RNA–Protein interactions for RNA: ENST00000553686.5

ATXN3-223, Transcript of ataxin 3, human

TSL 1 (best)

Gene ATXN3, Length 869 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ATXN3-223	ENST00000553686	POLR2B	P30876	1174 aa	Known RBP	7.9	□□□□□ -1.14
ATXN3-223	ENST00000553686	FKBP1B	P68106	108 aa		7.9	□□□□□ -1.14
ATXN3-223	ENST00000553686	HDLBP	Q00341	1268 aa	Known RBP	7.9	□□□□□ -1.14
ATXN3-223	ENST00000553686	NLRC3	Q7RTR2	1065 aa		7.9	□□□□□ -1.14
ATXN3-223	ENST00000553686	NT5DC4	Q86YG4	428 aa		7.9	□□□□□ -1.14
ATXN3-223	ENST00000553686	TTC5	Q8N0Z6	440 aa		7.9	□□□□□ -1.14
ATXN3-223	ENST00000553686	SUPT20H	Q8NEM7	779 aa		7.9	□□□□□ -1.14
ATXN3-223	ENST00000553686	TMEM40	Q8WWA1	233 aa		7.9	□□□□□ -1.14
ATXN3-223	ENST00000553686	POLK	Q9UBT6	870 aa		7.9	□□□□□ -1.14
ATXN3-223	ENST00000553686	NRXN2	Q9P2S2	1712 aa		7.89	□□□□□ -1.15
ATXN3-223	ENST00000553686	PAPLN	O95428	1278 aa		7.89	□□□□□ -1.15
ATXN3-223	ENST00000553686	NME1	P15531	152 aa	Known RBP	7.89	□□□□□ -1.15
ATXN3-223	ENST00000553686	TM4SF4	P48230	202 aa		7.89	□□□□□ -1.15
ATXN3-223	ENST00000553686	TSPYL5	Q86VY4	417 aa	Predicted RBP	7.89	□□□□□ -1.15
ATXN3-223	ENST00000553686	EPB41L3	Q9Y2J2	1087 aa	Predicted RBP	7.89	□□□□□ -1.15
ATXN3-223	ENST00000553686	TRIM17	Q9Y577	477 aa		7.89	□□□□□ -1.15
ATXN3-223	ENST00000553686	TRIOBP	Q9H2D6	2365 aa		7.89	□□□□□ -1.15
ATXN3-223	ENST00000553686	FER1L6	Q2WGJ9	1857 aa		7.88	□□□□□ -1.15
ATXN3-223	ENST00000553686	RAD51AP2	Q09MP3	1159 aa		7.88	□□□□□ -1.15
ATXN3-223	ENST00000553686	SREBF2	Q12772	1141 aa		7.88	□□□□□ -1.15
ATXN3-223	ENST00000553686	PAK2	Q13177	524 aa		7.88	□□□□□ -1.15
ATXN3-223	ENST00000553686	GAB4	Q2WGN9	574 aa		7.88	□□□□□ -1.15
ATXN3-223	ENST00000553686	NBPF12	Q5TAG4	269 aa	Predicted RBP	7.88	□□□□□ -1.15
ATXN3-223	ENST00000553686	FBXW10	Q5XX13	1052 aa		7.88	□□□□□ -1.15
ATXN3-223	ENST00000553686	RASAL3	Q86YV0	1011 aa		7.88	□□□□□ -1.15
ATXN3-223	ENST00000553686	DPF2	Q92785	391 aa		7.88	□□□□□ -1.15
ATXN3-223	ENST00000553686	RPGR	Q92834	1020 aa	Known RBP	7.88	□□□□□ -1.15
ATXN3-223	ENST00000553686	FERD3L	Q96RJ6	166 aa		7.88	□□□□□ -1.15
ATXN3-223	ENST00000553686	CTNND2	Q9UQB3	1225 aa		7.88	□□□□□ -1.15
ATXN3-223	ENST00000553686	MYH14	Q7Z406	1995 aa	Known RBP	7.88	□□□□□ -1.15
ATXN3-223	ENST00000553686	DICER1	Q9UPY3	1922 aa	Known RBP	7.88	□□□□□ -1.15
ATXN3-223	ENST00000553686	ADAMTS7	Q9UKP4	1686 aa		7.87	□□□□□ -1.15
ATXN3-223	ENST00000553686		A0A1W2PPC1	479 aa		7.87	□□□□□ -1.15
ATXN3-223	ENST00000553686	MEIS3P2	A8K0S8	358 aa		7.87	□□□□□ -1.15
ATXN3-223	ENST00000553686	IMPDH2	P12268	514 aa		7.87	□□□□□ -1.15
ATXN3-223	ENST00000553686	CCNF	P41002	786 aa		7.87	□□□□□ -1.15
ATXN3-223	ENST00000553686	TNNT2	P45379	298 aa	Predicted RBP	7.87	□□□□□ -1.15
ATXN3-223	ENST00000553686	RNF4	P78317	190 aa		7.87	□□□□□ -1.15
ATXN3-223	ENST00000553686	CLEC16A	Q2KHT3	1053 aa		7.87	□□□□□ -1.15
ATXN3-223	ENST00000553686	OTOP1	Q7RTM1	612 aa		7.87	□□□□□ -1.15
ATXN3-223	ENST00000553686	DPF3	Q92784	378 aa		7.87	□□□□□ -1.15
ATXN3-223	ENST00000553686	ARMC5	Q96C12	935 aa		7.87	□□□□□ -1.15
ATXN3-223	ENST00000553686	RBM17	Q96I25	401 aa	Known RBP	7.87	□□□□□ -1.15
ATXN3-223	ENST00000553686	FMNL2	Q96PY5	1086 aa		7.87	□□□□□ -1.15
ATXN3-223	ENST00000553686	ALPK1	Q96QP1	1244 aa		7.87	□□□□□ -1.15
ATXN3-223	ENST00000553686	SLC9A7	Q96T83	725 aa		7.87	□□□□□ -1.15
ATXN3-223	ENST00000553686	ASCC2	Q9H1I8	757 aa	Predicted RBP	7.87	□□□□□ -1.15
ATXN3-223	ENST00000553686	SLAMF8	Q9P0V8	285 aa		7.87	□□□□□ -1.15
ATXN3-223	ENST00000553686	DUSP13	Q9UII6	198 aa		7.87	□□□□□ -1.15
ATXN3-223	ENST00000553686	NIP7	Q9Y221	180 aa	Known RBP eCLIP	7.87	□□□□□ -1.15
ATXN3-223	ENST00000553686	RGPD2	P0DJD1	1756 aa		7.87	□□□□□ -1.15
ATXN3-223	ENST00000553686	RNMT	O43148	476 aa	Known RBP	7.86	□□□□□ -1.15
ATXN3-223	ENST00000553686	CLEC3A	O75596	197 aa		7.86	□□□□□ -1.15
ATXN3-223	ENST00000553686	RAD17	O75943	681 aa		7.86	□□□□□ -1.15
ATXN3-223	ENST00000553686	TXK	P42681	527 aa		7.86	□□□□□ -1.15
ATXN3-223	ENST00000553686	AFM	P43652	599 aa		7.86	□□□□□ -1.15
ATXN3-223	ENST00000553686	SLC4A8	Q2Y0W8	1093 aa		7.86	□□□□□ -1.15
ATXN3-223	ENST00000553686	CRY2	Q49AN0	593 aa		7.86	□□□□□ -1.15
ATXN3-223	ENST00000553686	DLK2	Q6UY11	383 aa		7.86	□□□□□ -1.15
ATXN3-223	ENST00000553686	CRAMP1	Q96RY5	1269 aa		7.86	□□□□□ -1.15
ATXN3-223	ENST00000553686	TESK2	Q96S53	571 aa		7.86	□□□□□ -1.15
ATXN3-223	ENST00000553686	PPT2	Q9UMR5	302 aa		7.86	□□□□□ -1.15
ATXN3-223	ENST00000553686	PTPN22	Q9Y2R2	807 aa		7.86	□□□□□ -1.15
ATXN3-223	ENST00000553686	DLEC1	Q9Y238	1755 aa		7.86	□□□□□ -1.15
ATXN3-223	ENST00000553686	COL5A3	P25940	1745 aa	Predicted RBP	7.86	□□□□□ -1.15
ATXN3-223	ENST00000553686	SHISA3	A0PJX4	238 aa		7.85	□□□□□ -1.15
ATXN3-223	ENST00000553686	ADM5	C9JUS6	153 aa		7.85	□□□□□ -1.15
ATXN3-223	ENST00000553686	TNFRSF10C	O14798	259 aa		7.85	□□□□□ -1.15
ATXN3-223	ENST00000553686	A1BG	P04217	495 aa		7.85	□□□□□ -1.15
ATXN3-223	ENST00000553686	GDNF	P39905	211 aa		7.85	□□□□□ -1.15
ATXN3-223	ENST00000553686	INHBE	P58166	350 aa		7.85	□□□□□ -1.15
ATXN3-223	ENST00000553686	EGR3	Q06889	387 aa		7.85	□□□□□ -1.15
ATXN3-223	ENST00000553686	ARHGEF6	Q15052	776 aa		7.85	□□□□□ -1.15
ATXN3-223	ENST00000553686	NBPF9	Q3BBW0	867 aa		7.85	□□□□□ -1.15
ATXN3-223	ENST00000553686	TTC6	Q86TZ1	520 aa		7.85	□□□□□ -1.15
ATXN3-223	ENST00000553686	TMEM192	Q8IY95	271 aa		7.85	□□□□□ -1.15
ATXN3-223	ENST00000553686	CCDC120	Q96HB5	630 aa		7.85	□□□□□ -1.15
ATXN3-223	ENST00000553686	ERO1A	Q96HE7	468 aa		7.85	□□□□□ -1.15
ATXN3-223	ENST00000553686	NYX	Q9GZU5	481 aa		7.85	□□□□□ -1.15
ATXN3-223	ENST00000553686	ADAMTS10	Q9H324	1103 aa		7.85	□□□□□ -1.15
ATXN3-223	ENST00000553686	GINM1	Q9NU53	330 aa		7.85	□□□□□ -1.15
ATXN3-223	ENST00000553686	STXBP5L	Q9Y2K9	1186 aa		7.85	□□□□□ -1.15
ATXN3-223	ENST00000553686	NR2E3	Q9Y5X4	410 aa		7.85	□□□□□ -1.15
ATXN3-223	ENST00000553686	CCDC88A	Q3V6T2	1871 aa		7.85	□□□□□ -1.15
ATXN3-223	ENST00000553686	SLX4	Q8IY92	1834 aa		7.85	□□□□□ -1.15
ATXN3-223	ENST00000553686	KIF7	Q2M1P5	1343 aa		7.84	□□□□□ -1.15
ATXN3-223	ENST00000553686	DNAJC25-GNG10	A0A024R161	153 aa		7.84	□□□□□ -1.15
ATXN3-223	ENST00000553686	PRAMEF22	A3QJZ6	481 aa		7.84	□□□□□ -1.15
ATXN3-223	ENST00000553686	FAM86C2P	A6NEL3	165 aa		7.84	□□□□□ -1.15
ATXN3-223	ENST00000553686	TCERG1	O14776	1098 aa	Known RBP	7.84	□□□□□ -1.15
ATXN3-223	ENST00000553686	RPS12	P25398	132 aa	Known RBP	7.84	□□□□□ -1.15
ATXN3-223	ENST00000553686	KIAA2012	Q0VF49	1180 aa		7.84	□□□□□ -1.15
ATXN3-223	ENST00000553686	NMI	Q13287	307 aa	Predicted RBP	7.84	□□□□□ -1.15
ATXN3-223	ENST00000553686	TBC1D10B	Q4KMP7	808 aa	Predicted RBP	7.84	□□□□□ -1.15
ATXN3-223	ENST00000553686	RALGPS1	Q5JS13	557 aa		7.84	□□□□□ -1.15
ATXN3-223	ENST00000553686	SULT6B1	Q6IMI4	303 aa		7.84	□□□□□ -1.15
ATXN3-223	ENST00000553686	ENOX1	Q8TC92	643 aa	Known RBP	7.84	□□□□□ -1.15
ATXN3-223	ENST00000553686	FAM168A	Q92567	244 aa		7.84	□□□□□ -1.15
ATXN3-223	ENST00000553686	CDCA5	Q96FF9	252 aa		7.84	□□□□□ -1.15
ATXN3-223	ENST00000553686	ZNF496	Q96IT1	587 aa	Predicted RBP	7.84	□□□□□ -1.15

Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms