RNA–Protein interactions for RNA: ENST00000564468.5

CLK3-216, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 929 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-216ENST00000564468 SREBF1P36956 1147 aa15.29■□□□□ 0.04
CLK3-216ENST00000564468 PSEN2P49810 448 aa15.29■□□□□ 0.04
CLK3-216ENST00000564468 NLRP5P59047 1200 aa15.29■□□□□ 0.04
CLK3-216ENST00000564468 CHMP4BP1P59074 171 aa15.29■□□□□ 0.04
CLK3-216ENST00000564468 SEMA3FQ13275 785 aa15.29■□□□□ 0.04
CLK3-216ENST00000564468 PPIGQ13427 754 aaKnown RBP eCLIP15.29■□□□□ 0.048e-7■■■□□ 17.1
CLK3-216ENST00000564468 C8orf34Q49A92 452 aa15.29■□□□□ 0.04
CLK3-216ENST00000564468 JAKMIP3Q5VZ66 844 aa15.29■□□□□ 0.04
CLK3-216ENST00000564468 CYFIP1Q7L576 1253 aa15.29■□□□□ 0.04
CLK3-216ENST00000564468 SESTD1Q86VW0 696 aa15.29■□□□□ 0.04
CLK3-216ENST00000564468 FAM161BQ96MY7 647 aa15.29■□□□□ 0.04
CLK3-216ENST00000564468 GUCD1Q96NT3 240 aa15.29■□□□□ 0.04
CLK3-216ENST00000564468 MXRA8Q9BRK3 442 aa15.29■□□□□ 0.04
CLK3-216ENST00000564468 TRPV6Q9H1D0 765 aa15.29■□□□□ 0.04
CLK3-216ENST00000564468 HIPK3Q9H422 1215 aa15.29■□□□□ 0.04
CLK3-216ENST00000564468 NOD1Q9Y239 953 aa15.29■□□□□ 0.04
CLK3-216ENST00000564468 MYH9P35579 1960 aaKnown RBP15.29■□□□□ 0.04
CLK3-216ENST00000564468 SORBS3O60504 671 aa15.28■□□□□ 0.04
CLK3-216ENST00000564468 F2P00734 622 aa15.28■□□□□ 0.04
CLK3-216ENST00000564468 ITGB5P18084 799 aa15.28■□□□□ 0.04
CLK3-216ENST00000564468 SCRN1Q12765 414 aa15.28■□□□□ 0.04
CLK3-216ENST00000564468 CEP55Q53EZ4 464 aa15.28■□□□□ 0.04
CLK3-216ENST00000564468 GALNT17Q6IS24 598 aa15.28■□□□□ 0.04
CLK3-216ENST00000564468 C7orf31Q8N865 590 aa15.28■□□□□ 0.04
CLK3-216ENST00000564468 KAT2BQ92831 832 aa15.28■□□□□ 0.04
CLK3-216ENST00000564468 C22orf23Q9BZE7 217 aa15.28■□□□□ 0.04
CLK3-216ENST00000564468 UPF2Q9HAU5 1272 aaKnown RBP15.28■□□□□ 0.04
CLK3-216ENST00000564468 VPS54Q9P1Q0 977 aa15.28■□□□□ 0.04
CLK3-216ENST00000564468 TPCN1Q9ULQ1 816 aa15.28■□□□□ 0.04
CLK3-216ENST00000564468 STK36Q9NRP7 1315 aa15.27■□□□□ 0.04
CLK3-216ENST00000564468 HAS3O00219 553 aa15.27■□□□□ 0.04
CLK3-216ENST00000564468 KCNA2P16389 499 aa15.27■□□□□ 0.04
CLK3-216ENST00000564468 ITGB8P26012 769 aa15.27■□□□□ 0.04
CLK3-216ENST00000564468 ARHGAP4P98171 946 aa15.27■□□□□ 0.04
CLK3-216ENST00000564468 MFSD10Q14728 455 aa15.27■□□□□ 0.04
CLK3-216ENST00000564468 KIAA0753Q2KHM9 967 aa15.27■□□□□ 0.04
CLK3-216ENST00000564468 NIPA1Q7RTP0 329 aa15.27■□□□□ 0.04
CLK3-216ENST00000564468 CCDC155Q8N6L0 562 aa15.27■□□□□ 0.04
CLK3-216ENST00000564468 WASF1Q92558 559 aa15.27■□□□□ 0.04
CLK3-216ENST00000564468 PGBD1Q96JS3 809 aa15.27■□□□□ 0.04
CLK3-216ENST00000564468 ALG1Q9BT22 464 aa15.27■□□□□ 0.04
CLK3-216ENST00000564468 PPP1R12CQ9BZL4 782 aa15.27■□□□□ 0.04
CLK3-216ENST00000564468 TRMT13Q9NUP7 481 aaKnown RBP15.27■□□□□ 0.04
CLK3-216ENST00000564468 TMEM260Q9NX78 707 aa15.27■□□□□ 0.04
CLK3-216ENST00000564468 ZNF215Q9UL58 517 aaPredicted RBP15.27■□□□□ 0.04
CLK3-216ENST00000564468 PRUNE2Q8WUY3 3088 aa15.26■□□□□ 0.03
CLK3-216ENST00000564468 H3BRB1 525 aa15.26■□□□□ 0.03
CLK3-216ENST00000564468 MEIS1O00470 390 aa15.26■□□□□ 0.03
CLK3-216ENST00000564468 PPFIA3O75145 1194 aa15.26■□□□□ 0.03
CLK3-216ENST00000564468 CYP3A4P08684 503 aa15.26■□□□□ 0.03
CLK3-216ENST00000564468 ZNF286BP0CG31 522 aa15.26■□□□□ 0.03
CLK3-216ENST00000564468 BFSP2Q13515 415 aa15.26■□□□□ 0.03
CLK3-216ENST00000564468 PTGISQ16647 500 aa15.26■□□□□ 0.03
CLK3-216ENST00000564468 RETREG2Q8NC44 543 aa15.26■□□□□ 0.03
CLK3-216ENST00000564468 IL27Q8NEV9 243 aa15.26■□□□□ 0.03
CLK3-216ENST00000564468 SEPT1Q8WYJ6 367 aa15.26■□□□□ 0.03
CLK3-216ENST00000564468 SYMPKQ92797 1274 aaKnown RBP15.26■□□□□ 0.03
CLK3-216ENST00000564468 GPR20Q99678 358 aa15.26■□□□□ 0.03
CLK3-216ENST00000564468 SDF4Q9BRK5 362 aa15.26■□□□□ 0.03
CLK3-216ENST00000564468 C16orf70Q9BSU1 422 aa15.26■□□□□ 0.03
CLK3-216ENST00000564468 NOC4LQ9BVI4 516 aaKnown RBP15.26■□□□□ 0.03
CLK3-216ENST00000564468 TUT1Q9H6E5 874 aaKnown RBP15.26■□□□□ 0.03
CLK3-216ENST00000564468 KCNH7Q9NS40 1196 aa15.26■□□□□ 0.03
CLK3-216ENST00000564468 GTF2IRD1Q9UHL9 959 aa15.26■□□□□ 0.03
CLK3-216ENST00000564468 EYSQ5T1H1 3165 aa15.26■□□□□ 0.03
CLK3-216ENST00000564468 WDR81Q562E7 1941 aa15.25■□□□□ 0.03
CLK3-216ENST00000564468 NFASCO94856 1347 aa15.25■□□□□ 0.03
CLK3-216ENST00000564468 ATP9AO75110 1047 aa15.25■□□□□ 0.03
CLK3-216ENST00000564468 LGALS2P05162 132 aa15.25■□□□□ 0.03
CLK3-216ENST00000564468 CYP2C18P33260 490 aa15.25■□□□□ 0.03
CLK3-216ENST00000564468 RPUSD2Q8IZ73 545 aaKnown RBP15.25■□□□□ 0.03
CLK3-216ENST00000564468 MAFAQ8NHW3 353 aaPredicted RBP15.25■□□□□ 0.03
CLK3-216ENST00000564468 CAGE1Q8TC20 777 aa15.25■□□□□ 0.03
CLK3-216ENST00000564468 CDX2Q99626 313 aaPredicted RBP15.25■□□□□ 0.03
CLK3-216ENST00000564468 HDAC6Q9UBN7 1215 aa15.25■□□□□ 0.03
CLK3-216ENST00000564468 PCDHA4Q9UN74 947 aa15.25■□□□□ 0.03
CLK3-216ENST00000564468 TANC1Q9C0D5 1861 aa15.25■□□□□ 0.03
CLK3-216ENST00000564468 SCN5AQ14524 2016 aa15.24■□□□□ 0.03
CLK3-216ENST00000564468 PITPNM1O00562 1244 aa15.24■□□□□ 0.03
CLK3-216ENST00000564468 GNAT1P11488 350 aa15.24■□□□□ 0.03
CLK3-216ENST00000564468 CYP2C9P11712 490 aa15.24■□□□□ 0.03
CLK3-216ENST00000564468 CSF2RAP15509 400 aa15.24■□□□□ 0.03
CLK3-216ENST00000564468 SETQ01105 290 aaPredicted RBP15.24■□□□□ 0.03
CLK3-216ENST00000564468 SP4Q02446 784 aa15.24■□□□□ 0.03
CLK3-216ENST00000564468 SHHQ15465 462 aa15.24■□□□□ 0.03
CLK3-216ENST00000564468 GDF6Q6KF10 455 aaPredicted RBP15.24■□□□□ 0.03
CLK3-216ENST00000564468 PSRC1Q6PGN9 363 aaPredicted RBP15.24■□□□□ 0.03
CLK3-216ENST00000564468 PLA2G4DQ86XP0 818 aa15.24■□□□□ 0.03
CLK3-216ENST00000564468 BLIDQ8IZY5 108 aa15.24■□□□□ 0.03
CLK3-216ENST00000564468 DAGLBQ8NCG7 672 aa15.24■□□□□ 0.03
CLK3-216ENST00000564468 GTF3C6Q969F1 213 aa15.24■□□□□ 0.03
CLK3-216ENST00000564468 SEMA6BQ9H3T3 888 aa15.24■□□□□ 0.03
CLK3-216ENST00000564468 BCAS3Q9H6U6 928 aa15.24■□□□□ 0.03
CLK3-216ENST00000564468 JPH1Q9HDC5 661 aaPredicted RBP15.24■□□□□ 0.03
CLK3-216ENST00000564468 IL23AQ9NPF7 189 aa15.24■□□□□ 0.03
CLK3-216ENST00000564468 ORC3Q9UBD5 711 aaPredicted RBP15.24■□□□□ 0.03
CLK3-216ENST00000564468 SLC9A2Q9UBY0 812 aa15.24■□□□□ 0.03
CLK3-216ENST00000564468 PFKMP08237 780 aa15.23■□□□□ 0.03
CLK3-216ENST00000564468 RFC2P35250 354 aa15.23■□□□□ 0.03
CLK3-216ENST00000564468 TCF7P36402 384 aaPredicted RBP15.23■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms