RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 CPT1AP50416 773 aa22.23■■□□□ 1.15
CLN3-225ENST00000566824 PURAQ00577 322 aaKnown RBP22.23■■□□□ 1.15
CLN3-225ENST00000566824 SLC39A5Q6ZMH5 540 aa22.23■■□□□ 1.15
CLN3-225ENST00000566824 PPTC7Q8NI37 304 aa22.23■■□□□ 1.15
CLN3-225ENST00000566824 MBOAT7Q96N66 472 aa22.23■■□□□ 1.15
CLN3-225ENST00000566824 SENP7Q9BQF6 1050 aa22.23■■□□□ 1.15
CLN3-225ENST00000566824 MLXIPQ9HAP2 919 aa22.23■■□□□ 1.15
CLN3-225ENST00000566824 BRMS1Q9HCU9 246 aa22.23■■□□□ 1.15
CLN3-225ENST00000566824 CYP3A7-CYP3A51PA0A087WV96 503 aa22.22■■□□□ 1.15
CLN3-225ENST00000566824 DHX15O43143 795 aaKnown RBP22.22■■□□□ 1.15
CLN3-225ENST00000566824 SLC37A4O43826 429 aa22.22■■□□□ 1.15
CLN3-225ENST00000566824 CYP3A7P24462 503 aa22.22■■□□□ 1.15
CLN3-225ENST00000566824 NEDD9Q14511 834 aa22.22■■□□□ 1.15
CLN3-225ENST00000566824 LETM2Q2VYF4 491 aa22.22■■□□□ 1.15
CLN3-225ENST00000566824 METTL7BQ6UX53 244 aa22.22■■□□□ 1.15
CLN3-225ENST00000566824 HSCBQ8IWL3 235 aa22.22■■□□□ 1.15
CLN3-225ENST00000566824 CDHR1Q96JP9 859 aa22.22■■□□□ 1.15
CLN3-225ENST00000566824 GPR20Q99678 358 aa22.22■■□□□ 1.15
CLN3-225ENST00000566824 MSH4O15457 936 aa22.21■■□□□ 1.15
CLN3-225ENST00000566824 ZNF286BP0CG31 522 aa22.21■■□□□ 1.15
CLN3-225ENST00000566824 NEK8Q86SG6 692 aa22.21■■□□□ 1.15
CLN3-225ENST00000566824 KAT2BQ92831 832 aa22.21■■□□□ 1.15
CLN3-225ENST00000566824 GSTTP1A0A1W2PQM5 241 aa22.2■■□□□ 1.14
CLN3-225ENST00000566824 DDX39AO00148 427 aaKnown RBP22.2■■□□□ 1.14
CLN3-225ENST00000566824 MAFGO15525 162 aa22.2■■□□□ 1.14
CLN3-225ENST00000566824 HOXD8P13378 290 aaPredicted RBP22.2■■□□□ 1.14
CLN3-225ENST00000566824 MLLT1Q03111 559 aaPredicted RBP22.2■■□□□ 1.14
CLN3-225ENST00000566824 SAFBQ15424 915 aaKnown RBP eCLIP22.2■■□□□ 1.14
CLN3-225ENST00000566824 INTS4Q96HW7 963 aaKnown RBP22.2■■□□□ 1.14
CLN3-225ENST00000566824 STARD7Q9NQZ5 370 aa22.2■■□□□ 1.14
CLN3-225ENST00000566824 CEP290O15078 2479 aa22.2■■□□□ 1.14
CLN3-225ENST00000566824 WDR81Q562E7 1941 aa22.19■■□□□ 1.14
CLN3-225ENST00000566824 IPO5O00410 1097 aaKnown RBP22.19■■□□□ 1.14
CLN3-225ENST00000566824 ZEB2O60315 1214 aa22.19■■□□□ 1.14
CLN3-225ENST00000566824 CCNE2O96020 404 aa22.19■■□□□ 1.14
CLN3-225ENST00000566824 SNX17Q15036 470 aa22.19■■□□□ 1.14
CLN3-225ENST00000566824 TRIM60Q495X7 471 aa22.19■■□□□ 1.14
CLN3-225ENST00000566824 Q4G0T1 1027 aa22.19■■□□□ 1.14
CLN3-225ENST00000566824 LARP1BQ659C4 914 aaKnown RBP22.19■■□□□ 1.14
CLN3-225ENST00000566824 SPRYD3Q8NCJ5 442 aa22.19■■□□□ 1.14
CLN3-225ENST00000566824 VTI1AQ96AJ9 217 aa22.19■■□□□ 1.14
CLN3-225ENST00000566824 GLT1D1Q96MS3 346 aa22.19■■□□□ 1.14
CLN3-225ENST00000566824 ZNF577Q9BSK1 485 aa22.19■■□□□ 1.14
CLN3-225ENST00000566824 FOXP1Q9H334 677 aaPredicted RBP22.19■■□□□ 1.14
CLN3-225ENST00000566824 POLR3EQ9NVU0 708 aa22.19■■□□□ 1.14
CLN3-225ENST00000566824 NFASCO94856 1347 aa22.19■■□□□ 1.14
CLN3-225ENST00000566824 CCNT1O60563 726 aaKnown RBP22.18■■□□□ 1.14
CLN3-225ENST00000566824 U2AF2P26368 475 aaKnown RBP eCLIP22.18■■□□□ 1.14
CLN3-225ENST00000566824 RTP1P59025 263 aa22.18■■□□□ 1.14
CLN3-225ENST00000566824 DGKDQ16760 1214 aa22.18■■□□□ 1.14
CLN3-225ENST00000566824 TRIM50Q86XT4 487 aa22.18■■□□□ 1.14
CLN3-225ENST00000566824 C16orf70Q9BSU1 422 aa22.18■■□□□ 1.14
CLN3-225ENST00000566824 MTG1Q9BT17 334 aaPredicted RBP22.18■■□□□ 1.14
CLN3-225ENST00000566824 DDX25Q9UHL0 483 aaKnown RBP22.18■■□□□ 1.14
CLN3-225ENST00000566824 KIF3AQ9Y496 699 aa22.18■■□□□ 1.14
CLN3-225ENST00000566824 ELP1O95163 1332 aa22.18■■□□□ 1.14
CLN3-225ENST00000566824 ATP2B1P20020 1258 aa22.17■■□□□ 1.14
CLN3-225ENST00000566824 CDK7P50613 346 aa22.17■■□□□ 1.14
CLN3-225ENST00000566824 CHMP4BP1P59074 171 aa22.17■■□□□ 1.14
CLN3-225ENST00000566824 SETQ01105 290 aaPredicted RBP22.17■■□□□ 1.14
CLN3-225ENST00000566824 BRDTQ58F21 947 aaPredicted RBP22.17■■□□□ 1.14
CLN3-225ENST00000566824 PPP4R3AQ6IN85 833 aa22.17■■□□□ 1.14
CLN3-225ENST00000566824 MOXD1Q6UVY6 613 aa22.17■■□□□ 1.14
CLN3-225ENST00000566824 NOSTRINQ8IVI9 506 aa22.17■■□□□ 1.14
CLN3-225ENST00000566824 SLC43A3Q8NBI5 491 aa22.17■■□□□ 1.14
CLN3-225ENST00000566824 GIMAP8Q8ND71 665 aaPredicted RBP22.17■■□□□ 1.14
CLN3-225ENST00000566824 ETNPPLQ8TBG4 499 aa22.17■■□□□ 1.14
CLN3-225ENST00000566824 SLC5A5Q92911 643 aa22.17■■□□□ 1.14
CLN3-225ENST00000566824 JPH1Q9HDC5 661 aaPredicted RBP22.17■■□□□ 1.14
CLN3-225ENST00000566824 SLC9A2Q9UBY0 812 aa22.17■■□□□ 1.14
CLN3-225ENST00000566824 ATP11BQ9Y2G3 1177 aa22.17■■□□□ 1.14
CLN3-225ENST00000566824 NOP56O00567 594 aaKnown RBP22.16■■□□□ 1.14
CLN3-225ENST00000566824 PPFIA4O75335 1185 aa22.16■■□□□ 1.14
CLN3-225ENST00000566824 LGALS2P05162 132 aa22.16■■□□□ 1.14
CLN3-225ENST00000566824 ITGA7Q13683 1181 aa22.16■■□□□ 1.14
CLN3-225ENST00000566824 NBR1Q14596 966 aa22.16■■□□□ 1.14
CLN3-225ENST00000566824 NBPF20Q3BBV1 942 aa22.16■■□□□ 1.14
CLN3-225ENST00000566824 UTP14CQ5TAP6 766 aaKnown RBP22.16■■□□□ 1.14
CLN3-225ENST00000566824 MCTP1Q6DN14 999 aa22.16■■□□□ 1.14
CLN3-225ENST00000566824 POTEDQ86YR6 584 aa22.16■■□□□ 1.14
CLN3-225ENST00000566824 DPF3Q92784 378 aa22.16■■□□□ 1.14
CLN3-225ENST00000566824 PCYT2Q99447 389 aa22.16■■□□□ 1.14
CLN3-225ENST00000566824 SDF4Q9BRK5 362 aa22.16■■□□□ 1.14
CLN3-225ENST00000566824 HTATIP2Q9BUP3 242 aa22.16■■□□□ 1.14
CLN3-225ENST00000566824 TRIP12Q14669 1992 aaPredicted RBP22.16■■□□□ 1.14
CLN3-225ENST00000566824 A0A0U1RQG5 324 aaPredicted RBP22.15■■□□□ 1.14
CLN3-225ENST00000566824 H3BQV1 296 aa22.15■■□□□ 1.14
CLN3-225ENST00000566824 KPNA6O60684 536 aa22.15■■□□□ 1.14
CLN3-225ENST00000566824 CABYRO75952 493 aa22.15■■□□□ 1.14
CLN3-225ENST00000566824 TCF7P36402 384 aaPredicted RBP22.15■■□□□ 1.14
CLN3-225ENST00000566824 TOB1P50616 345 aaPredicted RBP22.15■■□□□ 1.14
CLN3-225ENST00000566824 ACTR2P61160 394 aa22.15■■□□□ 1.14
CLN3-225ENST00000566824 TLE2Q04725 743 aa22.15■■□□□ 1.14
CLN3-225ENST00000566824 C7orf61Q8IZ16 206 aa22.15■■□□□ 1.14
CLN3-225ENST00000566824 HAS1Q92839 578 aa22.15■■□□□ 1.14
CLN3-225ENST00000566824 ARVCFO00192 962 aa22.14■■□□□ 1.14
CLN3-225ENST00000566824 HAS3O00219 553 aa22.14■■□□□ 1.14
CLN3-225ENST00000566824 F2P00734 622 aa22.14■■□□□ 1.14
CLN3-225ENST00000566824 SYT1P21579 422 aa22.14■■□□□ 1.14
CLN3-225ENST00000566824 PSEN2P49810 448 aa22.14■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms