RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 SUPT16HQ9Y5B9 1047 aaKnown RBP19.5■□□□□ 0.71
CLN3-211ENST00000564091 GBF1Q92538 1859 aa19.5■□□□□ 0.71
CLN3-211ENST00000564091 NOP56O00567 594 aaKnown RBP19.49■□□□□ 0.71
CLN3-211ENST00000564091 SGSM2O43147 1006 aa19.49■□□□□ 0.71
CLN3-211ENST00000564091 SEMA3FQ13275 785 aa19.49■□□□□ 0.71
CLN3-211ENST00000564091 CYFIP1Q7L576 1253 aa19.49■□□□□ 0.71
CLN3-211ENST00000564091 MYOCDQ8IZQ8 938 aa19.49■□□□□ 0.71
CLN3-211ENST00000564091 IGDCC4Q8TDY8 1250 aa19.49■□□□□ 0.71
CLN3-211ENST00000564091 MYL10Q9BUA6 226 aa19.49■□□□□ 0.71
CLN3-211ENST00000564091 OSBPL7Q9BZF2 842 aa19.49■□□□□ 0.71
CLN3-211ENST00000564091 RNPEPQ9H4A4 650 aa19.49■□□□□ 0.71
CLN3-211ENST00000564091 SPATA31C2B4DYI2 1134 aa19.48■□□□□ 0.71
CLN3-211ENST00000564091 ICAM3P32942 547 aa19.48■□□□□ 0.71
CLN3-211ENST00000564091 USP17L6PQ6QN14 398 aa19.48■□□□□ 0.71
CLN3-211ENST00000564091 METTL7BQ6UX53 244 aa19.48■□□□□ 0.71
CLN3-211ENST00000564091 MB21D2Q8IYB1 491 aaPredicted RBP19.48■□□□□ 0.71
CLN3-211ENST00000564091 INPP4AQ96PE3 977 aaPredicted RBP19.48■□□□□ 0.71
CLN3-211ENST00000564091 GPR20Q99678 358 aa19.48■□□□□ 0.71
CLN3-211ENST00000564091 LMCD1Q9NZU5 365 aa19.48■□□□□ 0.71
CLN3-211ENST00000564091 EMSYQ7Z589 1322 aa19.48■□□□□ 0.71
CLN3-211ENST00000564091 LAMA4Q16363 1823 aa19.47■□□□□ 0.71
CLN3-211ENST00000564091 AMHP03971 560 aa19.47■□□□□ 0.71
CLN3-211ENST00000564091 CTSHP09668 335 aa19.47■□□□□ 0.71
CLN3-211ENST00000564091 HOXC8P31273 242 aa19.47■□□□□ 0.71
CLN3-211ENST00000564091 SP4Q02446 784 aa19.47■□□□□ 0.71
CLN3-211ENST00000564091 MKRN4PQ13434 485 aaPredicted RBP19.47■□□□□ 0.71
CLN3-211ENST00000564091 NEDD9Q14511 834 aa19.47■□□□□ 0.71
CLN3-211ENST00000564091 PLEKHG4Q58EX7 1191 aa19.47■□□□□ 0.71
CLN3-211ENST00000564091 UTP14CQ5TAP6 766 aaKnown RBP19.47■□□□□ 0.71
CLN3-211ENST00000564091 TRIM50Q86XT4 487 aa19.47■□□□□ 0.71
CLN3-211ENST00000564091 C17orf80Q9BSJ5 609 aa19.47■□□□□ 0.71
CLN3-211ENST00000564091 USP26Q9BXU7 913 aa19.47■□□□□ 0.71
CLN3-211ENST00000564091 SETD4Q9NVD3 440 aa19.47■□□□□ 0.71
CLN3-211ENST00000564091 FRMPD4Q14CM0 1322 aa19.47■□□□□ 0.71
CLN3-211ENST00000564091 FIBPO43427 364 aa19.46■□□□□ 0.71
CLN3-211ENST00000564091 STAM2O75886 525 aa19.46■□□□□ 0.71
CLN3-211ENST00000564091 SMARCC2Q8TAQ2 1214 aa19.46■□□□□ 0.71
CLN3-211ENST00000564091 MAP4K1Q92918 833 aa19.46■□□□□ 0.71
CLN3-211ENST00000564091 LY9Q9HBG7 655 aa19.46■□□□□ 0.71
CLN3-211ENST00000564091 INSL6Q9Y581 213 aa19.46■□□□□ 0.71
CLN3-211ENST00000564091 RBM8AQ9Y5S9 174 aaKnown RBP19.46■□□□□ 0.71
CLN3-211ENST00000564091 IRX6P78412 446 aaPredicted RBP19.45■□□□□ 0.7
CLN3-211ENST00000564091 ZNF654Q8IZM8 581 aa19.45■□□□□ 0.7
CLN3-211ENST00000564091 CTCFLQ8NI51 663 aaPredicted RBP19.45■□□□□ 0.7
CLN3-211ENST00000564091 SEPT8Q92599 483 aa19.45■□□□□ 0.7
CLN3-211ENST00000564091 RRP36Q96EU6 259 aaKnown RBP19.45■□□□□ 0.7
CLN3-211ENST00000564091 TANC1Q9C0D5 1861 aa19.45■□□□□ 0.7
CLN3-211ENST00000564091 MEIS2O14770 477 aa19.44■□□□□ 0.7
CLN3-211ENST00000564091 PLEKHA8P1O95397 391 aa19.44■□□□□ 0.7
CLN3-211ENST00000564091 HTRA4P83105 476 aaPredicted RBP19.44■□□□□ 0.7
CLN3-211ENST00000564091 CMTR1Q8N1G2 835 aaKnown RBP19.44■□□□□ 0.7
CLN3-211ENST00000564091 CUL5Q93034 780 aa19.44■□□□□ 0.7
CLN3-211ENST00000564091 SPZ1Q9BXG8 430 aa19.44■□□□□ 0.7
CLN3-211ENST00000564091 EPHX3Q9H6B9 360 aa19.44■□□□□ 0.7
CLN3-211ENST00000564091 TRIP12Q14669 1992 aaPredicted RBP19.43■□□□□ 0.7
CLN3-211ENST00000564091 PRC1O43663 620 aa19.43■□□□□ 0.7
CLN3-211ENST00000564091 DDAH1O94760 285 aa19.43■□□□□ 0.7
CLN3-211ENST00000564091 UPP2O95045 317 aa19.43■□□□□ 0.7
CLN3-211ENST00000564091 GNAT1P11488 350 aa19.43■□□□□ 0.7
CLN3-211ENST00000564091 RXRAP19793 462 aa19.43■□□□□ 0.7
CLN3-211ENST00000564091 KIF5BP33176 963 aa19.43■□□□□ 0.7
CLN3-211ENST00000564091 ARHGAP4P98171 946 aa19.43■□□□□ 0.7
CLN3-211ENST00000564091 COL9A3Q14050 684 aaPredicted RBP19.43■□□□□ 0.7
CLN3-211ENST00000564091 PCNX4Q63HM2 1172 aa19.43■□□□□ 0.7
CLN3-211ENST00000564091 SRBD1Q8N5C6 995 aaKnown RBP19.43■□□□□ 0.7
CLN3-211ENST00000564091 FBXO22Q8NEZ5 403 aa19.43■□□□□ 0.7
CLN3-211ENST00000564091 LMBR1Q8WVP7 490 aa19.43■□□□□ 0.7
CLN3-211ENST00000564091 MAP3K14Q99558 947 aa19.43■□□□□ 0.7
CLN3-211ENST00000564091 ZNF215Q9UL58 517 aaPredicted RBP19.43■□□□□ 0.7
CLN3-211ENST00000564091 LOC101059915A0A1B0GWI6 518 aaPredicted RBP19.42■□□□□ 0.7
CLN3-211ENST00000564091 PIK3CDO00329 1044 aa19.42■□□□□ 0.7
CLN3-211ENST00000564091 ATP9AO75110 1047 aa19.42■□□□□ 0.7
CLN3-211ENST00000564091 CAND2O75155 1236 aa19.42■□□□□ 0.7
CLN3-211ENST00000564091 CASC1Q6TDU7 716 aa19.42■□□□□ 0.7
CLN3-211ENST00000564091 NFXL1Q6ZNB6 911 aa19.42■□□□□ 0.7
CLN3-211ENST00000564091 NLRX1Q86UT6 975 aa19.42■□□□□ 0.7
CLN3-211ENST00000564091 RAB11FIP4Q86YS3 637 aa19.42■□□□□ 0.7
CLN3-211ENST00000564091 SP7Q8TDD2 431 aaPredicted RBP19.42■□□□□ 0.7
CLN3-211ENST00000564091 TOP1MTQ969P6 601 aa19.42■□□□□ 0.7
CLN3-211ENST00000564091 YME1L1Q96TA2 773 aa19.42■□□□□ 0.7
CLN3-211ENST00000564091 SENP7Q9BQF6 1050 aa19.42■□□□□ 0.7
CLN3-211ENST00000564091 C1QTNF1Q9BXJ1 281 aa19.42■□□□□ 0.7
CLN3-211ENST00000564091 UBE2ZQ9H832 354 aaPredicted RBP19.42■□□□□ 0.7
CLN3-211ENST00000564091 SEC63Q9UGP8 760 aaKnown RBP19.42■□□□□ 0.7
CLN3-211ENST00000564091 hCG_1642624A0A1W2PR95 340 aa19.41■□□□□ 0.7
CLN3-211ENST00000564091 SH2B2O14492 632 aaPredicted RBP19.41■□□□□ 0.7
CLN3-211ENST00000564091 SMARCA1P28370 1054 aa19.41■□□□□ 0.7
CLN3-211ENST00000564091 ADAM17P78536 824 aa19.41■□□□□ 0.7
CLN3-211ENST00000564091 EPC2Q52LR7 807 aa19.41■□□□□ 0.7
CLN3-211ENST00000564091 XRRA1Q6P2D8 792 aa19.41■□□□□ 0.7
CLN3-211ENST00000564091 LZTS2Q9BRK4 669 aa19.41■□□□□ 0.7
CLN3-211ENST00000564091 PSTPIP2Q9H939 334 aa19.41■□□□□ 0.7
CLN3-211ENST00000564091 BAZ2BQ9UIF8 2168 aaKnown RBP19.41■□□□□ 0.7
CLN3-211ENST00000564091 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP19.4■□□□□ 0.7
CLN3-211ENST00000564091 KCNA5P22460 613 aa19.4■□□□□ 0.7
CLN3-211ENST00000564091 FAM26DQ5JW98 314 aa19.4■□□□□ 0.7
CLN3-211ENST00000564091 RUFY4Q6ZNE9 571 aa19.4■□□□□ 0.7
CLN3-211ENST00000564091 KHSRPQ92945 711 aaKnown RBP eCLIP19.4■□□□□ 0.7
CLN3-211ENST00000564091 PKD2L1Q9P0L9 805 aa19.4■□□□□ 0.7
CLN3-211ENST00000564091 KIAA1217Q5T5P2 1943 aa19.4■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 55.7 ms