RNA–Protein interactions for RNA: ENST00000558157.5

USP3-206, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,439 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-206ENST00000558157 TTC26A0AVF1 554 aa11.98□□□□□ -0.49
USP3-206ENST00000558157 CFAP73A6NFT4 308 aa11.98□□□□□ -0.49
USP3-206ENST00000558157 B4E1Z4 1266 aa11.98□□□□□ -0.49
USP3-206ENST00000558157 VIL1P09327 827 aaKnown RBP11.98□□□□□ -0.49
USP3-206ENST00000558157 USP17L8P0C7I0 530 aa11.98□□□□□ -0.49
USP3-206ENST00000558157 NEFHP12036 1026 aa11.98□□□□□ -0.49
USP3-206ENST00000558157 STX17P56962 302 aa11.98□□□□□ -0.49
USP3-206ENST00000558157 ELF3P78545 371 aaPredicted RBP11.98□□□□□ -0.49
USP3-206ENST00000558157 BZW1Q7L1Q6 419 aaKnown RBP11.98□□□□□ -0.49
USP3-206ENST00000558157 HDAC7Q8WUI4 952 aa11.98□□□□□ -0.49
USP3-206ENST00000558157 IQCDQ96DY2 449 aa11.98□□□□□ -0.49
USP3-206ENST00000558157 SEC16BQ96JE7 1060 aa11.98□□□□□ -0.49
USP3-206ENST00000558157 SYT17Q9BSW7 474 aa11.98□□□□□ -0.49
USP3-206ENST00000558157 MCM9Q9NXL9 1143 aa11.98□□□□□ -0.49
USP3-206ENST00000558157 FLT1P17948 1338 aa11.98□□□□□ -0.49
USP3-206ENST00000558157 MYO3BQ8WXR4 1341 aa11.98□□□□□ -0.49
USP3-206ENST00000558157 KCNJ18B7U540 433 aa11.98□□□□□ -0.49
USP3-206ENST00000558157 AHCYL1O43865 530 aa11.98□□□□□ -0.49
USP3-206ENST00000558157 USO1O60763 962 aaKnown RBP11.98□□□□□ -0.49
USP3-206ENST00000558157 SMNDC1O75940 238 aaKnown RBP eCLIP11.98□□□□□ -0.494e-9■■■□□ 17.4
USP3-206ENST00000558157 ECM2O94769 699 aaPredicted RBP11.98□□□□□ -0.49
USP3-206ENST00000558157 FESP07332 822 aa11.98□□□□□ -0.49
USP3-206ENST00000558157 UBXN1Q04323 297 aa11.98□□□□□ -0.49
USP3-206ENST00000558157 KCNJ12Q14500 433 aa11.98□□□□□ -0.49
USP3-206ENST00000558157 APOBEC3HQ6NTF7 200 aaKnown RBP11.98□□□□□ -0.49
USP3-206ENST00000558157 WDR59Q6PJI9 974 aa11.98□□□□□ -0.49
USP3-206ENST00000558157 GRAMD1CQ8IYS0 662 aa11.98□□□□□ -0.49
USP3-206ENST00000558157 NSMCE1Q8WV22 266 aa11.98□□□□□ -0.49
USP3-206ENST00000558157 JDP2Q8WYK2 163 aa11.98□□□□□ -0.49
USP3-206ENST00000558157 CCT6BQ92526 530 aa11.98□□□□□ -0.49
USP3-206ENST00000558157 PYM1Q9BRP8 204 aaKnown RBP11.98□□□□□ -0.49
USP3-206ENST00000558157 NUCKS1Q9H1E3 243 aaKnown RBP11.98□□□□□ -0.49
USP3-206ENST00000558157 SAP30BPQ9UHR5 308 aaKnown RBP11.98□□□□□ -0.49
USP3-206ENST00000558157 TSKSQ9UJT2 592 aa11.98□□□□□ -0.49
USP3-206ENST00000558157 ZBTB12Q9Y330 459 aaPredicted RBP11.98□□□□□ -0.49
USP3-206ENST00000558157 H7C1D1 291 aa11.97□□□□□ -0.49
USP3-206ENST00000558157 LUC7L3O95232 432 aaKnown RBP11.97□□□□□ -0.49
USP3-206ENST00000558157 RPSAP08865 295 aaKnown RBP11.97□□□□□ -0.49
USP3-206ENST00000558157 RBM5P52756 815 aaKnown RBP eCLIP11.97□□□□□ -0.49
USP3-206ENST00000558157 CXCL9Q07325 125 aa11.97□□□□□ -0.49
USP3-206ENST00000558157 SBK1Q52WX2 424 aa11.97□□□□□ -0.49
USP3-206ENST00000558157 CCDC181Q5TID7 509 aa11.97□□□□□ -0.49
USP3-206ENST00000558157 GKAP1Q5VSY0 366 aaPredicted RBP11.97□□□□□ -0.49
USP3-206ENST00000558157 MIS18BP1Q6P0N0 1132 aa11.97□□□□□ -0.49
USP3-206ENST00000558157 MFSD6Q6ZSS7 791 aa11.97□□□□□ -0.49
USP3-206ENST00000558157 CYB5R4Q7L1T6 521 aa11.97□□□□□ -0.49
USP3-206ENST00000558157 PAGE5Q96GU1 130 aa11.97□□□□□ -0.49
USP3-206ENST00000558157 ZDHHC15Q96MV8 337 aa11.97□□□□□ -0.49
USP3-206ENST00000558157 AIFM3Q96NN9 605 aa11.97□□□□□ -0.49
USP3-206ENST00000558157 VPS16Q9H269 839 aa11.97□□□□□ -0.49
USP3-206ENST00000558157 TMBIM4Q9HC24 238 aa11.97□□□□□ -0.49
USP3-206ENST00000558157 SWAP70Q9UH65 585 aa11.97□□□□□ -0.49
USP3-206ENST00000558157 FRMD3A2A2Y4 597 aa11.97□□□□□ -0.49
USP3-206ENST00000558157 LGALS16A8MUM7 142 aa11.97□□□□□ -0.49
USP3-206ENST00000558157 MPHOSPH10O00566 681 aaKnown RBP11.97□□□□□ -0.49
USP3-206ENST00000558157 IFIT3O14879 490 aaKnown RBP11.97□□□□□ -0.49
USP3-206ENST00000558157 PPP1R12BO60237 982 aaPredicted RBP11.97□□□□□ -0.49
USP3-206ENST00000558157 BMP15O95972 392 aa11.97□□□□□ -0.49
USP3-206ENST00000558157 MMP1P03956 469 aa11.97□□□□□ -0.49
USP3-206ENST00000558157 SSBP05455 408 aaKnown RBP eCLIP11.97□□□□□ -0.49
USP3-206ENST00000558157 CDC25AP30304 524 aa11.97□□□□□ -0.49
USP3-206ENST00000558157 TOB1P50616 345 aaPredicted RBP11.97□□□□□ -0.49
USP3-206ENST00000558157 PAK1Q13153 545 aa11.97□□□□□ -0.49
USP3-206ENST00000558157 SLC5A9Q2M3M2 681 aa11.97□□□□□ -0.49
USP3-206ENST00000558157 RRP12Q5JTH9 1297 aaKnown RBP11.97□□□□□ -0.49
USP3-206ENST00000558157 CDC42EP5Q6NZY7 148 aa11.97□□□□□ -0.49
USP3-206ENST00000558157 MB21D1Q8N884 522 aa11.97□□□□□ -0.49
USP3-206ENST00000558157 ALS2CR12Q96Q35 445 aa11.97□□□□□ -0.49
USP3-206ENST00000558157 GMLQ99445 158 aa11.97□□□□□ -0.49
USP3-206ENST00000558157 SLC39A2Q9NP94 309 aa11.97□□□□□ -0.49
USP3-206ENST00000558157 PLCB1Q9NQ66 1216 aa11.97□□□□□ -0.49
USP3-206ENST00000558157 USP40Q9NVE5 1235 aa11.97□□□□□ -0.49
USP3-206ENST00000558157 NOP53Q9NZM5 478 aaKnown RBP11.97□□□□□ -0.49
USP3-206ENST00000558157 SLC12A6Q9UHW9 1150 aa11.97□□□□□ -0.49
USP3-206ENST00000558157 SERPINA10Q9UK55 444 aa11.97□□□□□ -0.49
USP3-206ENST00000558157 CTNND2Q9UQB3 1225 aa11.97□□□□□ -0.49
USP3-206ENST00000558157 SH3BP1Q9Y3L3 701 aa11.97□□□□□ -0.49
USP3-206ENST00000558157 EEF1GP26641 437 aaKnown RBP11.96□□□□□ -0.49
USP3-206ENST00000558157 RPS6KA3P51812 740 aa11.96□□□□□ -0.49
USP3-206ENST00000558157 SEMA3FQ13275 785 aa11.96□□□□□ -0.49
USP3-206ENST00000558157 PICALMQ13492 652 aa11.96□□□□□ -0.49
USP3-206ENST00000558157 NTRK3Q16288 839 aa11.96□□□□□ -0.49
USP3-206ENST00000558157 CDC37Q16543 378 aaPredicted RBP11.96□□□□□ -0.49
USP3-206ENST00000558157 CCDC38Q502W7 563 aa11.96□□□□□ -0.49
USP3-206ENST00000558157 CIAPIN1Q6FI81 312 aa11.96□□□□□ -0.49
USP3-206ENST00000558157 RUFY4Q6ZNE9 571 aa11.96□□□□□ -0.49
USP3-206ENST00000558157 PIK3R5Q8WYR1 880 aa11.96□□□□□ -0.49
USP3-206ENST00000558157 HVCN1Q96D96 273 aa11.96□□□□□ -0.49
USP3-206ENST00000558157 TMEM87BQ96K49 555 aa11.96□□□□□ -0.49
USP3-206ENST00000558157 LACRTQ9GZZ8 138 aa11.96□□□□□ -0.49
USP3-206ENST00000558157 RNF41Q9H4P4 317 aaPredicted RBP11.96□□□□□ -0.49
USP3-206ENST00000558157 CNNM2Q9H8M5 875 aa11.96□□□□□ -0.49
USP3-206ENST00000558157 DICER1Q9UPY3 1922 aaKnown RBP11.96□□□□□ -0.5
USP3-206ENST00000558157 GCOM1H8Y6P7 765 aaPredicted RBP11.96□□□□□ -0.5
USP3-206ENST00000558157 MYZAPP0CAP1 466 aa11.96□□□□□ -0.5
USP3-206ENST00000558157 HSPA9P38646 679 aaKnown RBP11.96□□□□□ -0.5
USP3-206ENST00000558157 MKRN4PQ13434 485 aaPredicted RBP11.96□□□□□ -0.5
USP3-206ENST00000558157 KCNB1Q14721 858 aa11.96□□□□□ -0.5
USP3-206ENST00000558157 C12orf60Q5U649 245 aa11.96□□□□□ -0.5
USP3-206ENST00000558157 APOA5Q6Q788 366 aa11.96□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms