RNA–Protein interactions for RNA: ENST00000555934.1

LINC00643-204, long intergenic non-protein coding RNA 643, humanhuman

TSL 2

Gene LINC00643, Length 1,184 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-204ENST00000555934 F2P00734 622 aa7.97□□□□□ -1.13
LINC00643-204ENST00000555934 LTFP02788 710 aa7.97□□□□□ -1.13
LINC00643-204ENST00000555934 ITGB5P18084 799 aa7.97□□□□□ -1.13
LINC00643-204ENST00000555934 PDE6BP35913 854 aa7.97□□□□□ -1.13
LINC00643-204ENST00000555934 MECP2P51608 486 aaKnown RBP7.97□□□□□ -1.13
LINC00643-204ENST00000555934 CHTF18Q8WVB6 975 aa7.97□□□□□ -1.13
LINC00643-204ENST00000555934 FMNL2Q96PY5 1086 aa7.97□□□□□ -1.13
LINC00643-204ENST00000555934 BCAS3Q9H6U6 928 aa7.97□□□□□ -1.13
LINC00643-204ENST00000555934 SLC6A20Q9NP91 592 aa7.97□□□□□ -1.13
LINC00643-204ENST00000555934 B4GALT6Q9UBX8 382 aa7.97□□□□□ -1.13
LINC00643-204ENST00000555934 BIN1O00499 593 aa7.96□□□□□ -1.14
LINC00643-204ENST00000555934 MAN2B1O00754 1011 aa7.96□□□□□ -1.14
LINC00643-204ENST00000555934 SCDO00767 359 aa7.96□□□□□ -1.14
LINC00643-204ENST00000555934 NEMP1O14524 444 aa7.96□□□□□ -1.14
LINC00643-204ENST00000555934 SGSM2O43147 1006 aa7.96□□□□□ -1.14
LINC00643-204ENST00000555934 PAPLNO95428 1278 aa7.96□□□□□ -1.14
LINC00643-204ENST00000555934 ATP2A2P16615 1042 aaKnown RBP7.96□□□□□ -1.14
LINC00643-204ENST00000555934 LACTBP83111 547 aaPredicted RBP7.96□□□□□ -1.14
LINC00643-204ENST00000555934 DSG1Q02413 1049 aa7.96□□□□□ -1.14
LINC00643-204ENST00000555934 RAB3GAP1Q15042 981 aa7.96□□□□□ -1.14
LINC00643-204ENST00000555934 DHCR24Q15392 516 aa7.96□□□□□ -1.14
LINC00643-204ENST00000555934 HABP4Q5JVS0 413 aaKnown RBP7.96□□□□□ -1.14
LINC00643-204ENST00000555934 CPZQ66K79 652 aa7.96□□□□□ -1.14
LINC00643-204ENST00000555934 MILR1Q7Z6M3 343 aa7.96□□□□□ -1.14
LINC00643-204ENST00000555934 DCP2Q8IU60 420 aaKnown RBP7.96□□□□□ -1.14
LINC00643-204ENST00000555934 PANK1Q8TE04 598 aa7.96□□□□□ -1.14
LINC00643-204ENST00000555934 INTS4Q96HW7 963 aaKnown RBP7.96□□□□□ -1.14
LINC00643-204ENST00000555934 TTC1Q99614 292 aa7.96□□□□□ -1.14
LINC00643-204ENST00000555934 AP5M1Q9H0R1 490 aa7.96□□□□□ -1.14
LINC00643-204ENST00000555934 PALD1Q9ULE6 856 aa7.96□□□□□ -1.14
LINC00643-204ENST00000555934 SLC12A8A0AV02 714 aa7.95□□□□□ -1.14
LINC00643-204ENST00000555934 HGSO14964 777 aaPredicted RBP7.95□□□□□ -1.14
LINC00643-204ENST00000555934 EYA4O95677 639 aa7.95□□□□□ -1.14
LINC00643-204ENST00000555934 ADCYAP1R1P41586 468 aa7.95□□□□□ -1.14
LINC00643-204ENST00000555934 TMPRSS15P98073 1019 aa7.95□□□□□ -1.14
LINC00643-204ENST00000555934 GRIN1Q05586 938 aa7.95□□□□□ -1.14
LINC00643-204ENST00000555934 STAT4Q14765 748 aa7.95□□□□□ -1.14
LINC00643-204ENST00000555934 ANKLE2Q86XL3 938 aa7.95□□□□□ -1.14
LINC00643-204ENST00000555934 NETO2Q8NC67 525 aa7.95□□□□□ -1.14
LINC00643-204ENST00000555934 SEC14L1Q92503 715 aa7.95□□□□□ -1.14
LINC00643-204ENST00000555934 FKBP9O95302 570 aa7.94□□□□□ -1.14
LINC00643-204ENST00000555934 CYBBP04839 570 aa7.94□□□□□ -1.14
LINC00643-204ENST00000555934 MPOP05164 745 aa7.94□□□□□ -1.14
LINC00643-204ENST00000555934 CPEP16870 476 aa7.94□□□□□ -1.14
LINC00643-204ENST00000555934 IRF9Q00978 393 aa7.94□□□□□ -1.14
LINC00643-204ENST00000555934 CHRNA2Q15822 529 aa7.94□□□□□ -1.14
LINC00643-204ENST00000555934 KCNMB1Q16558 191 aa7.94□□□□□ -1.14
LINC00643-204ENST00000555934 PAQR3Q6TCH7 311 aa7.94□□□□□ -1.14
LINC00643-204ENST00000555934 RPTNQ6XPR3 784 aa7.94□□□□□ -1.14
LINC00643-204ENST00000555934 FKBP9P1Q75LS8 142 aa7.94□□□□□ -1.14
LINC00643-204ENST00000555934 KIF18BQ86Y91 864 aa7.94□□□□□ -1.14
LINC00643-204ENST00000555934 SMC1BQ8NDV3 1235 aa7.94□□□□□ -1.14
LINC00643-204ENST00000555934 UHMK1Q8TAS1 419 aaKnown RBP7.94□□□□□ -1.14
LINC00643-204ENST00000555934 WDR66Q8TBY9 1149 aa7.94□□□□□ -1.14
LINC00643-204ENST00000555934 ORAI3Q9BRQ5 295 aa7.94□□□□□ -1.14
LINC00643-204ENST00000555934 IFT22Q9H7X7 185 aa7.94□□□□□ -1.14
LINC00643-204ENST00000555934 SPTLC3Q9NUV7 552 aa7.94□□□□□ -1.14
LINC00643-204ENST00000555934 MYOTQ9UBF9 498 aa7.94□□□□□ -1.14
LINC00643-204ENST00000555934 NUDT5Q9UKK9 219 aa7.94□□□□□ -1.14
LINC00643-204ENST00000555934 SRPK3Q9UPE1 567 aa7.94□□□□□ -1.14
LINC00643-204ENST00000555934 TELO2Q9Y4R8 837 aa7.94□□□□□ -1.14
LINC00643-204ENST00000555934 PCDHB4Q9Y5E5 795 aa7.94□□□□□ -1.14
LINC00643-204ENST00000555934 SRGAP3O43295 1099 aa7.93□□□□□ -1.14
LINC00643-204ENST00000555934 PAX4O43316 350 aa7.93□□□□□ -1.14
LINC00643-204ENST00000555934 JUNBP17275 347 aaPredicted RBP7.93□□□□□ -1.14
LINC00643-204ENST00000555934 TAL1P17542 331 aaPredicted RBP7.93□□□□□ -1.14
LINC00643-204ENST00000555934 SLC6A11P48066 632 aa7.93□□□□□ -1.14
LINC00643-204ENST00000555934 ERVFRD-1P60508 538 aa7.93□□□□□ -1.14
LINC00643-204ENST00000555934 PRR5P85299 388 aa7.93□□□□□ -1.14
LINC00643-204ENST00000555934 TUSC3Q13454 348 aa7.93□□□□□ -1.14
LINC00643-204ENST00000555934 EMC4Q5J8M3 183 aa7.93□□□□□ -1.14
LINC00643-204ENST00000555934 KCTD1Q719H9 257 aa7.93□□□□□ -1.14
LINC00643-204ENST00000555934 PEX11GQ96HA9 241 aa7.93□□□□□ -1.14
LINC00643-204ENST00000555934 BOCQ9BWV1 1114 aa7.93□□□□□ -1.14
LINC00643-204ENST00000555934 SLC6A17Q9H1V8 727 aa7.93□□□□□ -1.14
LINC00643-204ENST00000555934 SMOC1Q9H4F8 434 aa7.93□□□□□ -1.14
LINC00643-204ENST00000555934 HOMER2Q9NSB8 354 aa7.93□□□□□ -1.14
LINC00643-204ENST00000555934 OXSMQ9NWU1 459 aa7.93□□□□□ -1.14
LINC00643-204ENST00000555934 MAFKO60675 156 aa7.92□□□□□ -1.14
LINC00643-204ENST00000555934 TADA3O75528 432 aa7.92□□□□□ -1.14
LINC00643-204ENST00000555934 ZBTB48P10074 688 aaPredicted RBP7.92□□□□□ -1.14
LINC00643-204ENST00000555934 BPIP17213 487 aa7.92□□□□□ -1.14
LINC00643-204ENST00000555934 SLC9A1P19634 815 aa7.92□□□□□ -1.14
LINC00643-204ENST00000555934 KPNA1P52294 538 aaPredicted RBP7.92□□□□□ -1.14
LINC00643-204ENST00000555934 RBM10P98175 930 aaKnown RBP7.92□□□□□ -1.14
LINC00643-204ENST00000555934 HHIPL2Q6UWX4 724 aa7.92□□□□□ -1.14
LINC00643-204ENST00000555934 ZSWIM9Q86XI8 627 aa7.92□□□□□ -1.14
LINC00643-204ENST00000555934 NOSTRINQ8IVI9 506 aa7.92□□□□□ -1.14
LINC00643-204ENST00000555934 ARRDC4Q8NCT1 418 aa7.92□□□□□ -1.14
LINC00643-204ENST00000555934 COG1Q8WTW3 980 aa7.92□□□□□ -1.14
LINC00643-204ENST00000555934 CLEC4DQ8WXI8 215 aa7.92□□□□□ -1.14
LINC00643-204ENST00000555934 RIC8BQ9NVN3 520 aa7.92□□□□□ -1.14
LINC00643-204ENST00000555934 DDX56Q9NY93 547 aaKnown RBP7.92□□□□□ -1.14
LINC00643-204ENST00000555934 ASH2LQ9UBL3 628 aa7.92□□□□□ -1.14
LINC00643-204ENST00000555934 ATP23Q9Y6H3 246 aa7.92□□□□□ -1.14
LINC00643-204ENST00000555934 OR14I1A6ND48 311 aa7.91□□□□□ -1.14
LINC00643-204ENST00000555934 H7C1D1 291 aa7.91□□□□□ -1.14
LINC00643-204ENST00000555934 RAB11FIP3O75154 756 aa7.91□□□□□ -1.14
LINC00643-204ENST00000555934 GLI1P08151 1106 aa7.91□□□□□ -1.14
LINC00643-204ENST00000555934 YBX3P16989 372 aaKnown RBP eCLIP7.91□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms