ENST00000567495 DEXIO95424 95 aa21.33■■□□□ 1.01
CLN3-227ENST00000567495 SMIM10L2AP0DMW4 78 aa21.33■■□□□ 1.01
CLN3-227ENST00000567495 SMIM10L2BP0DMW5 78 aa21.33■■□□□ 1.01
CLN3-227ENST00000567495 HOXC8P31273 242 aa21.33■■□□□ 1.01
CLN3-227ENST00000567495 UTP14CQ5TAP6 766 aaKnown RBP21.33■■□□□ 1.01
CLN3-227ENST00000567495 Q7L0L9 218 aa21.33■■□□□ 1.01
CLN3-227ENST00000567495 LRRC8DQ7L1W4 858 aa21.33■■□□□ 1.01
CLN3-227ENST00000567495 OTOP2Q7RTS6 562 aa21.33■■□□□ 1.01
CLN3-227ENST00000567495 SERINC5Q86VE9 423 aa21.33■■□□□ 1.01
CLN3-227ENST00000567495 PGBD1Q96JS3 809 aa21.33■■□□□ 1.01
CLN3-227ENST00000567495 CKBP12277 381 aa21.32■■□□□ 1
CLN3-227ENST00000567495 TCF7P36402 384 aaPredicted RBP21.32■■□□□ 1
CLN3-227ENST00000567495 DEFB128Q7Z7B8 93 aa21.32■■□□□ 1
CLN3-227ENST00000567495 CYP2W1Q8TAV3 490 aa21.32■■□□□ 1
CLN3-227ENST00000567495 CRYGNQ8WXF5 182 aa21.32■■□□□ 1
CLN3-227ENST00000567495 DHX38Q92620 1227 aaKnown RBP21.32■■□□□ 1
CLN3-227ENST00000567495 TNPO1Q92973 898 aaKnown RBP21.32■■□□□ 1
CLN3-227ENST00000567495 ATP6V0A1Q93050 837 aa21.32■■□□□ 1
CLN3-227ENST00000567495 C22orf23Q9BZE7 217 aa21.32■■□□□ 1
CLN3-227ENST00000567495 FTOQ9C0B1 505 aaKnown RBP eCLIP21.32■■□□□ 1
CLN3-227ENST00000567495 SLKQ9H2G2 1235 aaPredicted RBP21.32■■□□□ 1
CLN3-227ENST00000567495 SMARCAD1Q9H4L7 1026 aa21.32■■□□□ 1
CLN3-227ENST00000567495 ERAP1Q9NZ08 941 aa21.32■■□□□ 1
CLN3-227ENST00000567495 SLC9A2Q9UBY0 812 aa21.32■■□□□ 1
CLN3-227ENST00000567495 SLC4A7Q9Y6M7 1214 aa21.32■■□□□ 1
CLN3-227ENST00000567495 CAND2O75155 1236 aa21.31■■□□□ 1
CLN3-227ENST00000567495 NLRP5P59047 1200 aa21.31■■□□□ 1
CLN3-227ENST00000567495 RAB30Q15771 203 aa21.31■■□□□ 1
CLN3-227ENST00000567495 GALNT17Q6IS24 598 aa21.31■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms