RNA–Protein interactions for RNA: ENST00000566040.1

CLN3-220, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-220ENST00000566040 B4DLN1 442 aa11.25□□□□□ -0.61
CLN3-220ENST00000566040 ARVCFO00192 962 aa11.25□□□□□ -0.61
CLN3-220ENST00000566040 B4GALT4O60513 344 aa11.25□□□□□ -0.61
CLN3-220ENST00000566040 TDP2O95551 362 aa11.25□□□□□ -0.61
CLN3-220ENST00000566040 CEP55Q53EZ4 464 aa11.25□□□□□ -0.61
CLN3-220ENST00000566040 METTL7BQ6UX53 244 aa11.25□□□□□ -0.61
CLN3-220ENST00000566040 B3GNT9Q6UX72 402 aa11.25□□□□□ -0.61
CLN3-220ENST00000566040 CYFIP1Q7L576 1253 aa11.25□□□□□ -0.61
CLN3-220ENST00000566040 NIPA1Q7RTP0 329 aa11.25□□□□□ -0.61
CLN3-220ENST00000566040 FAM177A1Q8N128 213 aaPredicted RBP11.25□□□□□ -0.61
CLN3-220ENST00000566040 PCSK9Q8NBP7 692 aaKnown RBP11.25□□□□□ -0.61
CLN3-220ENST00000566040 WNT8BQ93098 351 aa11.25□□□□□ -0.61
CLN3-220ENST00000566040 GJA10Q969M2 543 aa11.25□□□□□ -0.61
CLN3-220ENST00000566040 UIMC1Q96RL1 719 aa11.25□□□□□ -0.61
CLN3-220ENST00000566040 MPHOSPH6Q99547 160 aaKnown RBP11.25□□□□□ -0.61
CLN3-220ENST00000566040 GDF15Q99988 308 aa11.25□□□□□ -0.61
CLN3-220ENST00000566040 STARD7Q9NQZ5 370 aa11.25□□□□□ -0.61
CLN3-220ENST00000566040 ATP11BQ9Y2G3 1177 aa11.25□□□□□ -0.61
CLN3-220ENST00000566040 MICAL3Q7RTP6 2002 aa11.25□□□□□ -0.61
CLN3-220ENST00000566040 CHD7Q9P2D1 2997 aa11.24□□□□□ -0.61
CLN3-220ENST00000566040 CYP3A7-CYP3A51PA0A087WV96 503 aa11.24□□□□□ -0.61
CLN3-220ENST00000566040 A0A0U1RQG5 324 aaPredicted RBP11.24□□□□□ -0.61
CLN3-220ENST00000566040 KIF28PB7ZC32 967 aa11.24□□□□□ -0.61
CLN3-220ENST00000566040 KIAA0355O15063 1070 aa11.24□□□□□ -0.61
CLN3-220ENST00000566040 SLC37A4O43826 429 aa11.24□□□□□ -0.61
CLN3-220ENST00000566040 EVI5O60447 810 aa11.24□□□□□ -0.61
CLN3-220ENST00000566040 CDKL5O76039 1030 aa11.24□□□□□ -0.61
CLN3-220ENST00000566040 MMP1P03956 469 aa11.24□□□□□ -0.61
CLN3-220ENST00000566040 LGALS2P05162 132 aa11.24□□□□□ -0.61
CLN3-220ENST00000566040 MYL3P08590 195 aa11.24□□□□□ -0.61
CLN3-220ENST00000566040 CYP3A7P24462 503 aa11.24□□□□□ -0.61
CLN3-220ENST00000566040 GNA11P29992 359 aa11.24□□□□□ -0.61
CLN3-220ENST00000566040 CPT1AP50416 773 aa11.24□□□□□ -0.61
CLN3-220ENST00000566040 FOSBP53539 338 aa11.24□□□□□ -0.61
CLN3-220ENST00000566040 EPHB4P54760 987 aa11.24□□□□□ -0.61
CLN3-220ENST00000566040 NLRP5P59047 1200 aa11.24□□□□□ -0.61
CLN3-220ENST00000566040 AKAP17AQ02040 695 aaKnown RBP11.24□□□□□ -0.61
CLN3-220ENST00000566040 MTMR1Q13613 665 aa11.24□□□□□ -0.61
CLN3-220ENST00000566040 ITGA7Q13683 1181 aa11.24□□□□□ -0.61
CLN3-220ENST00000566040 NBPF20Q3BBV1 942 aa11.24□□□□□ -0.61
CLN3-220ENST00000566040 KRT40Q6A162 431 aa11.24□□□□□ -0.61
CLN3-220ENST00000566040 TBCKQ8TEA7 893 aa11.24□□□□□ -0.61
CLN3-220ENST00000566040 CCDC12Q8WUD4 166 aaPredicted RBP11.24□□□□□ -0.61
CLN3-220ENST00000566040 DHX38Q92620 1227 aaKnown RBP11.24□□□□□ -0.61
CLN3-220ENST00000566040 DPF3Q92784 378 aa11.24□□□□□ -0.61
CLN3-220ENST00000566040 GLT1D1Q96MS3 346 aa11.24□□□□□ -0.61
CLN3-220ENST00000566040 TOX2Q96NM4 488 aa11.24□□□□□ -0.61
CLN3-220ENST00000566040 LLPHQ9BRT6 129 aaKnown RBP11.24□□□□□ -0.61
CLN3-220ENST00000566040 MTG1Q9BT17 334 aaPredicted RBP11.24□□□□□ -0.61
CLN3-220ENST00000566040 GLT8D2Q9H1C3 349 aa11.24□□□□□ -0.61
CLN3-220ENST00000566040 TRPV6Q9H1D0 765 aa11.24□□□□□ -0.61
CLN3-220ENST00000566040 SH2B1Q9NRF2 756 aaPredicted RBP11.24□□□□□ -0.61
CLN3-220ENST00000566040 PKD2L1Q9P0L9 805 aa11.24□□□□□ -0.61
CLN3-220ENST00000566040 IGKV6D-21A0A0A0MT36 114 aa11.23□□□□□ -0.61
CLN3-220ENST00000566040 MSH4O15457 936 aa11.23□□□□□ -0.61
CLN3-220ENST00000566040 PQBP1O60828 265 aaKnown RBP11.23□□□□□ -0.61
CLN3-220ENST00000566040 MAGEA10P43363 369 aaPredicted RBP11.23□□□□□ -0.61
CLN3-220ENST00000566040 ADAM17P78536 824 aa11.23□□□□□ -0.61
CLN3-220ENST00000566040 CUL4AQ13619 759 aa11.23□□□□□ -0.61
CLN3-220ENST00000566040 LAMC2Q13753 1193 aa11.23□□□□□ -0.61
CLN3-220ENST00000566040 INF2Q27J81 1249 aa11.23□□□□□ -0.61
CLN3-220ENST00000566040 GNPTABQ3T906 1256 aa11.23□□□□□ -0.61
CLN3-220ENST00000566040 KCNV1Q6PIU1 500 aa11.23□□□□□ -0.61
CLN3-220ENST00000566040 TRAF7Q6Q0C0 670 aa11.23□□□□□ -0.61
CLN3-220ENST00000566040 SESTD1Q86VW0 696 aa11.23□□□□□ -0.61
CLN3-220ENST00000566040 DHX37Q8IY37 1157 aaKnown RBP11.23□□□□□ -0.61
CLN3-220ENST00000566040 ETNPPLQ8TBG4 499 aa11.23□□□□□ -0.61
CLN3-220ENST00000566040 ZSCAN31Q96LW9 406 aaPredicted RBP11.23□□□□□ -0.61
CLN3-220ENST00000566040 SPATA33Q96N06 139 aa11.23□□□□□ -0.61
CLN3-220ENST00000566040 WNT8AQ9H1J5 351 aa11.23□□□□□ -0.61
CLN3-220ENST00000566040 SPC25Q9HBM1 224 aa11.23□□□□□ -0.61
CLN3-220ENST00000566040 TRMT13Q9NUP7 481 aaKnown RBP11.23□□□□□ -0.61
CLN3-220ENST00000566040 POLR3EQ9NVU0 708 aa11.23□□□□□ -0.61
CLN3-220ENST00000566040 NFASCO94856 1347 aa11.23□□□□□ -0.61
CLN3-220ENST00000566040 CDH23Q9H251 3354 aa11.22□□□□□ -0.61
CLN3-220ENST00000566040 BTBD18B2RXH4 712 aa11.22□□□□□ -0.61
CLN3-220ENST00000566040 TRANK1O15050 2925 aa11.22□□□□□ -0.61
CLN3-220ENST00000566040 LGR5O75473 907 aa11.22□□□□□ -0.61
CLN3-220ENST00000566040 CABYRO75952 493 aa11.22□□□□□ -0.61
CLN3-220ENST00000566040 ATG7O95352 703 aa11.22□□□□□ -0.61
CLN3-220ENST00000566040 PSEN2P49810 448 aa11.22□□□□□ -0.61
CLN3-220ENST00000566040 ZNF200P98182 395 aaPredicted RBP11.22□□□□□ -0.61
CLN3-220ENST00000566040 GUCY1B3Q02153 619 aa11.22□□□□□ -0.61
CLN3-220ENST00000566040 GPNMBQ14956 572 aa11.22□□□□□ -0.61
CLN3-220ENST00000566040 TRIM71Q2Q1W2 868 aaKnown RBP11.22□□□□□ -0.61
CLN3-220ENST00000566040 GALNT17Q6IS24 598 aa11.22□□□□□ -0.61
CLN3-220ENST00000566040 GDF6Q6KF10 455 aaPredicted RBP11.22□□□□□ -0.61
CLN3-220ENST00000566040 CPLX2Q6PUV4 134 aaKnown RBP11.22□□□□□ -0.61
CLN3-220ENST00000566040 NLRX1Q86UT6 975 aa11.22□□□□□ -0.61
CLN3-220ENST00000566040 PLA2G4DQ86XP0 818 aa11.22□□□□□ -0.61
CLN3-220ENST00000566040 SLC5A5Q92911 643 aa11.22□□□□□ -0.61
CLN3-220ENST00000566040 NOC4LQ9BVI4 516 aaKnown RBP11.22□□□□□ -0.61
CLN3-220ENST00000566040 COLQQ9Y215 455 aaPredicted RBP11.22□□□□□ -0.61
CLN3-220ENST00000566040 COL4A6Q14031 1691 aa11.21□□□□□ -0.61
CLN3-220ENST00000566040 EMSYQ7Z589 1322 aa11.21□□□□□ -0.61
CLN3-220ENST00000566040 PPFIA4O75335 1185 aa11.21□□□□□ -0.61
CLN3-220ENST00000566040 PSMD10O75832 226 aa11.21□□□□□ -0.61
CLN3-220ENST00000566040 CLTBP09497 229 aa11.21□□□□□ -0.61
CLN3-220ENST00000566040 ATP4AP20648 1035 aa11.21□□□□□ -0.61
CLN3-220ENST00000566040 TCF7P36402 384 aaPredicted RBP11.21□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms