RNA–Protein interactions for RNA: ENST00000563884.1

VPS35-204, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 759 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-204ENST00000563884 ZGLP1P0C6A0 271 aa6.95□□□□□ -1.3
VPS35-204ENST00000563884 SRFP11831 508 aa6.95□□□□□ -1.3
VPS35-204ENST00000563884 EPS15P42566 896 aa6.95□□□□□ -1.3
VPS35-204ENST00000563884 MPP2Q14168 576 aa6.95□□□□□ -1.3
VPS35-204ENST00000563884 FBXL19Q6PCT2 694 aa6.95□□□□□ -1.3
VPS35-204ENST00000563884 RNF141Q8WVD5 230 aa6.95□□□□□ -1.3
VPS35-204ENST00000563884 LRRC3Q9BY71 257 aa6.95□□□□□ -1.3
VPS35-204ENST00000563884 BCL11AQ9H165 835 aa6.95□□□□□ -1.3
VPS35-204ENST00000563884 CD320Q9NPF0 282 aa6.95□□□□□ -1.3
VPS35-204ENST00000563884 KLHL3Q9UH77 587 aa6.95□□□□□ -1.3
VPS35-204ENST00000563884 SMG5Q9UPR3 1016 aaKnown RBP6.95□□□□□ -1.3
VPS35-204ENST00000563884 STXBP5LQ9Y2K9 1186 aa6.95□□□□□ -1.3
VPS35-204ENST00000563884 POLR3KQ9Y2Y1 108 aaPredicted RBP6.95□□□□□ -1.3
VPS35-204ENST00000563884 PCDHA11Q9Y5I1 949 aa6.95□□□□□ -1.3
VPS35-204ENST00000563884 TONSLQ96HA7 1378 aa6.95□□□□□ -1.3
VPS35-204ENST00000563884 CACNA1AO00555 2505 aa6.94□□□□□ -1.3
VPS35-204ENST00000563884 RANBP2P49792 3224 aaKnown RBP6.94□□□□□ -1.3
VPS35-204ENST00000563884 DDX60Q8IY21 1712 aaKnown RBP6.94□□□□□ -1.3
VPS35-204ENST00000563884 A0A087WZG4 1122 aa6.94□□□□□ -1.3
VPS35-204ENST00000563884 MED14OSP0DP75 135 aa6.94□□□□□ -1.3
VPS35-204ENST00000563884 SRGNP10124 158 aa6.94□□□□□ -1.3
VPS35-204ENST00000563884 GLDCP23378 1020 aa6.94□□□□□ -1.3
VPS35-204ENST00000563884 VAMP1P23763 118 aa6.94□□□□□ -1.3
VPS35-204ENST00000563884 LILRA2Q8N149 483 aa6.94□□□□□ -1.3
VPS35-204ENST00000563884 CNBD1Q8NA66 436 aa6.94□□□□□ -1.3
VPS35-204ENST00000563884 GOLM1Q8NBJ4 401 aa6.94□□□□□ -1.3
VPS35-204ENST00000563884 PSMD1Q99460 953 aa6.94□□□□□ -1.3
VPS35-204ENST00000563884 GLIS2Q9BZE0 524 aaPredicted RBP6.94□□□□□ -1.3
VPS35-204ENST00000563884 GBA2Q9HCG7 927 aaPredicted RBP6.94□□□□□ -1.3
VPS35-204ENST00000563884 LAMB1P07942 1786 aa6.94□□□□□ -1.3
VPS35-204ENST00000563884 MRC1P22897 1456 aa6.93□□□□□ -1.3
VPS35-204ENST00000563884 UBR2Q8IWV8 1755 aa6.93□□□□□ -1.3
VPS35-204ENST00000563884 FITM1A5D6W6 292 aa6.93□□□□□ -1.3
VPS35-204ENST00000563884 NUAK1O60285 661 aa6.93□□□□□ -1.3
VPS35-204ENST00000563884 FKTNO75072 461 aa6.93□□□□□ -1.3
VPS35-204ENST00000563884 EIF4A3P38919 411 aaKnown RBP6.93□□□□□ -1.3
VPS35-204ENST00000563884 CHMP4BP1P59074 171 aa6.93□□□□□ -1.3
VPS35-204ENST00000563884 FAM160A1Q05DH4 1040 aa6.93□□□□□ -1.3
VPS35-204ENST00000563884 CLEC16AQ2KHT3 1053 aa6.93□□□□□ -1.3
VPS35-204ENST00000563884 HS2ST1Q7LGA3 356 aa6.93□□□□□ -1.3
VPS35-204ENST00000563884 REC114Q7Z4M0 266 aa6.93□□□□□ -1.3
VPS35-204ENST00000563884 SLFN12Q8IYM2 578 aa6.93□□□□□ -1.3
VPS35-204ENST00000563884 BAHD1Q8TBE0 780 aaPredicted RBP6.93□□□□□ -1.3
VPS35-204ENST00000563884 BACH2Q9BYV9 841 aa6.93□□□□□ -1.3
VPS35-204ENST00000563884 SLC6A17Q9H1V8 727 aa6.93□□□□□ -1.3
VPS35-204ENST00000563884 GPRC5DQ9NZD1 345 aa6.93□□□□□ -1.3
VPS35-204ENST00000563884 REV1Q9UBZ9 1251 aa6.93□□□□□ -1.3
VPS35-204ENST00000563884 PGAP2Q9UHJ9 254 aa6.93□□□□□ -1.3
VPS35-204ENST00000563884 GGT7Q9UJ14 662 aa6.93□□□□□ -1.3
VPS35-204ENST00000563884 HTTP42858 3142 aa6.93□□□□□ -1.3
VPS35-204ENST00000563884 ZNF646O15015 1829 aaPredicted RBP6.92□□□□□ -1.3
VPS35-204ENST00000563884 NPR1P16066 1061 aa6.92□□□□□ -1.3
VPS35-204ENST00000563884 SNAP47Q5SQN1 464 aa6.92□□□□□ -1.3
VPS35-204ENST00000563884 PRR5LQ6MZQ0 368 aa6.92□□□□□ -1.3
VPS35-204ENST00000563884 LILRA6Q6PI73 481 aa6.92□□□□□ -1.3
VPS35-204ENST00000563884 ZNF605Q86T29 641 aa6.92□□□□□ -1.3
VPS35-204ENST00000563884 PHACTR4Q8IZ21 702 aa6.92□□□□□ -1.3
VPS35-204ENST00000563884 FBXO27Q8NI29 283 aa6.92□□□□□ -1.3
VPS35-204ENST00000563884 CCDC74BQ96LY2 380 aa6.92□□□□□ -1.3
VPS35-204ENST00000563884 KREMEN1Q96MU8 473 aa6.92□□□□□ -1.3
VPS35-204ENST00000563884 SP110Q9HB58 689 aa6.92□□□□□ -1.3
VPS35-204ENST00000563884 ADAMTS1Q9UHI8 967 aa6.92□□□□□ -1.3
VPS35-204ENST00000563884 GPR160Q9UJ42 338 aa6.92□□□□□ -1.3
VPS35-204ENST00000563884 CENPFP49454 3210 aa6.91□□□□□ -1.3
VPS35-204ENST00000563884 CHURC1-FNTBB4DL54 471 aa6.91□□□□□ -1.3
VPS35-204ENST00000563884 ATE1O95260 518 aa6.91□□□□□ -1.3
VPS35-204ENST00000563884 HTR3BO95264 441 aa6.91□□□□□ -1.3
VPS35-204ENST00000563884 LINC00310P59036 64 aa6.91□□□□□ -1.3
VPS35-204ENST00000563884 RRS1Q15050 365 aaKnown RBP6.91□□□□□ -1.3
VPS35-204ENST00000563884 TIGD5Q53EQ6 642 aa6.91□□□□□ -1.3
VPS35-204ENST00000563884 IRF2BP1Q8IU81 584 aa6.91□□□□□ -1.3
VPS35-204ENST00000563884 SPPL2CQ8IUH8 684 aa6.91□□□□□ -1.3
VPS35-204ENST00000563884 NIM1KQ8IY84 436 aa6.91□□□□□ -1.3
VPS35-204ENST00000563884 TMEM87AQ8NBN3 555 aa6.91□□□□□ -1.3
VPS35-204ENST00000563884 ASPNQ9BXN1 380 aa6.91□□□□□ -1.3
VPS35-204ENST00000563884 CWC22Q9HCG8 908 aaKnown RBP6.91□□□□□ -1.3
VPS35-204ENST00000563884 METTL5Q9NRN9 209 aaKnown RBP6.91□□□□□ -1.3
VPS35-204ENST00000563884 SUPT16HQ9Y5B9 1047 aaKnown RBP6.91□□□□□ -1.3
VPS35-204ENST00000563884 TTC28Q96AY4 2481 aa6.9□□□□□ -1.3
VPS35-204ENST00000563884 EN2P19622 333 aaPredicted RBP6.9□□□□□ -1.3
VPS35-204ENST00000563884 ALDH1B1P30837 517 aa6.9□□□□□ -1.3
VPS35-204ENST00000563884 CHRNEQ04844 493 aa6.9□□□□□ -1.3
VPS35-204ENST00000563884 SREBF2Q12772 1141 aa6.9□□□□□ -1.3
VPS35-204ENST00000563884 DUSP4Q13115 394 aa6.9□□□□□ -1.3
VPS35-204ENST00000563884 NR0B2Q15466 257 aa6.9□□□□□ -1.3
VPS35-204ENST00000563884 HSP90AB2PQ58FF8 381 aa6.9□□□□□ -1.3
VPS35-204ENST00000563884 NPM2Q86SE8 214 aaKnown RBP6.9□□□□□ -1.3
VPS35-204ENST00000563884 ARMC5Q96C12 935 aa6.9□□□□□ -1.3
VPS35-204ENST00000563884 ASCC2Q9H1I8 757 aaPredicted RBP6.9□□□□□ -1.3
VPS35-204ENST00000563884 NR2E3Q9Y5X4 410 aa6.9□□□□□ -1.3
VPS35-204ENST00000563884 RAB3GAP2Q9H2M9 1393 aa6.9□□□□□ -1.31
VPS35-204ENST00000563884 COL4A5P29400 1685 aa6.9□□□□□ -1.31
VPS35-204ENST00000563884 SHISA3A0PJX4 238 aa6.89□□□□□ -1.31
VPS35-204ENST00000563884 KRTAP9-7A8MTY7 169 aa6.89□□□□□ -1.31
VPS35-204ENST00000563884 TBC1D8O95759 1140 aa6.89□□□□□ -1.31
VPS35-204ENST00000563884 GBP1P32455 592 aa6.89□□□□□ -1.31
VPS35-204ENST00000563884 FANCCQ00597 558 aa6.89□□□□□ -1.31
VPS35-204ENST00000563884 TEKQ02763 1124 aa6.89□□□□□ -1.31
VPS35-204ENST00000563884 TTLL10Q6ZVT0 673 aa6.89□□□□□ -1.31
VPS35-204ENST00000563884 RASAL3Q86YV0 1011 aa6.89□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms