RNA–Protein interactions for RNA: ENST00000566808.2

CDH3-205, Transcript of cadherin 3, humanhuman

TSL 5

Gene CDH3, Length 573 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-205ENST00000566808 BMPR1AP36894 532 aa19.68■□□□□ 0.74
CDH3-205ENST00000566808 GPATCH4Q5T3I0 446 aaKnown RBP19.68■□□□□ 0.74
CDH3-205ENST00000566808 MCF2L2Q86YR7 1114 aa19.68■□□□□ 0.74
CDH3-205ENST00000566808 SMRP1Q8NCR6 262 aa19.68■□□□□ 0.74
CDH3-205ENST00000566808 CLP1Q92989 425 aaKnown RBP19.68■□□□□ 0.74
CDH3-205ENST00000566808 MSLNLQ96KJ4 702 aa19.68■□□□□ 0.74
CDH3-205ENST00000566808 TOMM22Q9NS69 142 aa19.68■□□□□ 0.74
CDH3-205ENST00000566808 LINC01565O15544 149 aa19.67■□□□□ 0.74
CDH3-205ENST00000566808 CTSHP09668 335 aa19.67■□□□□ 0.74
CDH3-205ENST00000566808 EIF2AK2P19525 551 aaKnown RBP19.67■□□□□ 0.74
CDH3-205ENST00000566808 GTF2F1P35269 517 aaKnown RBP eCLIP19.67■□□□□ 0.74
CDH3-205ENST00000566808 SIGLEC14Q08ET2 396 aa19.67■□□□□ 0.74
CDH3-205ENST00000566808 CBX2Q14781 532 aaPredicted RBP19.67■□□□□ 0.74
CDH3-205ENST00000566808 ARHGEF16Q5VV41 709 aa19.67■□□□□ 0.74
CDH3-205ENST00000566808 RC3H2Q9HBD1 1191 aaKnown RBP19.67■□□□□ 0.74
CDH3-205ENST00000566808 TTC3P53804 2025 aa19.67■□□□□ 0.74
CDH3-205ENST00000566808 ADAM15Q13444 863 aa19.66■□□□□ 0.74
CDH3-205ENST00000566808 CDC37Q16543 378 aaPredicted RBP19.66■□□□□ 0.74
CDH3-205ENST00000566808 HSDL1Q3SXM5 330 aa19.66■□□□□ 0.74
CDH3-205ENST00000566808 RRP12Q5JTH9 1297 aaKnown RBP19.66■□□□□ 0.74
CDH3-205ENST00000566808 MYSM1Q5VVJ2 828 aa19.66■□□□□ 0.74
CDH3-205ENST00000566808 ATOH1Q92858 354 aaPredicted RBP19.66■□□□□ 0.74
CDH3-205ENST00000566808 SPATA33Q96N06 139 aa19.66■□□□□ 0.74
CDH3-205ENST00000566808 PLVAPQ9BX97 442 aa19.66■□□□□ 0.74
CDH3-205ENST00000566808 IGFLR1Q9H665 355 aa19.66■□□□□ 0.74
CDH3-205ENST00000566808 PXMP2Q9NR77 195 aa19.66■□□□□ 0.74
CDH3-205ENST00000566808 TTC41PQ6P2S7 1318 aa19.66■□□□□ 0.74
CDH3-205ENST00000566808 CCDC171Q6TFL3 1326 aa19.66■□□□□ 0.74
CDH3-205ENST00000566808 KAT6AQ92794 2004 aa19.66■□□□□ 0.74
CDH3-205ENST00000566808 ZNF292O60281 2723 aa19.65■□□□□ 0.74
CDH3-205ENST00000566808 NR3C2P08235 984 aa19.65■□□□□ 0.74
CDH3-205ENST00000566808 SMIM10L2AP0DMW4 78 aa19.65■□□□□ 0.74
CDH3-205ENST00000566808 SMIM10L2BP0DMW5 78 aa19.65■□□□□ 0.74
CDH3-205ENST00000566808 VCPP55072 806 aaKnown RBP19.65■□□□□ 0.74
CDH3-205ENST00000566808 COASYQ13057 564 aa19.65■□□□□ 0.74
CDH3-205ENST00000566808 CELF3Q5SZQ8 465 aaKnown RBP19.65■□□□□ 0.74
CDH3-205ENST00000566808 KCNV1Q6PIU1 500 aa19.65■□□□□ 0.74
CDH3-205ENST00000566808 TBC1D5Q92609 795 aa19.65■□□□□ 0.74
CDH3-205ENST00000566808 TTC14Q96N46 770 aa19.65■□□□□ 0.74
CDH3-205ENST00000566808 C16orf70Q9BSU1 422 aa19.65■□□□□ 0.74
CDH3-205ENST00000566808 DMDP11532 3685 aa19.65■□□□□ 0.74
CDH3-205ENST00000566808 PROB1E7EW31 1015 aa19.64■□□□□ 0.73
CDH3-205ENST00000566808 TREHO43280 583 aa19.64■□□□□ 0.73
CDH3-205ENST00000566808 EFHBQ8N7U6 833 aa19.64■□□□□ 0.73
CDH3-205ENST00000566808 OSBPL7Q9BZF2 842 aa19.64■□□□□ 0.73
CDH3-205ENST00000566808 H3BRB1 525 aa19.63■□□□□ 0.73
CDH3-205ENST00000566808 CSPG5O95196 566 aa19.63■□□□□ 0.73
CDH3-205ENST00000566808 GGPS1O95749 300 aa19.63■□□□□ 0.73
CDH3-205ENST00000566808 NUBP1P53384 320 aa19.63■□□□□ 0.73
CDH3-205ENST00000566808 ALX1Q15699 326 aa19.63■□□□□ 0.73
CDH3-205ENST00000566808 P2RX5Q93086 422 aa19.63■□□□□ 0.73
CDH3-205ENST00000566808 ASIC4Q96FT7 647 aa19.63■□□□□ 0.73
CDH3-205ENST00000566808 TUT1Q9H6E5 874 aaKnown RBP19.63■□□□□ 0.73
CDH3-205ENST00000566808 CLEC1BQ9P126 229 aa19.63■□□□□ 0.73
CDH3-205ENST00000566808 MRPL11Q9Y3B7 192 aaKnown RBP19.63■□□□□ 0.73
CDH3-205ENST00000566808 HSPD1P10809 573 aaKnown RBP19.62■□□□□ 0.73
CDH3-205ENST00000566808 UBA1P22314 1058 aaKnown RBP19.62■□□□□ 0.73
CDH3-205ENST00000566808 RRP1P56182 461 aaKnown RBP19.62■□□□□ 0.73
CDH3-205ENST00000566808 BTG3Q14201 252 aaPredicted RBP19.62■□□□□ 0.73
CDH3-205ENST00000566808 VPS53Q5VIR6 699 aa19.62■□□□□ 0.73
CDH3-205ENST00000566808 ERMP1Q7Z2K6 904 aa19.62■□□□□ 0.73
CDH3-205ENST00000566808 PI4K2BQ8TCG2 481 aa19.62■□□□□ 0.73
CDH3-205ENST00000566808 PHF7Q9BWX1 381 aaPredicted RBP19.62■□□□□ 0.73
CDH3-205ENST00000566808 CPVLQ9H3G5 476 aa19.62■□□□□ 0.73
CDH3-205ENST00000566808 USP15Q9Y4E8 981 aaPredicted RBP19.62■□□□□ 0.73
CDH3-205ENST00000566808 LAMA4Q16363 1823 aa19.62■□□□□ 0.73
CDH3-205ENST00000566808 DOCK5Q9H7D0 1870 aa19.61■□□□□ 0.73
CDH3-205ENST00000566808 PLXNA4Q9HCM2 1894 aa19.61■□□□□ 0.73
CDH3-205ENST00000566808 RGS20O76081 388 aa19.61■□□□□ 0.73
CDH3-205ENST00000566808 LGALS2P05162 132 aa19.61■□□□□ 0.73
CDH3-205ENST00000566808 GOLGA8HP0CJ92 632 aa19.61■□□□□ 0.73
CDH3-205ENST00000566808 GNAT1P11488 350 aa19.61■□□□□ 0.73
CDH3-205ENST00000566808 AVPR2P30518 371 aa19.61■□□□□ 0.73
CDH3-205ENST00000566808 CAMK1Q14012 370 aa19.61■□□□□ 0.73
CDH3-205ENST00000566808 FAM26DQ5JW98 314 aa19.61■□□□□ 0.73
CDH3-205ENST00000566808 MIER1Q8N108 512 aa19.61■□□□□ 0.73
CDH3-205ENST00000566808 RNPEPQ9H4A4 650 aa19.61■□□□□ 0.73
CDH3-205ENST00000566808 PLAGL2Q9UPG8 496 aa19.61■□□□□ 0.73
CDH3-205ENST00000566808 ZMYM6O95789 1325 aa19.6■□□□□ 0.73
CDH3-205ENST00000566808 SORBS3O60504 671 aa19.6■□□□□ 0.73
CDH3-205ENST00000566808 TGFB3P10600 412 aa19.6■□□□□ 0.73
CDH3-205ENST00000566808 PCP11498 1178 aaKnown RBP19.6■□□□□ 0.73
CDH3-205ENST00000566808 ICAM3P32942 547 aa19.6■□□□□ 0.73
CDH3-205ENST00000566808 HNRNPUQ00839 825 aaKnown RBP eCLIP19.6■□□□□ 0.73
CDH3-205ENST00000566808 NAALADL2Q58DX5 795 aa19.6■□□□□ 0.73
CDH3-205ENST00000566808 ZNF689Q96CS4 500 aaPredicted RBP19.6■□□□□ 0.73
CDH3-205ENST00000566808 PDCD2LQ9BRP1 358 aa19.6■□□□□ 0.73
CDH3-205ENST00000566808 UBA5Q9GZZ9 404 aa19.6■□□□□ 0.73
CDH3-205ENST00000566808 GLP2RO95838 553 aa19.59■□□□□ 0.73
CDH3-205ENST00000566808 CFBP00751 764 aa19.59■□□□□ 0.73
CDH3-205ENST00000566808 HSD17B4P51659 736 aa19.59■□□□□ 0.73
CDH3-205ENST00000566808 GHRHRQ02643 423 aa19.59■□□□□ 0.73
CDH3-205ENST00000566808 PTPN21Q16825 1174 aa19.59■□□□□ 0.73
CDH3-205ENST00000566808 QRICH1Q2TAL8 776 aa19.59■□□□□ 0.73
CDH3-205ENST00000566808 ADGRD2Q7Z7M1 963 aa19.59■□□□□ 0.73
CDH3-205ENST00000566808 ADGRF4Q8IZF3 695 aa19.59■□□□□ 0.73
CDH3-205ENST00000566808 MLXIPQ9HAP2 919 aa19.59■□□□□ 0.73
CDH3-205ENST00000566808 CACNA1BQ00975 2339 aa19.59■□□□□ 0.73
CDH3-205ENST00000566808 DMXL1Q9Y485 3027 aa19.58■□□□□ 0.73
CDH3-205ENST00000566808 PRR23AA6NEV1 266 aa19.58■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms