RNA–Protein interactions for RNA: ENST00000555543.1

VTI1B-205, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 2

Gene VTI1B, Length 718 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-205ENST00000555543 PPIGQ13427 754 aaKnown RBP eCLIP23.45■■□□□ 1.34
VTI1B-205ENST00000555543 MTMR1Q13613 665 aa23.45■■□□□ 1.34
VTI1B-205ENST00000555543 C8orf34Q49A92 452 aa23.45■■□□□ 1.34
VTI1B-205ENST00000555543 BUD13Q9BRD0 619 aaKnown RBP eCLIP23.45■■□□□ 1.345e-7■□□□□ 10.6
VTI1B-205ENST00000555543 KATNAL1Q9BW62 490 aa23.45■■□□□ 1.34
VTI1B-205ENST00000555543 JADE2Q9NQC1 790 aa23.45■■□□□ 1.34
VTI1B-205ENST00000555543 PKD2L1Q9P0L9 805 aa23.45■■□□□ 1.34
VTI1B-205ENST00000555543 VPS54Q9P1Q0 977 aa23.45■■□□□ 1.34
VTI1B-205ENST00000555543 HDAC6Q9UBN7 1215 aa23.45■■□□□ 1.34
VTI1B-205ENST00000555543 GTF2IRD1Q9UHL9 959 aa23.45■■□□□ 1.34
VTI1B-205ENST00000555543 TPCN1Q9ULQ1 816 aa23.45■■□□□ 1.34
VTI1B-205ENST00000555543 NOP56O00567 594 aaKnown RBP23.44■■□□□ 1.34
VTI1B-205ENST00000555543 ACRP10323 421 aa23.44■■□□□ 1.34
VTI1B-205ENST00000555543 AK2P54819 239 aa23.44■■□□□ 1.34
VTI1B-205ENST00000555543 SCRN1Q12765 414 aa23.44■■□□□ 1.34
VTI1B-205ENST00000555543 TRIM50Q86XT4 487 aa23.44■■□□□ 1.34
VTI1B-205ENST00000555543 CCDC12Q8WUD4 166 aaPredicted RBP23.44■■□□□ 1.34
VTI1B-205ENST00000555543 SCLYQ96I15 445 aa23.44■■□□□ 1.34
VTI1B-205ENST00000555543 CDHR1Q96JP9 859 aa23.44■■□□□ 1.34
VTI1B-205ENST00000555543 RNPC3Q96LT9 517 aaKnown RBP23.44■■□□□ 1.34
VTI1B-205ENST00000555543 MXRA8Q9BRK3 442 aa23.44■■□□□ 1.34
VTI1B-205ENST00000555543 C6orf50Q9HD87 102 aa23.44■■□□□ 1.34
VTI1B-205ENST00000555543 CPLX1O14810 134 aa23.43■■□□□ 1.34
VTI1B-205ENST00000555543 SSRP1Q08945 709 aaKnown RBP23.43■■□□□ 1.34
VTI1B-205ENST00000555543 HIC1Q14526 733 aa23.43■■□□□ 1.34
VTI1B-205ENST00000555543 PTGISQ16647 500 aa23.43■■□□□ 1.34
VTI1B-205ENST00000555543 TMEM240Q5SV17 173 aa23.43■■□□□ 1.34
VTI1B-205ENST00000555543 REXO1Q8N1G1 1221 aaKnown RBP23.43■■□□□ 1.34
VTI1B-205ENST00000555543 C7orf31Q8N865 590 aa23.43■■□□□ 1.34
VTI1B-205ENST00000555543 RASGRP4Q8TDF6 673 aa23.43■■□□□ 1.34
VTI1B-205ENST00000555543 VWCEQ96DN2 955 aa23.43■■□□□ 1.34
VTI1B-205ENST00000555543 DTNBO60941 627 aa23.42■■□□□ 1.34
VTI1B-205ENST00000555543 ARHGAP4P98171 946 aa23.42■■□□□ 1.34
VTI1B-205ENST00000555543 TRIM22Q8IYM9 498 aa23.42■■□□□ 1.34
VTI1B-205ENST00000555543 CCDC148Q8NFR7 591 aa23.42■■□□□ 1.34
VTI1B-205ENST00000555543 CRYGNQ8WXF5 182 aa23.42■■□□□ 1.34
VTI1B-205ENST00000555543 DHX38Q92620 1227 aaKnown RBP23.42■■□□□ 1.34
VTI1B-205ENST00000555543 AIFM3Q96NN9 605 aa23.42■■□□□ 1.34
VTI1B-205ENST00000555543 IL23AQ9NPF7 189 aa23.42■■□□□ 1.34
VTI1B-205ENST00000555543 KCNH7Q9NS40 1196 aa23.42■■□□□ 1.34
VTI1B-205ENST00000555543 NOD1Q9Y239 953 aa23.42■■□□□ 1.34
VTI1B-205ENST00000555543 TANC1Q9C0D5 1861 aa23.42■■□□□ 1.34
VTI1B-205ENST00000555543 H3BRB1 525 aa23.41■■□□□ 1.34
VTI1B-205ENST00000555543 PFKFB2O60825 505 aa23.41■■□□□ 1.34
VTI1B-205ENST00000555543 EIF5BO60841 1220 aaKnown RBP23.41■■□□□ 1.34
VTI1B-205ENST00000555543 ARP10275 920 aa23.41■■□□□ 1.34
VTI1B-205ENST00000555543 ZNF200P98182 395 aaPredicted RBP23.41■■□□□ 1.34
VTI1B-205ENST00000555543 CEP55Q53EZ4 464 aa23.41■■□□□ 1.34
VTI1B-205ENST00000555543 ZNF365Q70YC5 407 aa23.41■■□□□ 1.34
VTI1B-205ENST00000555543 GIMAP8Q8ND71 665 aaPredicted RBP23.41■■□□□ 1.34
VTI1B-205ENST00000555543 TUT1Q9H6E5 874 aaKnown RBP23.41■■□□□ 1.34
VTI1B-205ENST00000555543 DEXIO95424 95 aa23.4■■□□□ 1.34
VTI1B-205ENST00000555543 LARGE1O95461 756 aa23.4■■□□□ 1.34
VTI1B-205ENST00000555543 GNA11P29992 359 aa23.4■■□□□ 1.34
VTI1B-205ENST00000555543 UTP14CQ5TAP6 766 aaKnown RBP23.4■■□□□ 1.34
VTI1B-205ENST00000555543 SLKQ9H2G2 1235 aaPredicted RBP23.4■■□□□ 1.34
VTI1B-205ENST00000555543 SH3GLB2Q9NR46 395 aa23.4■■□□□ 1.34
VTI1B-205ENST00000555543 SCN5AQ14524 2016 aa23.4■■□□□ 1.34
VTI1B-205ENST00000555543 FAM86B1E9PN63 330 aa23.39■■□□□ 1.33
VTI1B-205ENST00000555543 MEIS1O00470 390 aa23.39■■□□□ 1.33
VTI1B-205ENST00000555543 PITPNM1O00562 1244 aa23.39■■□□□ 1.33
VTI1B-205ENST00000555543 MAFGO15525 162 aa23.39■■□□□ 1.33
VTI1B-205ENST00000555543 FAM86B2P0C5J1 330 aa23.39■■□□□ 1.33
VTI1B-205ENST00000555543 TCF7P36402 384 aaPredicted RBP23.39■■□□□ 1.33
VTI1B-205ENST00000555543 ITGB3BPQ13352 177 aaPredicted RBP23.39■■□□□ 1.33
VTI1B-205ENST00000555543 PSRC1Q6PGN9 363 aaPredicted RBP23.39■■□□□ 1.33
VTI1B-205ENST00000555543 CPLX2Q6PUV4 134 aaKnown RBP23.39■■□□□ 1.33
VTI1B-205ENST00000555543 Q7L0L9 218 aa23.39■■□□□ 1.33
VTI1B-205ENST00000555543 WNT8BQ93098 351 aa23.39■■□□□ 1.33
VTI1B-205ENST00000555543 IGLV3-22A0A075B6J6 115 aa23.38■■□□□ 1.33
VTI1B-205ENST00000555543 GSTTP1A0A1W2PQM5 241 aa23.38■■□□□ 1.33
VTI1B-205ENST00000555543 CYP3A4P08684 503 aa23.38■■□□□ 1.33
VTI1B-205ENST00000555543 SMIM10L2AP0DMW4 78 aa23.38■■□□□ 1.33
VTI1B-205ENST00000555543 SMIM10L2BP0DMW5 78 aa23.38■■□□□ 1.33
VTI1B-205ENST00000555543 HOXC8P31273 242 aa23.38■■□□□ 1.33
VTI1B-205ENST00000555543 ANKRD1Q15327 319 aa23.38■■□□□ 1.33
VTI1B-205ENST00000555543 RASIP1Q5U651 963 aa23.38■■□□□ 1.33
VTI1B-205ENST00000555543 GPR153Q6NV75 609 aa23.38■■□□□ 1.33
VTI1B-205ENST00000555543 AGO4Q9HCK5 861 aaKnown RBP23.38■■□□□ 1.33
VTI1B-205ENST00000555543 RBAK-RBAKDNI3L0D1 243 aa23.37■■□□□ 1.33
VTI1B-205ENST00000555543 CTDNEP1O95476 244 aa23.37■■□□□ 1.33
VTI1B-205ENST00000555543 ZNF76P36508 570 aa23.37■■□□□ 1.33
VTI1B-205ENST00000555543 NEK4P51957 841 aa23.37■■□□□ 1.33
VTI1B-205ENST00000555543 NLRP5P59047 1200 aa23.37■■□□□ 1.33
VTI1B-205ENST00000555543 BFSP2Q13515 415 aa23.37■■□□□ 1.33
VTI1B-205ENST00000555543 NPY5RQ15761 445 aa23.37■■□□□ 1.33
VTI1B-205ENST00000555543 ME3Q16798 604 aa23.37■■□□□ 1.33
VTI1B-205ENST00000555543 MCTP2Q6DN12 878 aa23.37■■□□□ 1.33
VTI1B-205ENST00000555543 FAM109BQ6ICB4 259 aaPredicted RBP23.37■■□□□ 1.33
VTI1B-205ENST00000555543 BICD2Q8TD16 824 aa23.37■■□□□ 1.33
VTI1B-205ENST00000555543 JPH1Q9HDC5 661 aaPredicted RBP23.37■■□□□ 1.33
VTI1B-205ENST00000555543 NFASCO94856 1347 aa23.36■■□□□ 1.33
VTI1B-205ENST00000555543 TRIP12Q14669 1992 aaPredicted RBP23.36■■□□□ 1.33
VTI1B-205ENST00000555543 IQCF3P0C7M6 154 aa23.36■■□□□ 1.33
VTI1B-205ENST00000555543 TRIM71Q2Q1W2 868 aaKnown RBP23.36■■□□□ 1.33
VTI1B-205ENST00000555543 NIPA1Q7RTP0 329 aa23.36■■□□□ 1.33
VTI1B-205ENST00000555543 DEFB128Q7Z7B8 93 aa23.36■■□□□ 1.33
VTI1B-205ENST00000555543 NECAB1Q8N987 351 aa23.36■■□□□ 1.33
VTI1B-205ENST00000555543 CAGE1Q8TC20 777 aa23.36■■□□□ 1.33
VTI1B-205ENST00000555543 SEPT1Q8WYJ6 367 aa23.36■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 62.6 ms