RNA–Protein interactions for RNA: ENST00000567250.5

SF3B3-208, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 3

Gene SF3B3, Length 1,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-208ENST00000567250 A6NJR5 290 aa13.8□□□□□ -0.2
SF3B3-208ENST00000567250 CCNT1O60563 726 aaKnown RBP13.8□□□□□ -0.2
SF3B3-208ENST00000567250 MMP3P08254 477 aa13.8□□□□□ -0.2
SF3B3-208ENST00000567250 KCNA2P16389 499 aa13.8□□□□□ -0.2
SF3B3-208ENST00000567250 U2AF2P26368 475 aaKnown RBP eCLIP13.8□□□□□ -0.28e-12■□□□□ 8.8
SF3B3-208ENST00000567250 TRAPPC10P48553 1259 aa13.8□□□□□ -0.2
SF3B3-208ENST00000567250 ACLYP53396 1101 aa13.8□□□□□ -0.2
SF3B3-208ENST00000567250 BEX3Q00994 111 aa13.8□□□□□ -0.2
SF3B3-208ENST00000567250 DGKDQ16760 1214 aa13.8□□□□□ -0.2
SF3B3-208ENST00000567250 Q4G0T1 1027 aa13.8□□□□□ -0.2
SF3B3-208ENST00000567250 MYSM1Q5VVJ2 828 aa13.8□□□□□ -0.2
SF3B3-208ENST00000567250 CYFIP1Q7L576 1253 aa13.8□□□□□ -0.2
SF3B3-208ENST00000567250 PAWRQ96IZ0 340 aaKnown RBP13.8□□□□□ -0.2
SF3B3-208ENST00000567250 HTATIP2Q9BUP3 242 aa13.8□□□□□ -0.2
SF3B3-208ENST00000567250 AGO4Q9HCK5 861 aaKnown RBP13.8□□□□□ -0.2
SF3B3-208ENST00000567250 TBC1D22BQ9NU19 505 aa13.8□□□□□ -0.2
SF3B3-208ENST00000567250 PKD2L1Q9P0L9 805 aa13.8□□□□□ -0.2
SF3B3-208ENST00000567250 DDX25Q9UHL0 483 aaKnown RBP13.8□□□□□ -0.2
SF3B3-208ENST00000567250 CYP3A7-CYP3A51PA0A087WV96 503 aa13.79□□□□□ -0.2
SF3B3-208ENST00000567250 A0A1W2PQ45 241 aaPredicted RBP13.79□□□□□ -0.2
SF3B3-208ENST00000567250 A0A1W2PQY0 241 aa13.79□□□□□ -0.2
SF3B3-208ENST00000567250 MYADML2A6NDP7 307 aa13.79□□□□□ -0.2
SF3B3-208ENST00000567250 IPO5O00410 1097 aaKnown RBP13.79□□□□□ -0.2
SF3B3-208ENST00000567250 TDP2O95551 362 aa13.79□□□□□ -0.2
SF3B3-208ENST00000567250 ASGR1P07306 291 aa13.79□□□□□ -0.2
SF3B3-208ENST00000567250 CYP3A7P24462 503 aa13.79□□□□□ -0.2
SF3B3-208ENST00000567250 SP2Q02086 613 aa13.79□□□□□ -0.2
SF3B3-208ENST00000567250 KCNA10Q16322 511 aa13.79□□□□□ -0.2
SF3B3-208ENST00000567250 TMEM63BQ5T3F8 832 aa13.79□□□□□ -0.2
SF3B3-208ENST00000567250 CCSAPQ6IQ19 270 aaPredicted RBP13.79□□□□□ -0.2
SF3B3-208ENST00000567250 CYP2W1Q8TAV3 490 aa13.79□□□□□ -0.2
SF3B3-208ENST00000567250 DIS3LQ8TF46 1054 aaKnown RBP13.79□□□□□ -0.2
SF3B3-208ENST00000567250 AFG1LQ8WV93 481 aa13.79□□□□□ -0.2
SF3B3-208ENST00000567250 MBOAT7Q96N66 472 aa13.79□□□□□ -0.2
SF3B3-208ENST00000567250 KATNAL1Q9BW62 490 aa13.79□□□□□ -0.2
SF3B3-208ENST00000567250 SEZ6LQ9BYH1 1024 aa13.79□□□□□ -0.2
SF3B3-208ENST00000567250 STARD7Q9NQZ5 370 aa13.79□□□□□ -0.2
SF3B3-208ENST00000567250 SLC9A2Q9UBY0 812 aa13.79□□□□□ -0.2
SF3B3-208ENST00000567250 WDR81Q562E7 1941 aa13.79□□□□□ -0.2
SF3B3-208ENST00000567250 ALPK3Q96L96 1907 aa13.79□□□□□ -0.2
SF3B3-208ENST00000567250 SCN10AQ9Y5Y9 1956 aa13.79□□□□□ -0.2
SF3B3-208ENST00000567250 TBX3O15119 743 aa13.78□□□□□ -0.2
SF3B3-208ENST00000567250 CTAGE5O15320 804 aa13.78□□□□□ -0.2
SF3B3-208ENST00000567250 MYL3P08590 195 aa13.78□□□□□ -0.2
SF3B3-208ENST00000567250 ARP10275 920 aa13.78□□□□□ -0.2
SF3B3-208ENST00000567250 COL6A1P12109 1028 aa13.78□□□□□ -0.2
SF3B3-208ENST00000567250 MNX1P50219 401 aaPredicted RBP13.78□□□□□ -0.2
SF3B3-208ENST00000567250 KRT76Q01546 638 aa13.78□□□□□ -0.2
SF3B3-208ENST00000567250 HSDL1Q3SXM5 330 aa13.78□□□□□ -0.2
SF3B3-208ENST00000567250 RILPL1Q5EBL4 403 aa13.78□□□□□ -0.2
SF3B3-208ENST00000567250 EARS2Q5JPH6 523 aaKnown RBP13.78□□□□□ -0.2
SF3B3-208ENST00000567250 BRAPQ7Z569 592 aa13.78□□□□□ -0.2
SF3B3-208ENST00000567250 UBE2Q1Q7Z7E8 422 aa13.78□□□□□ -0.2
SF3B3-208ENST00000567250 LENG9Q96B70 501 aa13.78□□□□□ -0.2
SF3B3-208ENST00000567250 RIT2Q99578 217 aa13.78□□□□□ -0.2
SF3B3-208ENST00000567250 MTG1Q9BT17 334 aaPredicted RBP13.78□□□□□ -0.2
SF3B3-208ENST00000567250 TEKT3Q9BXF9 490 aa13.78□□□□□ -0.2
SF3B3-208ENST00000567250 SENP6Q9GZR1 1112 aaPredicted RBP13.78□□□□□ -0.2
SF3B3-208ENST00000567250 ZNF215Q9UL58 517 aaPredicted RBP13.78□□□□□ -0.2
SF3B3-208ENST00000567250 ELP1O95163 1332 aa13.78□□□□□ -0.2
SF3B3-208ENST00000567250 A0A0U1RQG5 324 aaPredicted RBP13.77□□□□□ -0.21
SF3B3-208ENST00000567250 FAM205CA6NFA0 338 aa13.77□□□□□ -0.21
SF3B3-208ENST00000567250 KIF28PB7ZC32 967 aa13.77□□□□□ -0.21
SF3B3-208ENST00000567250 MSH4O15457 936 aa13.77□□□□□ -0.21
SF3B3-208ENST00000567250 MARCH6O60337 910 aa13.77□□□□□ -0.21
SF3B3-208ENST00000567250 SORBS3O60504 671 aa13.77□□□□□ -0.21
SF3B3-208ENST00000567250 NEMFO60524 1076 aa13.77□□□□□ -0.21
SF3B3-208ENST00000567250 GAS7O60861 476 aa13.77□□□□□ -0.21
SF3B3-208ENST00000567250 ATP9AO75110 1047 aa13.77□□□□□ -0.21
SF3B3-208ENST00000567250 PPFIA4O75335 1185 aa13.77□□□□□ -0.21
SF3B3-208ENST00000567250 BAG4O95429 457 aaKnown RBP13.77□□□□□ -0.21
SF3B3-208ENST00000567250 HOXD8P13378 290 aaPredicted RBP13.77□□□□□ -0.21
SF3B3-208ENST00000567250 SYT1P21579 422 aa13.77□□□□□ -0.21
SF3B3-208ENST00000567250 PTGS1P23219 599 aa13.77□□□□□ -0.21
SF3B3-208ENST00000567250 MYH9P35579 1960 aaKnown RBP13.77□□□□□ -0.21
SF3B3-208ENST00000567250 ANP32AP39687 249 aaKnown RBP13.77□□□□□ -0.21
SF3B3-208ENST00000567250 PURAQ00577 322 aaKnown RBP13.77□□□□□ -0.21
SF3B3-208ENST00000567250 SP4Q02446 784 aa13.77□□□□□ -0.21
SF3B3-208ENST00000567250 LRCH2Q5VUJ6 765 aa13.77□□□□□ -0.21
SF3B3-208ENST00000567250 MROH7Q68CQ1 1323 aa13.77□□□□□ -0.21
SF3B3-208ENST00000567250 SMAP1Q8IYB5 467 aaPredicted RBP13.77□□□□□ -0.21
SF3B3-208ENST00000567250 SLFN12Q8IYM2 578 aa13.77□□□□□ -0.21
SF3B3-208ENST00000567250 FAM20AQ96MK3 541 aa13.77□□□□□ -0.21
SF3B3-208ENST00000567250 DNAH12Q6ZR08 3092 aa13.77□□□□□ -0.21
SF3B3-208ENST00000567250 EMSYQ7Z589 1322 aa13.76□□□□□ -0.21
SF3B3-208ENST00000567250 DDX39AO00148 427 aaKnown RBP13.76□□□□□ -0.21
SF3B3-208ENST00000567250 STX6O43752 255 aa13.76□□□□□ -0.21
SF3B3-208ENST00000567250 SLC37A4O43826 429 aa13.76□□□□□ -0.21
SF3B3-208ENST00000567250 F2P00734 622 aa13.76□□□□□ -0.21
SF3B3-208ENST00000567250 SFNP31947 248 aa13.76□□□□□ -0.21
SF3B3-208ENST00000567250 RGS19P49795 217 aa13.76□□□□□ -0.21
SF3B3-208ENST00000567250 ITGB3BPQ13352 177 aaPredicted RBP13.76□□□□□ -0.21
SF3B3-208ENST00000567250 ZNF746Q6NUN9 644 aaPredicted RBP13.76□□□□□ -0.21
SF3B3-208ENST00000567250 CXCL17Q6UXB2 119 aa13.76□□□□□ -0.21
SF3B3-208ENST00000567250 SEPT1Q8WYJ6 367 aa13.76□□□□□ -0.21
SF3B3-208ENST00000567250 SLC5A5Q92911 643 aa13.76□□□□□ -0.21
SF3B3-208ENST00000567250 FERMT2Q96AC1 680 aa13.76□□□□□ -0.21
SF3B3-208ENST00000567250 VTI1AQ96AJ9 217 aa13.76□□□□□ -0.21
SF3B3-208ENST00000567250 GPR20Q99678 358 aa13.76□□□□□ -0.21
SF3B3-208ENST00000567250 EDIL3O43854 480 aa13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms