RNA–Protein interactions for RNA: ENST00000560514.1

TSPAN3-208, Transcript of tetraspanin 3, humanhuman

TSL 2

Gene TSPAN3, Length 638 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN3-208ENST00000560514 FAM227BQ96M60 508 aa20.74■□□□□ 0.91
TSPAN3-208ENST00000560514 PDCD2LQ9BRP1 358 aa20.74■□□□□ 0.91
TSPAN3-208ENST00000560514 TUT1Q9H6E5 874 aaKnown RBP20.74■□□□□ 0.91
TSPAN3-208ENST00000560514 A0A0D9SFI3 127 aa20.73■□□□□ 0.91
TSPAN3-208ENST00000560514 NOP56O00567 594 aaKnown RBP20.73■□□□□ 0.91
TSPAN3-208ENST00000560514 TREHO43280 583 aa20.73■□□□□ 0.91
TSPAN3-208ENST00000560514 MBTPS2O43462 519 aa20.73■□□□□ 0.91
TSPAN3-208ENST00000560514 SMIM10L2AP0DMW4 78 aa20.73■□□□□ 0.91
TSPAN3-208ENST00000560514 SMIM10L2BP0DMW5 78 aa20.73■□□□□ 0.91
TSPAN3-208ENST00000560514 TGFB3P10600 412 aa20.73■□□□□ 0.91
TSPAN3-208ENST00000560514 RNF135Q8IUD6 432 aa20.73■□□□□ 0.91
TSPAN3-208ENST00000560514 TBC1D10CQ8IV04 446 aa20.73■□□□□ 0.91
TSPAN3-208ENST00000560514 C16orf70Q9BSU1 422 aa20.73■□□□□ 0.91
TSPAN3-208ENST00000560514 AMNQ9BXJ7 453 aa20.73■□□□□ 0.91
TSPAN3-208ENST00000560514 MAP3K20Q9NYL2 800 aaKnown RBP20.73■□□□□ 0.91
TSPAN3-208ENST00000560514 LOC101059915A0A1B0GWI6 518 aaPredicted RBP20.72■□□□□ 0.91
TSPAN3-208ENST00000560514 TRIM6-TRIM34B2RNG4 842 aa20.72■□□□□ 0.91
TSPAN3-208ENST00000560514 STXBP3O00186 592 aa20.72■□□□□ 0.91
TSPAN3-208ENST00000560514 LTBRP36941 435 aa20.72■□□□□ 0.91
TSPAN3-208ENST00000560514 NT5C2P49902 561 aa20.72■□□□□ 0.91
TSPAN3-208ENST00000560514 HSD17B4P51659 736 aa20.72■□□□□ 0.91
TSPAN3-208ENST00000560514 PTPN5P54829 565 aa20.72■□□□□ 0.91
TSPAN3-208ENST00000560514 MFAP1P55081 439 aaKnown RBP20.72■□□□□ 0.91
TSPAN3-208ENST00000560514 SMAD4Q13485 552 aaKnown RBP20.72■□□□□ 0.91
TSPAN3-208ENST00000560514 PPP2R3CQ969Q6 453 aa20.72■□□□□ 0.91
TSPAN3-208ENST00000560514 PRRX2Q99811 253 aa20.72■□□□□ 0.91
TSPAN3-208ENST00000560514 IGFLR1Q9H665 355 aa20.72■□□□□ 0.91
TSPAN3-208ENST00000560514 C5orf67F2Z3F1 127 aa20.71■□□□□ 0.91
TSPAN3-208ENST00000560514 ZNF213O14771 459 aa20.71■□□□□ 0.91
TSPAN3-208ENST00000560514 LGALS2P05162 132 aa20.71■□□□□ 0.91
TSPAN3-208ENST00000560514 UBA1P22314 1058 aaKnown RBP20.71■□□□□ 0.91
TSPAN3-208ENST00000560514 CCND2P30279 289 aa20.71■□□□□ 0.91
TSPAN3-208ENST00000560514 BMPR1AP36894 532 aa20.71■□□□□ 0.91
TSPAN3-208ENST00000560514 PKN1Q16512 942 aa20.71■□□□□ 0.91
TSPAN3-208ENST00000560514 CTC1Q2NKJ3 1217 aa20.71■□□□□ 0.91
TSPAN3-208ENST00000560514 ANKS1AQ92625 1134 aa20.71■□□□□ 0.91
TSPAN3-208ENST00000560514 EDAQ92838 391 aa20.71■□□□□ 0.91
TSPAN3-208ENST00000560514 RNPEPQ9H4A4 650 aa20.71■□□□□ 0.91
TSPAN3-208ENST00000560514 JMJD4Q9H9V9 463 aa20.71■□□□□ 0.91
TSPAN3-208ENST00000560514 CD207Q9UJ71 328 aa20.71■□□□□ 0.91
TSPAN3-208ENST00000560514 KAT6AQ92794 2004 aa20.71■□□□□ 0.91
TSPAN3-208ENST00000560514 NEDD4P46934 1319 aa20.71■□□□□ 0.91
TSPAN3-208ENST00000560514 GRM6O15303 877 aa20.7■□□□□ 0.9
TSPAN3-208ENST00000560514 RGS20O76081 388 aa20.7■□□□□ 0.9
TSPAN3-208ENST00000560514 CSPG5O95196 566 aa20.7■□□□□ 0.9
TSPAN3-208ENST00000560514 HYAL1Q12794 435 aa20.7■□□□□ 0.9
TSPAN3-208ENST00000560514 PGM5Q15124 567 aa20.7■□□□□ 0.9
TSPAN3-208ENST00000560514 ZNF589Q86UQ0 364 aaPredicted RBP20.7■□□□□ 0.9
TSPAN3-208ENST00000560514 VSIG10LQ86VR7 867 aa20.7■□□□□ 0.9
TSPAN3-208ENST00000560514 SUGP1Q8IWZ8 645 aaKnown RBP20.7■□□□□ 0.9
TSPAN3-208ENST00000560514 USP26Q9BXU7 913 aa20.7■□□□□ 0.9
TSPAN3-208ENST00000560514 C5orf42Q9H799 3197 aa20.7■□□□□ 0.9
TSPAN3-208ENST00000560514 ATG2AQ2TAZ0 1938 aa20.69■□□□□ 0.9
TSPAN3-208ENST00000560514 KDM4AO75164 1064 aa20.69■□□□□ 0.9
TSPAN3-208ENST00000560514 NDUFV1P49821 464 aa20.69■□□□□ 0.9
TSPAN3-208ENST00000560514 SP2Q02086 613 aa20.69■□□□□ 0.9
TSPAN3-208ENST00000560514 DLX2Q07687 328 aaPredicted RBP20.69■□□□□ 0.9
TSPAN3-208ENST00000560514 NMIQ13287 307 aaPredicted RBP20.69■□□□□ 0.9
TSPAN3-208ENST00000560514 GNPTABQ3T906 1256 aa20.69■□□□□ 0.9
TSPAN3-208ENST00000560514 ANKRD45Q5TZF3 282 aa20.69■□□□□ 0.9
TSPAN3-208ENST00000560514 STOX1Q6ZVD7 989 aa20.69■□□□□ 0.9
TSPAN3-208ENST00000560514 TICAM2Q86XR7 235 aa20.69■□□□□ 0.9
TSPAN3-208ENST00000560514 SAMD3Q8N6K7 520 aa20.69■□□□□ 0.9
TSPAN3-208ENST00000560514 PBXIP1Q96AQ6 731 aa20.69■□□□□ 0.9
TSPAN3-208ENST00000560514 ZNF215Q9UL58 517 aaPredicted RBP20.69■□□□□ 0.9
TSPAN3-208ENST00000560514 TECTAO75443 2155 aa20.68■□□□□ 0.9
TSPAN3-208ENST00000560514 ST18O60284 1047 aa20.68■□□□□ 0.9
TSPAN3-208ENST00000560514 HOXA13P31271 388 aaPredicted RBP20.68■□□□□ 0.9
TSPAN3-208ENST00000560514 HOXC8P31273 242 aa20.68■□□□□ 0.9
TSPAN3-208ENST00000560514 BTG3Q14201 252 aaPredicted RBP20.68■□□□□ 0.9
TSPAN3-208ENST00000560514 BMP8AQ7Z5Y6 402 aa20.68■□□□□ 0.9
TSPAN3-208ENST00000560514 ZSCAN10Q96SZ4 725 aaPredicted RBP20.68■□□□□ 0.9
TSPAN3-208ENST00000560514 SETD4Q9NVD3 440 aa20.68■□□□□ 0.9
TSPAN3-208ENST00000560514 ADGRA3Q8IWK6 1321 aa20.68■□□□□ 0.9
TSPAN3-208ENST00000560514 TMEM221A6NGB7 291 aa20.67■□□□□ 0.9
TSPAN3-208ENST00000560514 M0R296 226 aa20.67■□□□□ 0.9
TSPAN3-208ENST00000560514 TBX10O75333 385 aa20.67■□□□□ 0.9
TSPAN3-208ENST00000560514 ARHGAP4P98171 946 aa20.67■□□□□ 0.9
TSPAN3-208ENST00000560514 TRAF1Q13077 416 aa20.67■□□□□ 0.9
TSPAN3-208ENST00000560514 PHOX2BQ99453 314 aa20.67■□□□□ 0.9
TSPAN3-208ENST00000560514 OSBPL7Q9BZF2 842 aa20.67■□□□□ 0.9
TSPAN3-208ENST00000560514 PCDHB15Q9Y5E8 787 aa20.67■□□□□ 0.9
TSPAN3-208ENST00000560514 PCDHA1Q9Y5I3 950 aa20.67■□□□□ 0.9
TSPAN3-208ENST00000560514 SALL3Q9BXA9 1300 aa20.67■□□□□ 0.9
TSPAN3-208ENST00000560514 B4E1Z4 1266 aa20.66■□□□□ 0.9
TSPAN3-208ENST00000560514 GCOM1H8Y6P7 765 aaPredicted RBP20.66■□□□□ 0.9
TSPAN3-208ENST00000560514 MMP1P03956 469 aa20.66■□□□□ 0.9
TSPAN3-208ENST00000560514 POLR2MP0CAP2 368 aa20.66■□□□□ 0.9
TSPAN3-208ENST00000560514 PDE1AP54750 535 aa20.66■□□□□ 0.9
TSPAN3-208ENST00000560514 GHRHRQ02643 423 aa20.66■□□□□ 0.9
TSPAN3-208ENST00000560514 NEDD9Q14511 834 aa20.66■□□□□ 0.9
TSPAN3-208ENST00000560514 FAM26DQ5JW98 314 aa20.66■□□□□ 0.9
TSPAN3-208ENST00000560514 TRIM67Q6ZTA4 783 aa20.66■□□□□ 0.9
TSPAN3-208ENST00000560514 FCHSD1Q86WN1 690 aa20.66■□□□□ 0.9
TSPAN3-208ENST00000560514 ENAHQ8N8S7 591 aaPredicted RBP20.66■□□□□ 0.9
TSPAN3-208ENST00000560514 PRSS33Q8NF86 280 aa20.66■□□□□ 0.9
TSPAN3-208ENST00000560514 IL31RAQ8NI17 732 aa20.66■□□□□ 0.9
TSPAN3-208ENST00000560514 ZFP91Q96JP5 570 aaPredicted RBP20.66■□□□□ 0.9
TSPAN3-208ENST00000560514 UBAC1Q9BSL1 405 aa20.66■□□□□ 0.9
TSPAN3-208ENST00000560514 PLVAPQ9BX97 442 aa20.66■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms