RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 COBLL1Q53SF7 1204 aa5.99□□□□□ -1.45
LIMA1-212ENST00000552491 GALNT17Q6IS24 598 aa5.99□□□□□ -1.45
LIMA1-212ENST00000552491 C8orf74Q6P047 294 aa5.99□□□□□ -1.45
LIMA1-212ENST00000552491 CNNM4Q6P4Q7 775 aa5.99□□□□□ -1.45
LIMA1-212ENST00000552491 USP17L2Q6R6M4 530 aa5.99□□□□□ -1.45
LIMA1-212ENST00000552491 DNAAF5Q86Y56 855 aa5.99□□□□□ -1.45
LIMA1-212ENST00000552491 CASKIN2Q8WXE0 1202 aa5.99□□□□□ -1.45
LIMA1-212ENST00000552491 GJA10Q969M2 543 aa5.99□□□□□ -1.45
LIMA1-212ENST00000552491 PACSIN1Q9BY11 444 aa5.99□□□□□ -1.45
LIMA1-212ENST00000552491 EPB41L5Q9HCM4 733 aa5.99□□□□□ -1.45
LIMA1-212ENST00000552491 MYH4Q9Y623 1939 aa5.99□□□□□ -1.45
LIMA1-212ENST00000552491 A6NNZ2 444 aa5.99□□□□□ -1.45
LIMA1-212ENST00000552491 OPA1O60313 960 aa5.99□□□□□ -1.45
LIMA1-212ENST00000552491 PALMO75781 387 aa5.99□□□□□ -1.45
LIMA1-212ENST00000552491 HEXIM1O94992 359 aaKnown RBP5.99□□□□□ -1.45
LIMA1-212ENST00000552491 TSPY3P0CV98 308 aa5.99□□□□□ -1.45
LIMA1-212ENST00000552491 TSPY8P0CW00 308 aa5.99□□□□□ -1.45
LIMA1-212ENST00000552491 RASA1P20936 1047 aa5.99□□□□□ -1.45
LIMA1-212ENST00000552491 KLRC1P26715 233 aa5.99□□□□□ -1.45
LIMA1-212ENST00000552491 GUCY2DQ02846 1103 aa5.99□□□□□ -1.45
LIMA1-212ENST00000552491 EHHADHQ08426 723 aa5.99□□□□□ -1.45
LIMA1-212ENST00000552491 PDE4CQ08493 712 aa5.99□□□□□ -1.45
LIMA1-212ENST00000552491 NONOQ15233 471 aaKnown RBP eCLIP5.99□□□□□ -1.45
LIMA1-212ENST00000552491 TUBB8Q3ZCM7 444 aa5.99□□□□□ -1.45
LIMA1-212ENST00000552491 CCDC181Q5TID7 509 aa5.99□□□□□ -1.45
LIMA1-212ENST00000552491 ALS2CLQ60I27 953 aa5.99□□□□□ -1.45
LIMA1-212ENST00000552491 MMS22LQ6ZRQ5 1243 aa5.99□□□□□ -1.45
LIMA1-212ENST00000552491 UNC13DQ70J99 1090 aa5.99□□□□□ -1.45
LIMA1-212ENST00000552491 NEK8Q86SG6 692 aa5.99□□□□□ -1.45
LIMA1-212ENST00000552491 SUGP1Q8IWZ8 645 aaKnown RBP5.99□□□□□ -1.45
LIMA1-212ENST00000552491 IFT81Q8WYA0 676 aa5.99□□□□□ -1.45
LIMA1-212ENST00000552491 MTMR9Q96QG7 549 aa5.99□□□□□ -1.45
LIMA1-212ENST00000552491 MKNK2Q9HBH9 465 aa5.99□□□□□ -1.45
LIMA1-212ENST00000552491 VAT1LQ9HCJ6 419 aa5.99□□□□□ -1.45
LIMA1-212ENST00000552491 SAP30BPQ9UHR5 308 aaKnown RBP5.99□□□□□ -1.45
LIMA1-212ENST00000552491 IRS2Q9Y4H2 1338 aa5.99□□□□□ -1.45
LIMA1-212ENST00000552491 RBAK-RBAKDNI3L0D1 243 aa5.98□□□□□ -1.45
LIMA1-212ENST00000552491 MYO1FO00160 1098 aa5.98□□□□□ -1.45
LIMA1-212ENST00000552491 ZEB2O60315 1214 aa5.98□□□□□ -1.45
LIMA1-212ENST00000552491 HSF2BPO75031 334 aa5.98□□□□□ -1.45
LIMA1-212ENST00000552491 TDP2O95551 362 aa5.98□□□□□ -1.45
LIMA1-212ENST00000552491 HNRNPH1P31943 449 aaKnown RBP5.98□□□□□ -1.45
LIMA1-212ENST00000552491 PAFAH1B1P43034 410 aa5.98□□□□□ -1.45
LIMA1-212ENST00000552491 FNTAP49354 379 aa5.98□□□□□ -1.45
LIMA1-212ENST00000552491 GNAQP50148 359 aa5.98□□□□□ -1.45
LIMA1-212ENST00000552491 SEC24CP53992 1094 aa5.98□□□□□ -1.45
LIMA1-212ENST00000552491 RPS8P62241 208 aaKnown RBP5.98□□□□□ -1.45
LIMA1-212ENST00000552491 SV2BQ7L1I2 683 aa5.98□□□□□ -1.45
LIMA1-212ENST00000552491 GUF1Q8N442 669 aaKnown RBP5.98□□□□□ -1.45
LIMA1-212ENST00000552491 PROCA1Q8NCQ7 364 aaPredicted RBP5.98□□□□□ -1.45
LIMA1-212ENST00000552491 TGFBRAP1Q8WUH2 860 aa5.98□□□□□ -1.45
LIMA1-212ENST00000552491 INPP4AQ96PE3 977 aaPredicted RBP5.98□□□□□ -1.45
LIMA1-212ENST00000552491 NOX5Q96PH1 765 aa5.98□□□□□ -1.45
LIMA1-212ENST00000552491 ALS2CR12Q96Q35 445 aa5.98□□□□□ -1.45
LIMA1-212ENST00000552491 PIGSQ96S52 555 aa5.98□□□□□ -1.45
LIMA1-212ENST00000552491 KRT12Q99456 494 aa5.98□□□□□ -1.45
LIMA1-212ENST00000552491 UBA5Q9GZZ9 404 aa5.98□□□□□ -1.45
LIMA1-212ENST00000552491 GOLPH3Q9H4A6 298 aa5.98□□□□□ -1.45
LIMA1-212ENST00000552491 SNED1Q8TER0 1413 aa5.98□□□□□ -1.45
LIMA1-212ENST00000552491 MAST2Q6P0Q8 1798 aa5.98□□□□□ -1.45
LIMA1-212ENST00000552491 A0A087X0T9 212 aa5.98□□□□□ -1.45
LIMA1-212ENST00000552491 SSU72P8A0A1W2PR75 194 aa5.98□□□□□ -1.45
LIMA1-212ENST00000552491 SHTN1A0MZ66 631 aa5.98□□□□□ -1.45
LIMA1-212ENST00000552491 NDUFAB1O14561 156 aa5.98□□□□□ -1.45
LIMA1-212ENST00000552491 RAD51CO43502 376 aa5.98□□□□□ -1.45
LIMA1-212ENST00000552491 FAM228BP0C875 321 aa5.98□□□□□ -1.45
LIMA1-212ENST00000552491 LSP1P33241 339 aa5.98□□□□□ -1.45
LIMA1-212ENST00000552491 NT5C2P49902 561 aa5.98□□□□□ -1.45
LIMA1-212ENST00000552491 NAP1L1P55209 391 aaKnown RBP5.98□□□□□ -1.45
LIMA1-212ENST00000552491 AMPD3Q01432 767 aa5.98□□□□□ -1.45
LIMA1-212ENST00000552491 ZCWPW2Q504Y3 356 aa5.98□□□□□ -1.45
LIMA1-212ENST00000552491 GLE1Q53GS7 698 aaKnown RBP5.98□□□□□ -1.45
LIMA1-212ENST00000552491 TDRD12Q587J7 1177 aaKnown RBP5.98□□□□□ -1.45
LIMA1-212ENST00000552491 TBC1D9BQ66K14 1250 aa5.98□□□□□ -1.45
LIMA1-212ENST00000552491 KRT25Q7Z3Z0 450 aa5.98□□□□□ -1.45
LIMA1-212ENST00000552491 MAPKAPK5Q8IW41 473 aa5.98□□□□□ -1.45
LIMA1-212ENST00000552491 TMC2Q8TDI7 906 aa5.98□□□□□ -1.45
LIMA1-212ENST00000552491 LARP4BQ92615 738 aaKnown RBP5.98□□□□□ -1.45
LIMA1-212ENST00000552491 DDX12PQ92771 950 aa5.98□□□□□ -1.45
LIMA1-212ENST00000552491 UIMC1Q96RL1 719 aa5.98□□□□□ -1.45
LIMA1-212ENST00000552491 ROBO1Q9Y6N7 1651 aa5.98□□□□□ -1.45
LIMA1-212ENST00000552491 ROBO3Q96MS0 1386 aa5.98□□□□□ -1.45
LIMA1-212ENST00000552491 CDK5RAP2Q96SN8 1893 aa5.97□□□□□ -1.45
LIMA1-212ENST00000552491 PVALEFA0A1B0GWK0 134 aa5.97□□□□□ -1.45
LIMA1-212ENST00000552491 GRID2IPA4D2P6 1211 aa5.97□□□□□ -1.45
LIMA1-212ENST00000552491 KCNQ2O43526 872 aa5.97□□□□□ -1.45
LIMA1-212ENST00000552491 ECHS1P30084 290 aa5.97□□□□□ -1.45
LIMA1-212ENST00000552491 INPP5BP32019 993 aa5.97□□□□□ -1.45
LIMA1-212ENST00000552491 POLR2FP61218 127 aaKnown RBP5.97□□□□□ -1.45
LIMA1-212ENST00000552491 ARID5AQ03989 594 aa5.97□□□□□ -1.45
LIMA1-212ENST00000552491 ENOX2Q16206 610 aaKnown RBP5.97□□□□□ -1.45
LIMA1-212ENST00000552491 PTPROQ16827 1216 aa5.97□□□□□ -1.45
LIMA1-212ENST00000552491 CFAP221Q4G0U5 840 aa5.97□□□□□ -1.45
LIMA1-212ENST00000552491 FAM83BQ5T0W9 1011 aa5.97□□□□□ -1.45
LIMA1-212ENST00000552491 CFAP58Q5T655 872 aa5.97□□□□□ -1.45
LIMA1-212ENST00000552491 NAA35Q5VZE5 725 aa5.97□□□□□ -1.45
LIMA1-212ENST00000552491 KDM7AQ6ZMT4 941 aa5.97□□□□□ -1.45
LIMA1-212ENST00000552491 CACNA2D4Q7Z3S7 1137 aa5.97□□□□□ -1.45
LIMA1-212ENST00000552491 CCDC84Q86UT8 332 aaPredicted RBP5.97□□□□□ -1.45
LIMA1-212ENST00000552491 DZIP1Q86YF9 867 aaKnown RBP5.97□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms