RNA–Protein interactions for RNA: ENST00000556798.1

SHMT2-225, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 525 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-225ENST00000556798 SETQ01105 290 aaPredicted RBP19.87■□□□□ 0.77
SHMT2-225ENST00000556798 ITGB3BPQ13352 177 aaPredicted RBP19.87■□□□□ 0.77
SHMT2-225ENST00000556798 HSDL1Q3SXM5 330 aa19.87■□□□□ 0.77
SHMT2-225ENST00000556798 METTL7BQ6UX53 244 aa19.87■□□□□ 0.77
SHMT2-225ENST00000556798 NEK8Q86SG6 692 aa19.87■□□□□ 0.77
SHMT2-225ENST00000556798 LENG9Q96B70 501 aa19.87■□□□□ 0.77
SHMT2-225ENST00000556798 SENP7Q9BQF6 1050 aa19.87■□□□□ 0.77
SHMT2-225ENST00000556798 H3BQV1 296 aa19.86■□□□□ 0.77
SHMT2-225ENST00000556798 MAFGO15525 162 aa19.86■□□□□ 0.77
SHMT2-225ENST00000556798 GNL2Q13823 731 aaKnown RBP19.86■□□□□ 0.77
SHMT2-225ENST00000556798 BRDTQ58F21 947 aaPredicted RBP19.86■□□□□ 0.77
SHMT2-225ENST00000556798 PPTC7Q8NI37 304 aa19.86■□□□□ 0.77
SHMT2-225ENST00000556798 INTS4Q96HW7 963 aaKnown RBP19.86■□□□□ 0.77
SHMT2-225ENST00000556798 DDX39AO00148 427 aaKnown RBP19.85■□□□□ 0.77
SHMT2-225ENST00000556798 NOP56O00567 594 aaKnown RBP19.85■□□□□ 0.77
SHMT2-225ENST00000556798 SLC37A4O43826 429 aa19.85■□□□□ 0.77
SHMT2-225ENST00000556798 PSMC6P62333 389 aa19.85■□□□□ 0.77
SHMT2-225ENST00000556798 PURAQ00577 322 aaKnown RBP19.85■□□□□ 0.77
SHMT2-225ENST00000556798 LARP1BQ659C4 914 aaKnown RBP19.85■□□□□ 0.77
SHMT2-225ENST00000556798 GIMAP8Q8ND71 665 aaPredicted RBP19.85■□□□□ 0.77
SHMT2-225ENST00000556798 VTI1AQ96AJ9 217 aa19.85■□□□□ 0.77
SHMT2-225ENST00000556798 GLT1D1Q96MS3 346 aa19.85■□□□□ 0.77
SHMT2-225ENST00000556798 ZNF577Q9BSK1 485 aa19.85■□□□□ 0.77
SHMT2-225ENST00000556798 FOXP1Q9H334 677 aaPredicted RBP19.85■□□□□ 0.77
SHMT2-225ENST00000556798 STARD7Q9NQZ5 370 aa19.85■□□□□ 0.77
SHMT2-225ENST00000556798 MYH9P35579 1960 aaKnown RBP19.84■□□□□ 0.77
SHMT2-225ENST00000556798 PDE4DIPQ5VU43 2346 aa19.84■□□□□ 0.77
SHMT2-225ENST00000556798 CYP3A7-CYP3A51PA0A087WV96 503 aa19.84■□□□□ 0.77
SHMT2-225ENST00000556798 WNT7AO00755 349 aa19.84■□□□□ 0.77
SHMT2-225ENST00000556798 CCNT1O60563 726 aaKnown RBP19.84■□□□□ 0.77
SHMT2-225ENST00000556798 ZNF286BP0CG31 522 aa19.84■□□□□ 0.77
SHMT2-225ENST00000556798 CYP3A7P24462 503 aa19.84■□□□□ 0.77
SHMT2-225ENST00000556798 LRRC26Q2I0M4 334 aa19.84■□□□□ 0.77
SHMT2-225ENST00000556798 MCTP1Q6DN14 999 aa19.84■□□□□ 0.77
SHMT2-225ENST00000556798 MOXD1Q6UVY6 613 aa19.84■□□□□ 0.77
SHMT2-225ENST00000556798 SPRYD3Q8NCJ5 442 aa19.84■□□□□ 0.77
SHMT2-225ENST00000556798 PPP1R13LQ8WUF5 828 aa19.84■□□□□ 0.77
SHMT2-225ENST00000556798 GJA10Q969M2 543 aa19.84■□□□□ 0.77
SHMT2-225ENST00000556798 GPR20Q99678 358 aa19.84■□□□□ 0.77
SHMT2-225ENST00000556798 SDF4Q9BRK5 362 aa19.84■□□□□ 0.77
SHMT2-225ENST00000556798 JPH1Q9HDC5 661 aaPredicted RBP19.84■□□□□ 0.77
SHMT2-225ENST00000556798 POLR3EQ9NVU0 708 aa19.84■□□□□ 0.77
SHMT2-225ENST00000556798 DDX25Q9UHL0 483 aaKnown RBP19.84■□□□□ 0.77
SHMT2-225ENST00000556798 NFASCO94856 1347 aa19.83■□□□□ 0.77
SHMT2-225ENST00000556798 IPO5O00410 1097 aaKnown RBP19.83■□□□□ 0.77
SHMT2-225ENST00000556798 MSH4O15457 936 aa19.83■□□□□ 0.77
SHMT2-225ENST00000556798 HSP90AA1P07900 732 aaKnown RBP19.83■□□□□ 0.77
SHMT2-225ENST00000556798 ATP2B1P20020 1258 aa19.83■□□□□ 0.77
SHMT2-225ENST00000556798 DGKDQ16760 1214 aa19.83■□□□□ 0.77
SHMT2-225ENST00000556798 Q4G0T1 1027 aa19.83■□□□□ 0.77
SHMT2-225ENST00000556798 SLC39A5Q6ZMH5 540 aa19.83■□□□□ 0.77
SHMT2-225ENST00000556798 NOSTRINQ8IVI9 506 aa19.83■□□□□ 0.77
SHMT2-225ENST00000556798 MBOAT7Q96N66 472 aa19.83■□□□□ 0.77
SHMT2-225ENST00000556798 MTG1Q9BT17 334 aaPredicted RBP19.83■□□□□ 0.77
SHMT2-225ENST00000556798 SLC9A2Q9UBY0 812 aa19.83■□□□□ 0.77
SHMT2-225ENST00000556798 MYH15Q9Y2K3 1946 aa19.82■□□□□ 0.76
SHMT2-225ENST00000556798 KAT6AQ92794 2004 aa19.82■□□□□ 0.76
SHMT2-225ENST00000556798 CHMP4BP1P59074 171 aa19.82■□□□□ 0.76
SHMT2-225ENST00000556798 MLLT1Q03111 559 aaPredicted RBP19.82■□□□□ 0.76
SHMT2-225ENST00000556798 HTATIP2Q9BUP3 242 aa19.82■□□□□ 0.76
SHMT2-225ENST00000556798 TRIP12Q14669 1992 aaPredicted RBP19.82■□□□□ 0.76
SHMT2-225ENST00000556798 ELP1O95163 1332 aa19.81■□□□□ 0.76
SHMT2-225ENST00000556798 A0A0U1RQG5 324 aaPredicted RBP19.81■□□□□ 0.76
SHMT2-225ENST00000556798 VPS37CA5D8V6 355 aaPredicted RBP19.81■□□□□ 0.76
SHMT2-225ENST00000556798 DHX15O43143 795 aaKnown RBP19.81■□□□□ 0.76
SHMT2-225ENST00000556798 KPNA6O60684 536 aa19.81■□□□□ 0.76
SHMT2-225ENST00000556798 CABYRO75952 493 aa19.81■□□□□ 0.76
SHMT2-225ENST00000556798 CCNE2O96020 404 aa19.81■□□□□ 0.76
SHMT2-225ENST00000556798 HOXD8P13378 290 aaPredicted RBP19.81■□□□□ 0.76
SHMT2-225ENST00000556798 GCFC2P16383 781 aaKnown RBP19.81■□□□□ 0.76
SHMT2-225ENST00000556798 U2AF2P26368 475 aaKnown RBP eCLIP19.81■□□□□ 0.764e-8■■□□□ 14.1
SHMT2-225ENST00000556798 RTP1P59025 263 aa19.81■□□□□ 0.76
SHMT2-225ENST00000556798 TRIM60Q495X7 471 aa19.81■□□□□ 0.76
SHMT2-225ENST00000556798 UTP14CQ5TAP6 766 aaKnown RBP19.81■□□□□ 0.76
SHMT2-225ENST00000556798 PPP4R3AQ6IN85 833 aa19.81■□□□□ 0.76
SHMT2-225ENST00000556798 TRIM50Q86XT4 487 aa19.81■□□□□ 0.76
SHMT2-225ENST00000556798 POTEDQ86YR6 584 aa19.81■□□□□ 0.76
SHMT2-225ENST00000556798 KAT2BQ92831 832 aa19.81■□□□□ 0.76
SHMT2-225ENST00000556798 ATP11BQ9Y2G3 1177 aa19.81■□□□□ 0.76
SHMT2-225ENST00000556798 GRIN2DO15399 1336 aa19.8■□□□□ 0.76
SHMT2-225ENST00000556798 GSTTP1A0A1W2PQM5 241 aa19.8■□□□□ 0.76
SHMT2-225ENST00000556798 PPFIA4O75335 1185 aa19.8■□□□□ 0.76
SHMT2-225ENST00000556798 LGALS2P05162 132 aa19.8■□□□□ 0.76
SHMT2-225ENST00000556798 TCF7P36402 384 aaPredicted RBP19.8■□□□□ 0.76
SHMT2-225ENST00000556798 ACTR2P61160 394 aa19.8■□□□□ 0.76
SHMT2-225ENST00000556798 ITGA7Q13683 1181 aa19.8■□□□□ 0.76
SHMT2-225ENST00000556798 SNX17Q15036 470 aa19.8■□□□□ 0.76
SHMT2-225ENST00000556798 ETNPPLQ8TBG4 499 aa19.8■□□□□ 0.76
SHMT2-225ENST00000556798 DPF3Q92784 378 aa19.8■□□□□ 0.76
SHMT2-225ENST00000556798 SLC5A5Q92911 643 aa19.8■□□□□ 0.76
SHMT2-225ENST00000556798 NAP1L4Q99733 375 aaKnown RBP19.8■□□□□ 0.76
SHMT2-225ENST00000556798 F2P00734 622 aa19.79■□□□□ 0.76
SHMT2-225ENST00000556798 PDCP20941 246 aa19.79■□□□□ 0.76
SHMT2-225ENST00000556798 SYT1P21579 422 aa19.79■□□□□ 0.76
SHMT2-225ENST00000556798 NBR1Q14596 966 aa19.79■□□□□ 0.76
SHMT2-225ENST00000556798 LRCH2Q5VUJ6 765 aa19.79■□□□□ 0.76
SHMT2-225ENST00000556798 C7orf61Q8IZ16 206 aa19.79■□□□□ 0.76
SHMT2-225ENST00000556798 SEPT1Q8WYJ6 367 aa19.79■□□□□ 0.76
SHMT2-225ENST00000556798 C16orf70Q9BSU1 422 aa19.79■□□□□ 0.76
SHMT2-225ENST00000556798 TBC1D22BQ9NU19 505 aa19.79■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms