RNA–Protein interactions for RNA: ENST00000556726.5

CCDC88C-211, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5

Gene CCDC88C, Length 3,617 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-211ENST00000556726 EXOC3O60645 756 aa13.35□□□□□ -0.27
CCDC88C-211ENST00000556726 HAUS3Q68CZ6 603 aa13.35□□□□□ -0.27
CCDC88C-211ENST00000556726 FBXO11Q86XK2 927 aa13.35□□□□□ -0.27
CCDC88C-211ENST00000556726 SPATA4Q8NEY3 305 aa13.35□□□□□ -0.27
CCDC88C-211ENST00000556726 EXOC4Q96A65 974 aa13.35□□□□□ -0.27
CCDC88C-211ENST00000556726 ANO3Q9BYT9 981 aa13.35□□□□□ -0.27
CCDC88C-211ENST00000556726 CUEDC2Q9H467 287 aa13.35□□□□□ -0.27
CCDC88C-211ENST00000556726 ARHGAP20Q9P2F6 1191 aa13.35□□□□□ -0.27
CCDC88C-211ENST00000556726 L1RE1Q9UN81 338 aa13.35□□□□□ -0.27
CCDC88C-211ENST00000556726 MYH2Q9UKX2 1941 aa13.35□□□□□ -0.27
CCDC88C-211ENST00000556726 TCP1P17987 556 aaKnown RBP13.35□□□□□ -0.27
CCDC88C-211ENST00000556726 KCNB1Q14721 858 aa13.35□□□□□ -0.27
CCDC88C-211ENST00000556726 CCDC170Q8IYT3 715 aa13.35□□□□□ -0.27
CCDC88C-211ENST00000556726 RTFDC1Q9BY42 306 aaPredicted RBP13.35□□□□□ -0.27
CCDC88C-211ENST00000556726 KCNQ5Q9NR82 932 aa13.35□□□□□ -0.27
CCDC88C-211ENST00000556726 HDAC9Q9UKV0 1011 aa13.35□□□□□ -0.27
CCDC88C-211ENST00000556726 SCN11AQ9UI33 1791 aa13.35□□□□□ -0.27
CCDC88C-211ENST00000556726 DCCP43146 1447 aa13.35□□□□□ -0.27
CCDC88C-211ENST00000556726 PDS5AQ29RF7 1337 aaKnown RBP13.35□□□□□ -0.27
CCDC88C-211ENST00000556726 ITIH6Q6UXX5 1313 aa13.35□□□□□ -0.27
CCDC88C-211ENST00000556726 GH2P01242 217 aa13.34□□□□□ -0.27
CCDC88C-211ENST00000556726 IRX5P78411 483 aaPredicted RBP13.34□□□□□ -0.27
CCDC88C-211ENST00000556726 KCNH2Q12809 1159 aa13.34□□□□□ -0.27
CCDC88C-211ENST00000556726 GJB7Q6PEY0 223 aa13.34□□□□□ -0.27
CCDC88C-211ENST00000556726 IFT20Q8IY31 132 aa13.34□□□□□ -0.27
CCDC88C-211ENST00000556726 GOLGA5Q8TBA6 731 aa13.34□□□□□ -0.27
CCDC88C-211ENST00000556726 PACSIN1Q9BY11 444 aa13.34□□□□□ -0.27
CCDC88C-211ENST00000556726 JMJD4Q9H9V9 463 aa13.34□□□□□ -0.27
CCDC88C-211ENST00000556726 MYO1CO00159 1063 aa13.34□□□□□ -0.27
CCDC88C-211ENST00000556726 SLC9A1P19634 815 aa13.34□□□□□ -0.27
CCDC88C-211ENST00000556726 SLC35G1Q2M3R5 365 aa13.34□□□□□ -0.27
CCDC88C-211ENST00000556726 NT5C3AQ9H0P0 336 aa13.34□□□□□ -0.27
CCDC88C-211ENST00000556726 EHD4Q9H223 541 aa13.34□□□□□ -0.27
CCDC88C-211ENST00000556726 ATRNO75882 1429 aa13.34□□□□□ -0.27
CCDC88C-211ENST00000556726 A0A1W2PQC6 194 aa13.34□□□□□ -0.27
CCDC88C-211ENST00000556726 EIF3CLB5ME19 914 aaKnown RBP13.34□□□□□ -0.27
CCDC88C-211ENST00000556726 KLRC4O43908 158 aa13.34□□□□□ -0.27
CCDC88C-211ENST00000556726 KRT14P02533 472 aa13.34□□□□□ -0.27
CCDC88C-211ENST00000556726 MYBL2P10244 700 aa13.34□□□□□ -0.27
CCDC88C-211ENST00000556726 MYCLP12524 364 aaPredicted RBP13.34□□□□□ -0.27
CCDC88C-211ENST00000556726 SEPT12Q8IYM1 358 aa13.34□□□□□ -0.27
CCDC88C-211ENST00000556726 CCDC127Q96BQ5 260 aa13.34□□□□□ -0.27
CCDC88C-211ENST00000556726 EIF3CQ99613 913 aaKnown RBP13.34□□□□□ -0.27
CCDC88C-211ENST00000556726 SELENOSQ9BQE4 189 aa13.34□□□□□ -0.27
CCDC88C-211ENST00000556726 SPZ1Q9BXG8 430 aa13.34□□□□□ -0.27
CCDC88C-211ENST00000556726 RBM12Q9NTZ6 932 aaKnown RBP13.34□□□□□ -0.27
CCDC88C-211ENST00000556726 STK17AQ9UEE5 414 aa13.34□□□□□ -0.27
CCDC88C-211ENST00000556726 KRIT1O00522 736 aa13.33□□□□□ -0.27
CCDC88C-211ENST00000556726 ERLIN2O94905 339 aa13.33□□□□□ -0.27
CCDC88C-211ENST00000556726 TUBBP07437 444 aa13.33□□□□□ -0.27
CCDC88C-211ENST00000556726 PPP1R2P41236 205 aa13.33□□□□□ -0.27
CCDC88C-211ENST00000556726 TNNC1P63316 161 aa13.33□□□□□ -0.27
CCDC88C-211ENST00000556726 RETREG2Q8NC44 543 aa13.33□□□□□ -0.27
CCDC88C-211ENST00000556726 CSRNP1Q96S65 589 aa13.33□□□□□ -0.27
CCDC88C-211ENST00000556726 RSPH10B2B2RC85 870 aa13.33□□□□□ -0.28
CCDC88C-211ENST00000556726 RSPH10BP0C881 870 aa13.33□□□□□ -0.28
CCDC88C-211ENST00000556726 ABCB5Q2M3G0 1257 aa13.33□□□□□ -0.28
CCDC88C-211ENST00000556726 C16orf86Q6ZW13 317 aa13.33□□□□□ -0.28
CCDC88C-211ENST00000556726 DDX42Q86XP3 938 aaKnown RBP eCLIP13.33□□□□□ -0.28
CCDC88C-211ENST00000556726 CERS3Q8IU89 383 aa13.33□□□□□ -0.28
CCDC88C-211ENST00000556726 ZFPM1Q8IX07 1006 aa13.33□□□□□ -0.28
CCDC88C-211ENST00000556726 CAPS2Q9BXY5 557 aa13.33□□□□□ -0.28
CCDC88C-211ENST00000556726 DDX4Q9NQI0 724 aaKnown RBP13.33□□□□□ -0.28
CCDC88C-211ENST00000556726 LCMT1Q9UIC8 334 aa13.33□□□□□ -0.28
CCDC88C-211ENST00000556726 ZBTB5O15062 677 aa13.33□□□□□ -0.28
CCDC88C-211ENST00000556726 VPS41P49754 854 aa13.33□□□□□ -0.28
CCDC88C-211ENST00000556726 TUBB4BP68371 445 aa13.33□□□□□ -0.28
CCDC88C-211ENST00000556726 SETQ01105 290 aaPredicted RBP13.33□□□□□ -0.28
CCDC88C-211ENST00000556726 ELOA2Q8IYF1 753 aaPredicted RBP13.33□□□□□ -0.28
CCDC88C-211ENST00000556726 DDX47Q9H0S4 455 aaKnown RBP13.33□□□□□ -0.28
CCDC88C-211ENST00000556726 IKZF4Q9H2S9 585 aa13.33□□□□□ -0.28
CCDC88C-211ENST00000556726 SNX12Q9UMY4 172 aa13.33□□□□□ -0.28
CCDC88C-211ENST00000556726 CCDC169A6NNP5 214 aa13.32□□□□□ -0.28
CCDC88C-211ENST00000556726 GAS7O60861 476 aa13.32□□□□□ -0.28
CCDC88C-211ENST00000556726 RAD17O75943 681 aa13.32□□□□□ -0.28
CCDC88C-211ENST00000556726 TRIM49P0CI25 452 aa13.32□□□□□ -0.28
CCDC88C-211ENST00000556726 TRIM49CP0CI26 452 aa13.32□□□□□ -0.28
CCDC88C-211ENST00000556726 HARSP12081 509 aaKnown RBP13.32□□□□□ -0.28
CCDC88C-211ENST00000556726 KLRC1P26715 233 aa13.32□□□□□ -0.28
CCDC88C-211ENST00000556726 C4orf32Q8N8J7 132 aa13.32□□□□□ -0.28
CCDC88C-211ENST00000556726 CYP2W1Q8TAV3 490 aa13.32□□□□□ -0.28
CCDC88C-211ENST00000556726 KCND1Q9NSA2 647 aa13.32□□□□□ -0.28
CCDC88C-211ENST00000556726 GCNT4Q9P109 453 aa13.32□□□□□ -0.28
CCDC88C-211ENST00000556726 TNFAIP3P21580 790 aa13.32□□□□□ -0.28
CCDC88C-211ENST00000556726 RPL13P26373 211 aaKnown RBP13.32□□□□□ -0.28
CCDC88C-211ENST00000556726 PBX1P40424 430 aa13.32□□□□□ -0.28
CCDC88C-211ENST00000556726 MNAT1P51948 309 aa13.32□□□□□ -0.28
CCDC88C-211ENST00000556726 ZNF211Q13398 564 aaPredicted RBP13.32□□□□□ -0.28
CCDC88C-211ENST00000556726 GUF1Q8N442 669 aaKnown RBP13.32□□□□□ -0.28
CCDC88C-211ENST00000556726 LRRC15Q8TF66 581 aa13.32□□□□□ -0.28
CCDC88C-211ENST00000556726 DYDC1Q8WWB3 177 aa13.32□□□□□ -0.28
CCDC88C-211ENST00000556726 C7orf25Q9BPX7 421 aa13.32□□□□□ -0.28
CCDC88C-211ENST00000556726 FGFBP2Q9BYJ0 223 aa13.32□□□□□ -0.28
CCDC88C-211ENST00000556726 MED4Q9NPJ6 270 aa13.32□□□□□ -0.28
CCDC88C-211ENST00000556726 CTTNBP2NLQ9P2B4 639 aa13.32□□□□□ -0.28
CCDC88C-211ENST00000556726 RABGAP1Q9Y3P9 1069 aa13.32□□□□□ -0.28
CCDC88C-211ENST00000556726 COL1A1P02452 1464 aaPredicted RBP13.32□□□□□ -0.28
CCDC88C-211ENST00000556726 BBOX1O75936 387 aa13.32□□□□□ -0.28
CCDC88C-211ENST00000556726 NMT1P30419 496 aaKnown RBP13.32□□□□□ -0.28
CCDC88C-211ENST00000556726 CARSP49589 748 aaKnown RBP13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms