RNA–Protein interactions for RNA: ENST00000557455.1

CCDC88C-213, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 811 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-213ENST00000557455 ARHGEF15O94989 841 aa12.77□□□□□ -0.37
CCDC88C-213ENST00000557455 ICAM3P32942 547 aa12.77□□□□□ -0.37
CCDC88C-213ENST00000557455 THPOP40225 353 aa12.77□□□□□ -0.37
CCDC88C-213ENST00000557455 GNAQP50148 359 aa12.77□□□□□ -0.37
CCDC88C-213ENST00000557455 DEFB103AP81534 67 aa12.77□□□□□ -0.37
CCDC88C-213ENST00000557455 HIC1Q14526 733 aa12.77□□□□□ -0.37
CCDC88C-213ENST00000557455 TRAF7Q6Q0C0 670 aa12.77□□□□□ -0.37
CCDC88C-213ENST00000557455 METTL7BQ6UX53 244 aa12.77□□□□□ -0.37
CCDC88C-213ENST00000557455 CYFIP1Q7L576 1253 aa12.77□□□□□ -0.37
CCDC88C-213ENST00000557455 TMCO2Q7Z6W1 182 aaPredicted RBP12.77□□□□□ -0.37
CCDC88C-213ENST00000557455 SERINC5Q86VE9 423 aa12.77□□□□□ -0.37
CCDC88C-213ENST00000557455 ATP6V0A1Q93050 837 aa12.77□□□□□ -0.37
CCDC88C-213ENST00000557455 TMEM87BQ96K49 555 aa12.77□□□□□ -0.37
CCDC88C-213ENST00000557455 INPP4AQ96PE3 977 aaPredicted RBP12.77□□□□□ -0.37
CCDC88C-213ENST00000557455 USP26Q9BXU7 913 aa12.77□□□□□ -0.37
CCDC88C-213ENST00000557455 BCAS3Q9H6U6 928 aa12.77□□□□□ -0.37
CCDC88C-213ENST00000557455 EMSYQ7Z589 1322 aa12.77□□□□□ -0.37
CCDC88C-213ENST00000557455 SIP14410 1827 aa12.76□□□□□ -0.37
CCDC88C-213ENST00000557455 LCHNA4D1U4 455 aa12.76□□□□□ -0.37
CCDC88C-213ENST00000557455 RSPH10B2B2RC85 870 aa12.76□□□□□ -0.37
CCDC88C-213ENST00000557455 SH2B2O14492 632 aaPredicted RBP12.76□□□□□ -0.37
CCDC88C-213ENST00000557455 LGR5O75473 907 aa12.76□□□□□ -0.37
CCDC88C-213ENST00000557455 GJB5O95377 273 aa12.76□□□□□ -0.37
CCDC88C-213ENST00000557455 RSPH10BP0C881 870 aa12.76□□□□□ -0.37
CCDC88C-213ENST00000557455 SMIM10L2AP0DMW4 78 aa12.76□□□□□ -0.37
CCDC88C-213ENST00000557455 SMIM10L2BP0DMW5 78 aa12.76□□□□□ -0.37
CCDC88C-213ENST00000557455 TCTN1Q2MV58 587 aa12.76□□□□□ -0.37
CCDC88C-213ENST00000557455 PCNX4Q63HM2 1172 aa12.76□□□□□ -0.37
CCDC88C-213ENST00000557455 USP17L6PQ6QN14 398 aa12.76□□□□□ -0.37
CCDC88C-213ENST00000557455 ADAMTS19Q8TE59 1207 aa12.76□□□□□ -0.37
CCDC88C-213ENST00000557455 RAD9AQ99638 391 aa12.76□□□□□ -0.37
CCDC88C-213ENST00000557455 LSG1Q9H089 658 aaKnown RBP12.76□□□□□ -0.37
CCDC88C-213ENST00000557455 RNPEPQ9H4A4 650 aa12.76□□□□□ -0.37
CCDC88C-213ENST00000557455 PIK3CDO00329 1044 aa12.75□□□□□ -0.37
CCDC88C-213ENST00000557455 MEIS2O14770 477 aa12.75□□□□□ -0.37
CCDC88C-213ENST00000557455 SLC27A2O14975 620 aa12.75□□□□□ -0.37
CCDC88C-213ENST00000557455 TREHO43280 583 aa12.75□□□□□ -0.37
CCDC88C-213ENST00000557455 PLEKHA8P1O95397 391 aa12.75□□□□□ -0.37
CCDC88C-213ENST00000557455 CALM1P0DP23 149 aa12.75□□□□□ -0.37
CCDC88C-213ENST00000557455 CALM2P0DP24 149 aa12.75□□□□□ -0.37
CCDC88C-213ENST00000557455 CALM3P0DP25 149 aa12.75□□□□□ -0.37
CCDC88C-213ENST00000557455 RXRAP19793 462 aa12.75□□□□□ -0.37
CCDC88C-213ENST00000557455 LIFRP42702 1097 aa12.75□□□□□ -0.37
CCDC88C-213ENST00000557455 SEMA3FQ13275 785 aa12.75□□□□□ -0.37
CCDC88C-213ENST00000557455 GRB10Q13322 594 aa12.75□□□□□ -0.37
CCDC88C-213ENST00000557455 MBTPS1Q14703 1052 aa12.75□□□□□ -0.37
CCDC88C-213ENST00000557455 AAK1Q2M2I8 961 aa12.75□□□□□ -0.37
CCDC88C-213ENST00000557455 KRT40Q6A162 431 aa12.75□□□□□ -0.37
CCDC88C-213ENST00000557455 XRRA1Q6P2D8 792 aa12.75□□□□□ -0.37
CCDC88C-213ENST00000557455 SPRED2Q7Z698 418 aa12.75□□□□□ -0.37
CCDC88C-213ENST00000557455 NLRX1Q86UT6 975 aa12.75□□□□□ -0.37
CCDC88C-213ENST00000557455 CMTR1Q8N1G2 835 aaKnown RBP12.75□□□□□ -0.37
CCDC88C-213ENST00000557455 SRBD1Q8N5C6 995 aaKnown RBP12.75□□□□□ -0.37
CCDC88C-213ENST00000557455 UHRF1Q96T88 793 aaPredicted RBP12.75□□□□□ -0.37
CCDC88C-213ENST00000557455 GPR20Q99678 358 aa12.75□□□□□ -0.37
CCDC88C-213ENST00000557455 SENP7Q9BQF6 1050 aa12.75□□□□□ -0.37
CCDC88C-213ENST00000557455 ESYT1Q9BSJ8 1104 aa12.75□□□□□ -0.37
CCDC88C-213ENST00000557455 ZNF215Q9UL58 517 aaPredicted RBP12.75□□□□□ -0.37
CCDC88C-213ENST00000557455 GNAT1P11488 350 aa12.74□□□□□ -0.37
CCDC88C-213ENST00000557455 HOXC8P31273 242 aa12.74□□□□□ -0.37
CCDC88C-213ENST00000557455 SP4Q02446 784 aa12.74□□□□□ -0.37
CCDC88C-213ENST00000557455 TFF2Q03403 129 aa12.74□□□□□ -0.37
CCDC88C-213ENST00000557455 UTP14CQ5TAP6 766 aaKnown RBP12.74□□□□□ -0.37
CCDC88C-213ENST00000557455 CREB3L3Q68CJ9 461 aa12.74□□□□□ -0.37
CCDC88C-213ENST00000557455 FAM117BQ6P1L5 589 aa12.74□□□□□ -0.37
CCDC88C-213ENST00000557455 GIMAP8Q8ND71 665 aaPredicted RBP12.74□□□□□ -0.37
CCDC88C-213ENST00000557455 DBF4BQ8NFT6 615 aa12.74□□□□□ -0.37
CCDC88C-213ENST00000557455 PSTPIP2Q9H939 334 aa12.74□□□□□ -0.37
CCDC88C-213ENST00000557455 ANO2Q9NQ90 1003 aa12.74□□□□□ -0.37
CCDC88C-213ENST00000557455 SLC12A7Q9Y666 1083 aa12.74□□□□□ -0.37
CCDC88C-213ENST00000557455 RBAK-RBAKDNI3L0D1 243 aa12.73□□□□□ -0.37
CCDC88C-213ENST00000557455 CAND2O75155 1236 aa12.73□□□□□ -0.37
CCDC88C-213ENST00000557455 AMHP03971 560 aa12.73□□□□□ -0.37
CCDC88C-213ENST00000557455 CTSHP09668 335 aa12.73□□□□□ -0.37
CCDC88C-213ENST00000557455 NECTIN1Q15223 517 aa12.73□□□□□ -0.37
CCDC88C-213ENST00000557455 PLEKHG4Q58EX7 1191 aa12.73□□□□□ -0.37
CCDC88C-213ENST00000557455 LIN28BQ6ZN17 250 aaKnown RBP eCLIP12.73□□□□□ -0.37
CCDC88C-213ENST00000557455 TRIM50Q86XT4 487 aa12.73□□□□□ -0.37
CCDC88C-213ENST00000557455 RAB11FIP4Q86YS3 637 aa12.73□□□□□ -0.37
CCDC88C-213ENST00000557455 MYOCDQ8IZQ8 938 aa12.73□□□□□ -0.37
CCDC88C-213ENST00000557455 CCDC82Q8N4S0 544 aa12.73□□□□□ -0.37
CCDC88C-213ENST00000557455 GPRASP2Q96D09 838 aa12.73□□□□□ -0.37
CCDC88C-213ENST00000557455 CDHR1Q96JP9 859 aa12.73□□□□□ -0.37
CCDC88C-213ENST00000557455 TGS1Q96RS0 853 aaKnown RBP12.73□□□□□ -0.37
CCDC88C-213ENST00000557455 LRRC2Q9BYS8 371 aa12.73□□□□□ -0.37
CCDC88C-213ENST00000557455 SETD4Q9NVD3 440 aa12.73□□□□□ -0.37
CCDC88C-213ENST00000557455 LMCD1Q9NZU5 365 aa12.73□□□□□ -0.37
CCDC88C-213ENST00000557455 MTUS1Q9ULD2 1270 aa12.73□□□□□ -0.37
CCDC88C-213ENST00000557455 COG5Q9UP83 839 aa12.73□□□□□ -0.37
CCDC88C-213ENST00000557455 TELO2Q9Y4R8 837 aa12.73□□□□□ -0.37
CCDC88C-213ENST00000557455 INSL6Q9Y581 213 aa12.73□□□□□ -0.37
CCDC88C-213ENST00000557455 NCOR1O75376 2440 aa12.72□□□□□ -0.37
CCDC88C-213ENST00000557455 hCG_1642624A0A1W2PR95 340 aa12.72□□□□□ -0.37
CCDC88C-213ENST00000557455 SPDYE3A6NKU9 549 aa12.72□□□□□ -0.37
CCDC88C-213ENST00000557455 LPXNO60711 386 aa12.72□□□□□ -0.37
CCDC88C-213ENST00000557455 BMP1P13497 986 aa12.72□□□□□ -0.37
CCDC88C-213ENST00000557455 TCF7P36402 384 aaPredicted RBP12.72□□□□□ -0.37
CCDC88C-213ENST00000557455 KCNQ1P51787 676 aa12.72□□□□□ -0.37
CCDC88C-213ENST00000557455 ERVK-21P61565 698 aa12.72□□□□□ -0.37
CCDC88C-213ENST00000557455 ARHGAP4P98171 946 aa12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms