RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 TFIP11Q9UBB9 837 aaKnown RBP14.52□□□□□ -0.09
SHMT2-227ENST00000557269 DOCK5Q9H7D0 1870 aa14.52□□□□□ -0.09
SHMT2-227ENST00000557269 ADAMTS4O75173 837 aa14.51□□□□□ -0.09
SHMT2-227ENST00000557269 PSMD10O75832 226 aa14.51□□□□□ -0.09
SHMT2-227ENST00000557269 CCNE2O96020 404 aa14.51□□□□□ -0.09
SHMT2-227ENST00000557269 GH1P01241 217 aa14.51□□□□□ -0.09
SHMT2-227ENST00000557269 NUCB2P80303 420 aa14.51□□□□□ -0.09
SHMT2-227ENST00000557269 BEX3Q00994 111 aa14.51□□□□□ -0.09
SHMT2-227ENST00000557269 SP4Q02446 784 aa14.51□□□□□ -0.09
SHMT2-227ENST00000557269 CEBPZQ03701 1054 aaKnown RBP14.51□□□□□ -0.09
SHMT2-227ENST00000557269 DNM1Q05193 864 aaKnown RBP14.51□□□□□ -0.09
SHMT2-227ENST00000557269 PTGDRQ13258 359 aa14.51□□□□□ -0.09
SHMT2-227ENST00000557269 PTPAQ15257 358 aa14.51□□□□□ -0.09
SHMT2-227ENST00000557269 SF3A1Q15459 793 aaKnown RBP14.51□□□□□ -0.09
SHMT2-227ENST00000557269 IL17AQ16552 155 aa14.51□□□□□ -0.09
SHMT2-227ENST00000557269 CALCRLQ16602 461 aa14.51□□□□□ -0.09
SHMT2-227ENST00000557269 DHX37Q8IY37 1157 aaKnown RBP14.51□□□□□ -0.09
SHMT2-227ENST00000557269 OR6J1Q8NGC5 347 aa14.51□□□□□ -0.09
SHMT2-227ENST00000557269 AFG1LQ8WV93 481 aa14.51□□□□□ -0.09
SHMT2-227ENST00000557269 UPF3AQ9H1J1 476 aaKnown RBP14.51□□□□□ -0.09
SHMT2-227ENST00000557269 XPNPEP3Q9NQH7 507 aa14.51□□□□□ -0.09
SHMT2-227ENST00000557269 NFASCO94856 1347 aa14.5□□□□□ -0.09
SHMT2-227ENST00000557269 TBX3O15119 743 aa14.5□□□□□ -0.09
SHMT2-227ENST00000557269 NKRFO15226 690 aaKnown RBP eCLIP14.5□□□□□ -0.09
SHMT2-227ENST00000557269 GJB1P08034 283 aa14.5□□□□□ -0.09
SHMT2-227ENST00000557269 GJA9P57773 515 aa14.5□□□□□ -0.09
SHMT2-227ENST00000557269 NKX3-2P78367 333 aa14.5□□□□□ -0.09
SHMT2-227ENST00000557269 LAMC2Q13753 1193 aa14.5□□□□□ -0.09
SHMT2-227ENST00000557269 NEDD9Q14511 834 aa14.5□□□□□ -0.09
SHMT2-227ENST00000557269 HSDL1Q3SXM5 330 aa14.5□□□□□ -0.09
SHMT2-227ENST00000557269 LRCH2Q5VUJ6 765 aa14.5□□□□□ -0.09
SHMT2-227ENST00000557269 METTL7BQ6UX53 244 aa14.5□□□□□ -0.09
SHMT2-227ENST00000557269 B3GNT9Q6UX72 402 aa14.5□□□□□ -0.09
SHMT2-227ENST00000557269 U2AF1L4Q8WU68 220 aaKnown RBP14.5□□□□□ -0.09
SHMT2-227ENST00000557269 EMID1Q96A84 441 aaPredicted RBP14.5□□□□□ -0.09
SHMT2-227ENST00000557269 ABHD8Q96I13 439 aa14.5□□□□□ -0.09
SHMT2-227ENST00000557269 SPATA33Q96N06 139 aa14.5□□□□□ -0.09
SHMT2-227ENST00000557269 RIT2Q99578 217 aa14.5□□□□□ -0.09
SHMT2-227ENST00000557269 CRISPLD2Q9H0B8 497 aa14.5□□□□□ -0.09
SHMT2-227ENST00000557269 MLXIPQ9HAP2 919 aa14.5□□□□□ -0.09
SHMT2-227ENST00000557269 VAV3Q9UKW4 847 aa14.5□□□□□ -0.09
SHMT2-227ENST00000557269 CIZ1Q9ULV3 898 aaPredicted RBP14.5□□□□□ -0.09
SHMT2-227ENST00000557269 Q9Y3F1 56 aa14.5□□□□□ -0.09
SHMT2-227ENST00000557269 GSTTP1A0A1W2PQM5 241 aa14.49□□□□□ -0.09
SHMT2-227ENST00000557269 MSCO60682 206 aa14.49□□□□□ -0.09
SHMT2-227ENST00000557269 SGPL1O95470 568 aa14.49□□□□□ -0.09
SHMT2-227ENST00000557269 MYCNP04198 464 aaPredicted RBP14.49□□□□□ -0.09
SHMT2-227ENST00000557269 OR52Z1P0C646 297 aa14.49□□□□□ -0.09
SHMT2-227ENST00000557269 TXKP42681 527 aa14.49□□□□□ -0.09
SHMT2-227ENST00000557269 ATP2C1P98194 919 aaPredicted RBP14.49□□□□□ -0.09
SHMT2-227ENST00000557269 SPIRE1Q08AE8 756 aa14.49□□□□□ -0.09
SHMT2-227ENST00000557269 ORC2Q13416 577 aaPredicted RBP14.49□□□□□ -0.09
SHMT2-227ENST00000557269 CCSAPQ6IQ19 270 aaPredicted RBP14.49□□□□□ -0.09
SHMT2-227ENST00000557269 GIMAP8Q8ND71 665 aaPredicted RBP14.49□□□□□ -0.09
SHMT2-227ENST00000557269 KLHDC9Q8NEP7 349 aa14.49□□□□□ -0.09
SHMT2-227ENST00000557269 FAM20AQ96MK3 541 aa14.49□□□□□ -0.09
SHMT2-227ENST00000557269 GPR20Q99678 358 aa14.49□□□□□ -0.09
SHMT2-227ENST00000557269 SDF4Q9BRK5 362 aa14.49□□□□□ -0.09
SHMT2-227ENST00000557269 AP5M1Q9H0R1 490 aa14.49□□□□□ -0.09
SHMT2-227ENST00000557269 UNC45AQ9H3U1 944 aa14.49□□□□□ -0.09
SHMT2-227ENST00000557269 JPH1Q9HDC5 661 aaPredicted RBP14.49□□□□□ -0.09
SHMT2-227ENST00000557269 TBC1D22BQ9NU19 505 aa14.49□□□□□ -0.09
SHMT2-227ENST00000557269 CHMP5Q9NZZ3 219 aa14.49□□□□□ -0.09
SHMT2-227ENST00000557269 SLC9A2Q9UBY0 812 aa14.49□□□□□ -0.09
SHMT2-227ENST00000557269 OGDHLQ9ULD0 1010 aa14.49□□□□□ -0.09
SHMT2-227ENST00000557269 FRMPD3Q5JV73 1810 aa14.49□□□□□ -0.09
SHMT2-227ENST00000557269 MYH15Q9Y2K3 1946 aa14.49□□□□□ -0.09
SHMT2-227ENST00000557269 A6NJR5 290 aa14.48□□□□□ -0.09
SHMT2-227ENST00000557269 EML1O00423 815 aa14.48□□□□□ -0.09
SHMT2-227ENST00000557269 CHMP2AO43633 222 aa14.48□□□□□ -0.09
SHMT2-227ENST00000557269 GAS7O60861 476 aa14.48□□□□□ -0.09
SHMT2-227ENST00000557269 MMP3P08254 477 aa14.48□□□□□ -0.09
SHMT2-227ENST00000557269 C6orf222P0C671 652 aaPredicted RBP14.48□□□□□ -0.09
SHMT2-227ENST00000557269 GJA8P48165 433 aa14.48□□□□□ -0.09
SHMT2-227ENST00000557269 MNX1P50219 401 aaPredicted RBP14.48□□□□□ -0.09
SHMT2-227ENST00000557269 ACTR2P61160 394 aa14.48□□□□□ -0.09
SHMT2-227ENST00000557269 GRIN1Q05586 938 aa14.48□□□□□ -0.09
SHMT2-227ENST00000557269 LRRC41Q15345 812 aa14.48□□□□□ -0.09
SHMT2-227ENST00000557269 FSCN1Q16658 493 aaKnown RBP14.48□□□□□ -0.09
SHMT2-227ENST00000557269 SLFN12Q8IYM2 578 aa14.48□□□□□ -0.09
SHMT2-227ENST00000557269 PPTC7Q8NI37 304 aa14.48□□□□□ -0.09
SHMT2-227ENST00000557269 ZNF396Q96N95 335 aaPredicted RBP14.48□□□□□ -0.09
SHMT2-227ENST00000557269 TEKT3Q9BXF9 490 aa14.48□□□□□ -0.09
SHMT2-227ENST00000557269 TTC12Q9H892 705 aaPredicted RBP14.48□□□□□ -0.09
SHMT2-227ENST00000557269 MARCH6O60337 910 aa14.47□□□□□ -0.09
SHMT2-227ENST00000557269 BAG4O95429 457 aaKnown RBP14.47□□□□□ -0.09
SHMT2-227ENST00000557269 TFRCP02786 760 aaKnown RBP14.47□□□□□ -0.09
SHMT2-227ENST00000557269 TECP42680 631 aa14.47□□□□□ -0.09
SHMT2-227ENST00000557269 NASPP49321 788 aaPredicted RBP14.47□□□□□ -0.09
SHMT2-227ENST00000557269 KCNA10Q16322 511 aa14.47□□□□□ -0.09
SHMT2-227ENST00000557269 GNASQ5JWF2 1037 aa14.47□□□□□ -0.09
SHMT2-227ENST00000557269 PCYT2Q99447 389 aa14.47□□□□□ -0.09
SHMT2-227ENST00000557269 POLR3EQ9NVU0 708 aa14.47□□□□□ -0.09
SHMT2-227ENST00000557269 PCDHA12Q9UN75 941 aa14.47□□□□□ -0.09
SHMT2-227ENST00000557269 ELP1O95163 1332 aa14.46□□□□□ -0.09
SHMT2-227ENST00000557269 ATG7O95352 703 aa14.46□□□□□ -0.09
SHMT2-227ENST00000557269 HOXD8P13378 290 aaPredicted RBP14.46□□□□□ -0.09
SHMT2-227ENST00000557269 EN2P19622 333 aaPredicted RBP14.46□□□□□ -0.09
SHMT2-227ENST00000557269 CST5P28325 142 aaPredicted RBP14.46□□□□□ -0.09
SHMT2-227ENST00000557269 MARCKSP29966 332 aaPredicted RBP14.46□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms