RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 GPR20Q99678 358 aa11.76□□□□□ -0.53
LDLR-214ENST00000560628 TUT1Q9H6E5 874 aaKnown RBP11.76□□□□□ -0.53
LDLR-214ENST00000560628 BRPF3Q9ULD4 1205 aa11.76□□□□□ -0.53
LDLR-214ENST00000560628 TRIP12Q14669 1992 aaPredicted RBP11.76□□□□□ -0.53
LDLR-214ENST00000560628 C17orf102A2RUQ5 167 aa11.75□□□□□ -0.53
LDLR-214ENST00000560628 TREHO43280 583 aa11.75□□□□□ -0.53
LDLR-214ENST00000560628 ATP9AO75110 1047 aa11.75□□□□□ -0.53
LDLR-214ENST00000560628 ARHGEF15O94989 841 aa11.75□□□□□ -0.53
LDLR-214ENST00000560628 SMIM10L2AP0DMW4 78 aa11.75□□□□□ -0.53
LDLR-214ENST00000560628 SMIM10L2BP0DMW5 78 aa11.75□□□□□ -0.53
LDLR-214ENST00000560628 THPOP40225 353 aa11.75□□□□□ -0.53
LDLR-214ENST00000560628 KCNJ6P48051 423 aa11.75□□□□□ -0.53
LDLR-214ENST00000560628 RBL2Q08999 1139 aa11.75□□□□□ -0.53
LDLR-214ENST00000560628 XRRA1Q6P2D8 792 aa11.75□□□□□ -0.53
LDLR-214ENST00000560628 TRAF7Q6Q0C0 670 aa11.75□□□□□ -0.53
LDLR-214ENST00000560628 APOA5Q6Q788 366 aa11.75□□□□□ -0.53
LDLR-214ENST00000560628 NLRX1Q86UT6 975 aa11.75□□□□□ -0.53
LDLR-214ENST00000560628 TRIM50Q86XT4 487 aa11.75□□□□□ -0.53
LDLR-214ENST00000560628 ATP6V0A1Q93050 837 aa11.75□□□□□ -0.53
LDLR-214ENST00000560628 SLC9A7Q96T83 725 aa11.75□□□□□ -0.53
LDLR-214ENST00000560628 USP26Q9BXU7 913 aa11.75□□□□□ -0.53
LDLR-214ENST00000560628 RNPEPQ9H4A4 650 aa11.75□□□□□ -0.53
LDLR-214ENST00000560628 SETD4Q9NVD3 440 aa11.75□□□□□ -0.53
LDLR-214ENST00000560628 PKD2L1Q9P0L9 805 aa11.75□□□□□ -0.53
LDLR-214ENST00000560628 NAP1L2Q9ULW6 460 aaPredicted RBP11.75□□□□□ -0.53
LDLR-214ENST00000560628 PCDHA6Q9UN73 950 aa11.75□□□□□ -0.53
LDLR-214ENST00000560628 PCDHA8Q9Y5H6 950 aa11.75□□□□□ -0.53
LDLR-214ENST00000560628 V9GY48 417 aaPredicted RBP11.75□□□□□ -0.53
LDLR-214ENST00000560628 TET1Q8NFU7 2136 aa11.75□□□□□ -0.53
LDLR-214ENST00000560628 A0A0C4DFX4 3053 aa11.74□□□□□ -0.53
LDLR-214ENST00000560628 KIF28PB7ZC32 967 aa11.74□□□□□ -0.53
LDLR-214ENST00000560628 ZBTB43O43298 467 aa11.74□□□□□ -0.53
LDLR-214ENST00000560628 TLL1O43897 1013 aa11.74□□□□□ -0.53
LDLR-214ENST00000560628 BAIAP3O94812 1187 aa11.74□□□□□ -0.53
LDLR-214ENST00000560628 CXCL10P02778 98 aa11.74□□□□□ -0.53
LDLR-214ENST00000560628 CPA1P15085 419 aa11.74□□□□□ -0.53
LDLR-214ENST00000560628 ITGB5P18084 799 aa11.74□□□□□ -0.53
LDLR-214ENST00000560628 WDR5P61964 334 aaKnown RBP11.74□□□□□ -0.53
LDLR-214ENST00000560628 DEFB103AP81534 67 aa11.74□□□□□ -0.53
LDLR-214ENST00000560628 MBTPS1Q14703 1052 aa11.74□□□□□ -0.53
LDLR-214ENST00000560628 RTN1Q16799 776 aa11.74□□□□□ -0.53
LDLR-214ENST00000560628 TSGA10IPQ3SY00 556 aa11.74□□□□□ -0.53
LDLR-214ENST00000560628 CNKSR3Q6P9H4 555 aa11.74□□□□□ -0.53
LDLR-214ENST00000560628 SERINC5Q86VE9 423 aa11.74□□□□□ -0.53
LDLR-214ENST00000560628 MICALL1Q8N3F8 863 aa11.74□□□□□ -0.53
LDLR-214ENST00000560628 CCDC136Q96JN2 1154 aa11.74□□□□□ -0.53
LDLR-214ENST00000560628 SENP7Q9BQF6 1050 aa11.74□□□□□ -0.53
LDLR-214ENST00000560628 ZBED2Q9BTP6 218 aa11.74□□□□□ -0.53
LDLR-214ENST00000560628 KLF18A0A0U1RQI7 1052 aa11.73□□□□□ -0.53
LDLR-214ENST00000560628 SPDYE3A6NKU9 549 aa11.73□□□□□ -0.53
LDLR-214ENST00000560628 RSPH10B2B2RC85 870 aa11.73□□□□□ -0.53
LDLR-214ENST00000560628 PARNO95453 639 aaKnown RBP11.73□□□□□ -0.53
LDLR-214ENST00000560628 RSPH10BP0C881 870 aa11.73□□□□□ -0.53
LDLR-214ENST00000560628 TAP1Q03518 808 aa11.73□□□□□ -0.53
LDLR-214ENST00000560628 WWC2Q6AWC2 1192 aa11.73□□□□□ -0.53
LDLR-214ENST00000560628 FAM117BQ6P1L5 589 aa11.73□□□□□ -0.53
LDLR-214ENST00000560628 SPRED2Q7Z698 418 aa11.73□□□□□ -0.53
LDLR-214ENST00000560628 ARNTL2Q8WYA1 636 aa11.73□□□□□ -0.53
LDLR-214ENST00000560628 OSBPL7Q9BZF2 842 aa11.73□□□□□ -0.53
LDLR-214ENST00000560628 FAM217BQ9NTX9 383 aaPredicted RBP11.73□□□□□ -0.53
LDLR-214ENST00000560628 RBM28Q9NW13 759 aaKnown RBP11.73□□□□□ -0.53
LDLR-214ENST00000560628 UBIAD1Q9Y5Z9 338 aa11.73□□□□□ -0.53
LDLR-214ENST00000560628 CNTNAP5Q8WYK1 1306 aa11.72□□□□□ -0.53
LDLR-214ENST00000560628 ABHD14A-ACY1A0A1B0GW23 586 aa11.72□□□□□ -0.53
LDLR-214ENST00000560628 LCHNA4D1U4 455 aa11.72□□□□□ -0.53
LDLR-214ENST00000560628 EPOPA6NHQ4 379 aa11.72□□□□□ -0.53
LDLR-214ENST00000560628 GOLGA8AA7E2F4 631 aa11.72□□□□□ -0.53
LDLR-214ENST00000560628 GOLGA8BA8MQT2 603 aa11.72□□□□□ -0.53
LDLR-214ENST00000560628 LGR5O75473 907 aa11.72□□□□□ -0.53
LDLR-214ENST00000560628 CTSHP09668 335 aa11.72□□□□□ -0.53
LDLR-214ENST00000560628 KCNA2P16389 499 aa11.72□□□□□ -0.53
LDLR-214ENST00000560628 CDC27P30260 824 aa11.72□□□□□ -0.53
LDLR-214ENST00000560628 TCF7P36402 384 aaPredicted RBP11.72□□□□□ -0.53
LDLR-214ENST00000560628 NAPAP54920 295 aa11.72□□□□□ -0.53
LDLR-214ENST00000560628 ARHGAP4P98171 946 aa11.72□□□□□ -0.53
LDLR-214ENST00000560628 FGD1P98174 961 aa11.72□□□□□ -0.53
LDLR-214ENST00000560628 FUT2Q10981 343 aa11.72□□□□□ -0.53
LDLR-214ENST00000560628 MTMR1Q13613 665 aa11.72□□□□□ -0.53
LDLR-214ENST00000560628 IKBKEQ14164 716 aa11.72□□□□□ -0.53
LDLR-214ENST00000560628 KRT32Q14532 448 aa11.72□□□□□ -0.53
LDLR-214ENST00000560628 TYW1BQ6NUM6 668 aa11.72□□□□□ -0.53
LDLR-214ENST00000560628 LIN28BQ6ZN17 250 aaKnown RBP eCLIP11.72□□□□□ -0.536e-7■■□□□ 12.3
LDLR-214ENST00000560628 GIMAP8Q8ND71 665 aaPredicted RBP11.72□□□□□ -0.53
LDLR-214ENST00000560628 DBF4BQ8NFT6 615 aa11.72□□□□□ -0.53
LDLR-214ENST00000560628 GPRASP2Q96D09 838 aa11.72□□□□□ -0.53
LDLR-214ENST00000560628 PGBD1Q96JS3 809 aa11.72□□□□□ -0.53
LDLR-214ENST00000560628 JADE2Q9NQC1 790 aa11.72□□□□□ -0.53
LDLR-214ENST00000560628 ZNF215Q9UL58 517 aaPredicted RBP11.72□□□□□ -0.53
LDLR-214ENST00000560628 GBF1Q92538 1859 aa11.72□□□□□ -0.53
LDLR-214ENST00000560628 GSTTP1A0A1W2PQM5 241 aa11.71□□□□□ -0.53
LDLR-214ENST00000560628 SMCO2A6NFE2 343 aa11.71□□□□□ -0.53
LDLR-214ENST00000560628 GNAT1P11488 350 aa11.71□□□□□ -0.53
LDLR-214ENST00000560628 MARK3P27448 753 aa11.71□□□□□ -0.53
LDLR-214ENST00000560628 HOXC8P31273 242 aa11.71□□□□□ -0.53
LDLR-214ENST00000560628 ADD1P35611 737 aaKnown RBP11.71□□□□□ -0.53
LDLR-214ENST00000560628 APOBRQ0VD83 1088 aa11.71□□□□□ -0.53
LDLR-214ENST00000560628 KRT40Q6A162 431 aa11.71□□□□□ -0.53
LDLR-214ENST00000560628 Q6ZUG5 572 aa11.71□□□□□ -0.53
LDLR-214ENST00000560628 CYP2W1Q8TAV3 490 aa11.71□□□□□ -0.53
LDLR-214ENST00000560628 LMBR1Q8WVP7 490 aa11.71□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms